RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= 537021.9.peg.1142_1
(218 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 34.9 bits (80), Expect = 0.016
Identities = 46/250 (18%), Positives = 80/250 (32%), Gaps = 102/250 (40%)
Query: 11 STIQDKRWITGKDG------SVNNLARLMGQFLVMPISWSRMHL-----IEI-------- 51
S ++D + +G S++NL + + + ++ + HL +EI
Sbjct: 322 SILEDS--LENNEGVPSPMLSISNLTQ---EQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 52 ------PSSLVGVSSQVYRAKALVIGILGEELIRKTLVPLISGKEPQLDFSDPTEYIKAL 105
P SL G++ + +AKA G + R +P FS+ + L
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPS----GLDQSR---IP----------FSE-----RKL 414
Query: 106 INGITHYERF----SPFNSS--------------GWDVLGPWSSQAGKLAIAGKEAVWDE 147
++ RF SPF+S +V ++ A + I V+D
Sbjct: 415 K--FSN--RFLPVASPFHSHLLVPASDLINKDLVKNNV--SFN--AKDIQI----PVYD- 461
Query: 148 GTRKQRGKAQAQFGKELVN------TFVPFQNLWYARGAFN--HFVRNSIDDVLNPGGRA 199
T G + +P + W F H + PGG +
Sbjct: 462 -TFD--GSDLRVLSGSISERIVDCIIRLPVK--WETTTQFKATHIL------DFGPGGAS 510
Query: 200 RAEVYRQRQK 209
V R K
Sbjct: 511 GLGVLTHRNK 520
>1jsd_A Haemagglutinin (HA1 chain); viral protein; HET: NAG; 1.80A
{Influenza a virus} SCOP: b.19.1.2 PDB: 1jsh_A* 1jsi_A*
Length = 319
Score = 28.9 bits (65), Expect = 0.93
Identities = 7/32 (21%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 94 DFSDPTEYIKALINGITHYERFSPFNSSGWDV 125
+ + E +++L + + Y+R F + W+V
Sbjct: 94 NVENLEE-LRSLFSSASSYQRIQIFPDTIWNV 124
>2wr1_A Hemagglutinin; glycoprotein, lipoprotein, envelope protein, viral
protein; HET: SIA GAL NAG BMA MAN; 2.10A {Unidentified
influenza virus} PDB: 2wr0_A* 2wr2_A* 2wr3_A* 2wr4_A*
2wr5_A 2wrf_A* 2wr7_A* 2wrb_A* 2wrc_A 2wrd_A 2wre_A*
Length = 509
Score = 28.9 bits (65), Expect = 0.96
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 94 DFSDPTEYIKALINGITHYERFSPFNSSGW 123
F+D E +K LI +TH+E+ W
Sbjct: 109 SFNDYEE-LKHLITSVTHFEKVKILPRDQW 137
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.6 bits (63), Expect = 1.2
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 17/72 (23%)
Query: 92 QLDFSD--PTEYIK----ALINGITHYERFSPFNSSGWDVLGPWSSQA--------GKLA 137
QLDF + P + +K A + G+ ER +G+ +GPW S G+ +
Sbjct: 790 QLDFPELKPYKQVKQIAPAELEGLLDLERV--IVVTGFAEVGPWGSARTRWEMEAFGEFS 847
Query: 138 IAG-KEAVWDEG 148
+ G E W G
Sbjct: 848 LEGCVEMAWIMG 859
>3ku3_A Hemagglutinin HA1 chain; viral envelope protein, viral fusion
protein, envelope protein; HET: NAG; 1.60A {Influenza a
virus} PDB: 3ku6_A* 3ku5_A* 1jsm_A* 1jsn_A* 1jso_A*
Length = 327
Score = 27.8 bits (62), Expect = 2.1
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 94 DFSDPTEYIKALINGITHYERFSPFNSSGW 123
F+D E +K L++ + H+E+ W
Sbjct: 96 SFNDYEE-LKHLLSSVKHFEKVKILPKDRW 124
>2ibx_A Hemagglutinin, fragment; haemagglutinin, H5N1, viral protein; HET:
NAG; 2.80A {Influenza a virus} SCOP: b.19.1.2
Length = 340
Score = 26.6 bits (59), Expect = 4.6
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 94 DFSDPTEYIKALINGITHYERFSPFNSSGW 123
DF+D E +K L++ I H+E+ S W
Sbjct: 110 DFNDYEE-LKHLLSRINHFEKIQIIPKSSW 138
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Length = 1049
Score = 26.5 bits (57), Expect = 4.7
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 46 MHLIEIPSSLVGVSSQVYRAKALVIGILGEELIRKTLVPLISGKEPQLDFSDPTEYIKAL 105
M LI + +S +Y+ + G + + + L ++S P L ++ AL
Sbjct: 925 MKLISL-VYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSAL 983
Query: 106 INGITHYERF 115
F
Sbjct: 984 TKQYKDLVVF 993
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase,
structural genomics, PSI- nostoc, protein structure
initiative; 2.70A {Nostoc SP}
Length = 465
Score = 25.9 bits (56), Expect = 6.5
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 64 RAKALVIGILGE-ELIRKTLV--PLISGKEPQLDFSDPTEYIKALI 106
+ I+G E + L SG++ ++ +D E IK +
Sbjct: 419 KQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464
>1ra6_A P3D, genome polyprotein; nucleotidyltransferase, RNA-dependent,
polymerase, N-terminus; 2.00A {Human poliovirus 1
mahoney} SCOP: e.8.1.4 PDB: 1ra7_A* 2ily_A* 2ilz_A*
2im0_A* 2im1_A* 2im2_A* 2im3_A* 2ijf_A 1tql_A 1rdr_A
1raj_A 3ddk_A 3cdu_A 3cdw_A
Length = 461
Score = 26.1 bits (57), Expect = 7.4
Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 11/106 (10%)
Query: 66 KALVIGILGEELIRKTLVPLISGKEPQLDFSDPTEYIKALINGITHYERFSPFNSSGWDV 125
I + E + K V +G+ LD + ++ + G E S+G+
Sbjct: 63 VGNKITEVDEYM--KEAVDHYAGQLMSLDINTEQMXLEDAMYGTDGLEALDLSTSAGY-- 118
Query: 126 LGPWSSQAGKLAIAGKEAVWDEGTRKQRGKAQAQFGKELVNTFVPF 171
P+ + K K + ++ TR + + + V +
Sbjct: 119 --PYVAMGKK-----KRDILNKQTRDTKEMQKLLDTYGINLPLVTY 157
>2rft_A Influenza B hemagglutinin (HA); viral protein, receptor
specificity, envelope protein, fusion protein, membrane,
transmembrane, virion; HET: NAG SIA BGC GAL NDG; 2.80A
{Influenza b virus} PDB: 2rfu_A* 3bt6_A*
Length = 344
Score = 25.6 bits (56), Expect = 9.3
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 94 DFSDPTEYIKALINGITHYERFSPFNSSGW 123
D T+ + L N + YE +
Sbjct: 97 IMHDRTKI-RQLPNLLRGYENIRLSARNVT 125
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.318 0.135 0.408
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,950,220
Number of extensions: 88513
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 14
Length of query: 218
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 129
Effective length of database: 3,535,514
Effective search space: 456081306
Effective search space used: 456081306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.5 bits)