RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.1142_1
         (218 letters)



>d1jsda_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
           strains [TaxId: 11320]}
          Length = 317

 Score = 28.2 bits (63), Expect = 0.59
 Identities = 7/32 (21%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 94  DFSDPTEYIKALINGITHYERFSPFNSSGWDV 125
           +  +  E +++L +  + Y+R   F  + W+V
Sbjct: 94  NVENLEE-LRSLFSSASSYQRIQIFPDTIWNV 124


>d1jsma_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
           strains [TaxId: 11320]}
          Length = 321

 Score = 27.8 bits (62), Expect = 0.70
 Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 94  DFSDPTEYIKALINGITHYERFSPFNSSGW 123
           +F+D  E +K L++   H+E+      S W
Sbjct: 94  NFNDYEE-LKHLLSSTNHFEKIRIIPRSSW 122


>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
           {Domestic duck (Anas platyrhynchos), delta-crystallin
           [TaxId: 8839]}
          Length = 449

 Score = 26.8 bits (58), Expect = 1.6
 Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 14/51 (27%)

Query: 180 AFNHFVRNSIDDVLNP----------GGRARAEVYRQ----RQKYKKQRKR 216
           + +    + +  V N            G A++ V  Q    R+  KKQ+++
Sbjct: 399 SISPQFSSDVSQVFNFVNSVEQYTALAGTAKSSVTTQIEQLRELMKKQKEQ 449


>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl
           O-methyltransferase {Thermotoga maritima [TaxId: 2336]}
          Length = 213

 Score = 25.7 bits (55), Expect = 3.4
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 161 GKELVNTFVPFQNLWYARGAFNHFVRNSIDDVLNPGGRARAEVYR---QRQKYKKQRKRN 217
           G   V  F P+  ++   G     V  +    L  GGR    +     +RQ     +K++
Sbjct: 135 GYYGVPEFSPYDVIFVTVGV--DEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKD 192

Query: 218 G 218
            
Sbjct: 193 P 193


>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 459

 Score = 25.3 bits (54), Expect = 4.1
 Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 10/44 (22%)

Query: 180 AFNHFVRNSIDDVLNP----------GGRARAEVYRQRQKYKKQ 213
             +      +  V +           GG AR+ V  Q ++ +  
Sbjct: 410 TISPLFSGDVICVWDYRHSVEQYGALGGTARSSVDWQIRQVRAL 453


>d3buxb2 a.48.1.1 (B:48-177) N-terminal domain of cbl (N-cbl) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 130

 Score = 24.5 bits (53), Expect = 7.3
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 130 SSQAGKLAIAGKEAVWDEGTRKQR 153
           + Q   L   GKE +++E ++ +R
Sbjct: 79  TKQTISLFKEGKERMYEENSQPRR 102


>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
           {Escherichia coli [TaxId: 562]}
          Length = 455

 Score = 24.1 bits (51), Expect = 9.6
 Identities = 5/44 (11%), Positives = 15/44 (34%), Gaps = 10/44 (22%)

Query: 180 AFNHFVRNSIDDVLNP----------GGRARAEVYRQRQKYKKQ 213
            F+  +   +  +L+           GG +  +V +     + +
Sbjct: 410 KFSQVIDEDVYPILSLQSCLDKRAAKGGVSPQQVAQAIAFAQAR 453


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0602    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 838,733
Number of extensions: 37936
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 9
Length of query: 218
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,281,736
Effective search space: 174316096
Effective search space used: 174316096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)