RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= 537021.9.peg.1142_1 (218 letters) >d1jsda_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]} Length = 317 Score = 28.2 bits (63), Expect = 0.59 Identities = 7/32 (21%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Query: 94 DFSDPTEYIKALINGITHYERFSPFNSSGWDV 125 + + E +++L + + Y+R F + W+V Sbjct: 94 NVENLEE-LRSLFSSASSYQRIQIFPDTIWNV 124 >d1jsma_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]} Length = 321 Score = 27.8 bits (62), Expect = 0.70 Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Query: 94 DFSDPTEYIKALINGITHYERFSPFNSSGW 123 +F+D E +K L++ H+E+ S W Sbjct: 94 NFNDYEE-LKHLLSSTNHFEKIRIIPRSSW 122 >d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]} Length = 449 Score = 26.8 bits (58), Expect = 1.6 Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 14/51 (27%) Query: 180 AFNHFVRNSIDDVLNP----------GGRARAEVYRQ----RQKYKKQRKR 216 + + + + V N G A++ V Q R+ KKQ+++ Sbjct: 399 SISPQFSSDVSQVFNFVNSVEQYTALAGTAKSSVTTQIEQLRELMKKQKEQ 449 >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 213 Score = 25.7 bits (55), Expect = 3.4 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 5/61 (8%) Query: 161 GKELVNTFVPFQNLWYARGAFNHFVRNSIDDVLNPGGRARAEVYR---QRQKYKKQRKRN 217 G V F P+ ++ G V + L GGR + +RQ +K++ Sbjct: 135 GYYGVPEFSPYDVIFVTVGV--DEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKD 192 Query: 218 G 218 Sbjct: 193 P 193 >d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]} Length = 459 Score = 25.3 bits (54), Expect = 4.1 Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 10/44 (22%) Query: 180 AFNHFVRNSIDDVLNP----------GGRARAEVYRQRQKYKKQ 213 + + V + GG AR+ V Q ++ + Sbjct: 410 TISPLFSGDVICVWDYRHSVEQYGALGGTARSSVDWQIRQVRAL 453 >d3buxb2 a.48.1.1 (B:48-177) N-terminal domain of cbl (N-cbl) {Human (Homo sapiens) [TaxId: 9606]} Length = 130 Score = 24.5 bits (53), Expect = 7.3 Identities = 7/24 (29%), Positives = 14/24 (58%) Query: 130 SSQAGKLAIAGKEAVWDEGTRKQR 153 + Q L GKE +++E ++ +R Sbjct: 79 TKQTISLFKEGKERMYEENSQPRR 102 >d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} Length = 455 Score = 24.1 bits (51), Expect = 9.6 Identities = 5/44 (11%), Positives = 15/44 (34%), Gaps = 10/44 (22%) Query: 180 AFNHFVRNSIDDVLNP----------GGRARAEVYRQRQKYKKQ 213 F+ + + +L+ GG + +V + + + Sbjct: 410 KFSQVIDEDVYPILSLQSCLDKRAAKGGVSPQQVAQAIAFAQAR 453 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.318 0.135 0.408 Gapped Lambda K H 0.267 0.0602 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 838,733 Number of extensions: 37936 Number of successful extensions: 76 Number of sequences better than 10.0: 1 Number of HSP's gapped: 76 Number of HSP's successfully gapped: 9 Length of query: 218 Length of database: 2,407,596 Length adjustment: 82 Effective length of query: 136 Effective length of database: 1,281,736 Effective search space: 174316096 Effective search space used: 174316096 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (23.7 bits)