Query 537021.9.peg.116_1
Match_columns 39
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Mon May 23 19:25:55 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_116.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2nvp_A Hypothetical protein; 55.0 4.6 0.00014 21.3 1.0 24 16-39 21-44 (142)
2 >1z2z_A Probable tRNA pseudour 9.2 1.5E+02 0.0045 14.2 1.5 28 8-35 79-109 (120)
3 >2avu_E Flagellar transcriptio 7.8 1.2E+02 0.0035 14.7 0.4 14 20-33 16-29 (135)
4 >2b1h_P GP120, UG29 peptide of 7.1 87 0.0026 15.4 -0.5 22 10-33 2-23 (26)
5 >2eu9_A Dual specificity prote 6.9 1.6E+02 0.0048 14.1 0.8 18 12-29 14-31 (43)
6 >3gty_X Trigger factor, TF; ch 6.1 1.5E+02 0.0043 14.3 0.2 22 14-35 45-66 (108)
7 >1iuq_A Glycerol-3-phosphate a 5.8 2.2E+02 0.0065 13.5 0.9 20 14-33 25-50 (79)
8 >1j5s_A Uronate isomerase; TM0 4.6 1.7E+02 0.0051 14.0 -0.3 16 11-26 143-158 (183)
9 >1f58_P V3 loop, protein (exte 4.4 1.3E+02 0.0037 14.6 -1.1 18 9-26 1-18 (26)
10 >1t6a_A Rbstp2229 gene product 4.3 1.4E+02 0.0041 14.4 -0.9 15 12-26 60-78 (79)
No 1
>>2nvp_A Hypothetical protein; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Clostridium perfringens} (A:1-40,A:334-435)
Probab=55.03 E-value=4.6 Score=21.25 Aligned_cols=24 Identities=38% Similarity=0.741 Sum_probs=14.6
Q ss_pred HHCCHHHHHHHHHHHHHHHHEECC
Q ss_conf 203244532123321212101029
Q 537021.9.peg.1 16 GKLPRTMFYNSYRNCIINTINVFY 39 (39)
Q Consensus 16 gklprtmfynsyrnciintinvfy 39 (39)
||....-.-.-+-||.|||.|-+|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~NPYy 44 (142)
T 2nvp_A 21 GKIEDKKLQELFYNCFINTXNRFF 44 (142)
T ss_dssp HTCCCHHHHHHHHHHHHHHHSTTE
T ss_pred HHCCCHHHHHHHHHHCCCCHCCCC
T ss_conf 651798999999986752248752
No 2
>>1z2z_A Probable tRNA pseudouridine synthase D; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.60A {Methanosarcina mazei} (A:173-292)
Probab=9.22 E-value=1.5e+02 Score=14.20 Aligned_cols=28 Identities=29% Similarity=0.548 Sum_probs=20.5
Q ss_pred CCCHHHHHHHCCHH---HHHHHHHHHHHHHH
Q ss_conf 01377785203244---53212332121210
Q 537021.9.peg.1 8 AYNYKKRIGKLPRT---MFYNSYRNCIINTI 35 (39)
Q Consensus 8 aynykkrigklprt---mfynsyrnciinti 35 (39)
.-+|++-+..+|+. ||-++|..+|-|..
T Consensus 79 ~~~~~~Al~~iP~~lr~lyihAYQSylwN~~ 109 (120)
T 1z2z_A 79 PEDYSGSFRVLPQNLYRXFVHGYQSYIYNII 109 (120)
T ss_dssp TTCGGGGGTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 8257678772999999999988787665299
No 3
>>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} (E:58-192)
Probab=7.81 E-value=1.2e+02 Score=14.71 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 44532123321212
Q 537021.9.peg.1 20 RTMFYNSYRNCIIN 33 (39)
Q Consensus 20 rtmfynsyrnciin 33 (39)
-.||||.|+-.+-+
T Consensus 16 sSlF~niY~fl~~~ 29 (135)
T 2avu_E 16 ASMFCNAWQFLLKT 29 (135)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999855
No 4
>>2b1h_P GP120, UG29 peptide of exterior membrane glycoprotein GP120; FAB-peptide complex, HIV-1, V3 loop, immmune system; 2.00A {Homo sapiens} (P:)
Probab=7.10 E-value=87 Score=15.35 Aligned_cols=22 Identities=50% Similarity=0.674 Sum_probs=16.1
Q ss_pred CHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 377785203244532123321212
Q 537021.9.peg.1 10 NYKKRIGKLPRTMFYNSYRNCIIN 33 (39)
Q Consensus 10 nykkrigklprtmfynsyrnciin 33 (39)
|-||.|.--||..||.. |-||.
T Consensus 2 ntkksikirprqafyat--ngiig 23 (26)
T 2b1h_P 2 NTKKSIKIRPRQAFYAT--NGIIG 23 (26)
T ss_pred CCCCCEEECCHHHEECC--CCEEC
T ss_conf 85542586516740101--76103
No 5
>>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2exe_A (A:239-281)
Probab=6.86 E-value=1.6e+02 Score=14.07 Aligned_cols=18 Identities=22% Similarity=0.504 Sum_probs=13.9
Q ss_pred HHHHHHCCHHHHHHHHHH
Q ss_conf 778520324453212332
Q 537021.9.peg.1 12 KKRIGKLPRTMFYNSYRN 29 (39)
Q Consensus 12 kkrigklprtmfynsyrn 29 (39)
.+-+|++|..|+..+-+.
T Consensus 14 ErvlGpiP~~m~~~~~~~ 31 (43)
T 2eu9_A 14 EKILGPIPSHMIHRTRKQ 31 (43)
T ss_dssp HHHHCCCCHHHHHHCSCG
T ss_pred HHHCCCCCHHHHHHHHHC
T ss_conf 661478967887654411
No 6
>>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} PDB: 3gu0_A (X:1-108)
Probab=6.11 E-value=1.5e+02 Score=14.31 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=16.5
Q ss_pred HHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 8520324453212332121210
Q 537021.9.peg.1 14 RIGKLPRTMFYNSYRNCIINTI 35 (39)
Q Consensus 14 rigklprtmfynsyrnciinti 35 (39)
|-||.|+.|.-.-|..-|-..+
T Consensus 45 RkGKvP~~~i~k~~g~~i~~~~ 66 (108)
T 3gty_X 45 RKGRIPKNVLKMKLGEEFQEYT 66 (108)
T ss_dssp -CCCCCSHHHHTTSTTHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9997899999999879999999
No 7
>>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} (A:1-79)
Probab=5.78 E-value=2.2e+02 Score=13.48 Aligned_cols=20 Identities=45% Similarity=0.913 Sum_probs=14.8
Q ss_pred HHHHCCHH------HHHHHHHHHHHH
Q ss_conf 85203244------532123321212
Q 537021.9.peg.1 14 RIGKLPRT------MFYNSYRNCIIN 33 (39)
Q Consensus 14 rigklprt------mfynsyrnciin 33 (39)
..||||.. -+|..|||..+.
T Consensus 25 e~GklP~~va~gmeelY~NYknAV~~ 50 (79)
T 1iuq_A 25 EAGKLPPNVAAGXEELYQNYRNAVIE 50 (79)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 64778878999999999999999854
No 8
>>1j5s_A Uronate isomerase; TM0064, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.85A {Thermotoga maritima} (A:197-379)
Probab=4.57 E-value=1.7e+02 Score=13.99 Aligned_cols=16 Identities=6% Similarity=0.189 Sum_probs=12.1
Q ss_pred HHHHHHHCCHHHHHHH
Q ss_conf 7778520324453212
Q 537021.9.peg.1 11 YKKRIGKLPRTMFYNS 26 (39)
Q Consensus 11 ykkrigklprtmfyns 26 (39)
+..+.|+||+|.+|+-
T Consensus 143 lL~~~~~lPKtIly~L 158 (183)
T 1j5s_A 143 FLNEFDGKLKIVLYVL 158 (183)
T ss_dssp HHHHSTTTSCEEEEES
T ss_pred HHHHCCCCCCEEEEEC
T ss_conf 9985699889798979
No 9
>>1f58_P V3 loop, protein (exterior membrane glycoprotein(GP120)); immunoglobulin, FAB, HIV-1, viral protein/immune system complex; 2.00A {Mus musculus} PDB: 1ai1_P 1acy_P 2b1a_P (P:)
Probab=4.39 E-value=1.3e+02 Score=14.61 Aligned_cols=18 Identities=44% Similarity=0.717 Sum_probs=14.2
Q ss_pred CCHHHHHHHCCHHHHHHH
Q ss_conf 137778520324453212
Q 537021.9.peg.1 9 YNYKKRIGKLPRTMFYNS 26 (39)
Q Consensus 9 ynykkrigklprtmfyns 26 (39)
||-.|||.--|...||..
T Consensus 1 ynkrkrihigpgrafytt 18 (26)
T 1f58_P 1 YNKRKRIHIGPGRAFYTT 18 (26)
T ss_pred CCCCCEEEECCCCEEEEE
T ss_conf 985304777798116774
No 10
>>1t6a_A Rbstp2229 gene product; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: MSE; 2.05A {Geobacillus stearothermophilus} (A:48-126)
Probab=4.35 E-value=1.4e+02 Score=14.40 Aligned_cols=15 Identities=40% Similarity=0.485 Sum_probs=8.5
Q ss_pred HHHHHHC----CHHHHHHH
Q ss_conf 7785203----24453212
Q 537021.9.peg.1 12 KKRIGKL----PRTMFYNS 26 (39)
Q Consensus 12 kkrigkl----prtmfyns 26 (39)
||--|+| -|||+||+
T Consensus 60 K~l~geL~LFNGRtmyfn~ 78 (79)
T 1t6a_A 60 KTLGGELHLFSGRTXVFGS 78 (79)
T ss_dssp HHHCEEEECTTSCEEEEC-
T ss_pred HHHHCEEEEECCCEEEECC
T ss_conf 9741014775371787238
Done!