RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.116_1
         (39 letters)



>d2p41a1 c.66.1.25 (A:8-264) An RNA cap
          (nucleoside-2'-O-)-methyltransferase domain of RNA
          polymerase NS5 {Dengue virus 2 [TaxId: 11060]}
          Length = 257

 Score = 23.3 bits (50), Expect = 6.3
 Identities = 5/26 (19%), Positives = 11/26 (42%)

Query: 9  YNYKKRIGKLPRTMFYNSYRNCIINT 34
            +K R+  L ++ F    ++ I   
Sbjct: 4  EKWKSRLNALGKSEFQIYKKSGIQEV 29


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.143    0.438 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 148,661
Number of extensions: 3595
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 39
Length of database: 2,407,596
Length adjustment: 12
Effective length of query: 27
Effective length of database: 2,242,836
Effective search space: 60556572
Effective search space used: 60556572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.2 bits)