Query         537021.9.peg.128_1
Match_columns 42
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 39220
Date          Tue May 24 00:02:33 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_128.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 pfam12202 OSR1_C Oxidative-str  20.3      48  0.0012   16.8   1.1   11   17-27     20-30  (38)
  2 KOG4697 consensus               19.3      34 0.00088   17.5   0.2   18   15-39    111-128 (160)
  3 pfam05373 Pro_3_hydrox_C L-pro  16.8      95  0.0024   15.3   2.0   32    7-40     46-77  (101)
  4 COG3739 Uncharacterized integr  16.4      27 0.00068   18.0  -0.9   22   15-36    189-210 (263)
  5 pfam07069 PRRSV_2b Porcine rep  14.8      41   0.001   17.1  -0.3   20   19-41     34-53  (73)
  6 TIGR01524 ATPase-IIIB_Mg magne  14.0      87  0.0022   15.5   1.2   12   27-38    861-872 (892)
  7 COG5558 Transposase [DNA repli  11.4 1.7E+02  0.0043   14.0   2.0   31    8-38    163-200 (261)
  8 TIGR00935 2a45 arsenical pump   11.0 1.4E+02  0.0035   14.5   1.5   17   24-40     71-87  (507)
  9 pfam09451 ATG27 Autophagy-rela  10.9 1.2E+02  0.0029   14.9   1.0   10   28-37    198-207 (265)
 10 TIGR02311 HpaI 2,4-dihydroxyhe  10.3      48  0.0012   16.7  -1.1    5   30-34     34-38  (249)

No 1  
>pfam12202 OSR1_C Oxidative-stress-responsive kinase 1 C terminal. This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam00069. There is a single completely conserved residue F that may be functionally important. OSR1 is involved in the signalling cascade which activates Na/K/2Cl cotransporter during osmotic stress. This domain is the C terminal domain of OSR1 which recognizes a motif (Arg-Phe-Xaa-Val) on the OSR1-activating protein WNK1.
Probab=20.33  E-value=48  Score=16.76  Aligned_cols=11  Identities=36%  Similarity=0.634  Sum_probs=8.0

Q ss_pred             CCCEEEEEEHH
Q ss_conf             03237885013
Q 537021.9.peg.1   17 SFPIQFSFDCA   27 (42)
Q Consensus        17 sfpiqfsfdca   27 (42)
                      .-.|||+||-.
T Consensus        20 neaIqF~Fdl~   30 (38)
T pfam12202        20 NEAIEFEFDLG   30 (38)
T ss_pred             CCCEEEEEECC
T ss_conf             86379999747


No 2  
>KOG4697 consensus
Probab=19.28  E-value=34  Score=17.47  Aligned_cols=18  Identities=44%  Similarity=1.010  Sum_probs=10.9

Q ss_pred             HCCCCEEEEEEHHHHHHHHHHHHHH
Q ss_conf             0003237885013589999999998
Q 537021.9.peg.1   15 LRSFPIQFSFDCAGYFDWLLVILKR   39 (42)
Q Consensus        15 lrsfpiqfsfdcagyfdwllvilkr   39 (42)
                      -|+||-|||.       |+|-++..
T Consensus       111 nr~fPsqfsW-------w~LqVis~  128 (160)
T KOG4697         111 NRKFPSQFSW-------WFLQVISS  128 (160)
T ss_pred             CCCCCCHHHH-------HHHHHHHH
T ss_conf             3568750179-------99999988


No 3  
>pfam05373 Pro_3_hydrox_C L-proline 3-hydroxylase, C-terminal. Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases catalyse oxidative reactions in a range of metabolic processes. Proline 3-hydroxylase hydroxylates proline at position 3, the first of a 2-OG oxygenase catalysing oxidation of a free alpha-amino acid. The structure contains conserved motifs present in other 2-OG oxygenases including a jelly roll strand core and residues binding iron and 2-oxoglutarate, consistent with divergent evolution within the extended family. The structure differs significantly from many other 2-OG oxygenases in possessing a discrete C-terminal helical domain.
Probab=16.81  E-value=95  Score=15.30  Aligned_cols=32  Identities=31%  Similarity=0.718  Sum_probs=20.4

Q ss_pred             EEEEEHHHHCCCCEEEEEEHHHHHHHHHHHHHHH
Q ss_conf             3000001000032378850135899999999986
Q 537021.9.peg.1    7 KDVAFKTSLRSFPIQFSFDCAGYFDWLLVILKRL   40 (42)
Q Consensus         7 kdvafktslrsfpiqfsfdcagyfdwllvilkrl   40 (42)
                      +|+.|--|-  +-......|..-+|||.-|-||-
T Consensus        46 RDIvf~LsK--~Hf~~~v~~~~~ydWL~ei~kr~   77 (101)
T pfam05373        46 RDIVFILSK--LHFTYKVHCREMYDWLIEICKRR   77 (101)
T ss_pred             HHHHHHHHH--HHHHEECCHHHHHHHHHHHHHHC
T ss_conf             999999988--75210068799999999999872


No 4  
>COG3739 Uncharacterized integral membrane protein [Function unknown]
Probab=16.38  E-value=27  Score=18.03  Aligned_cols=22  Identities=41%  Similarity=0.791  Sum_probs=18.0

Q ss_pred             HCCCCEEEEEEHHHHHHHHHHH
Q ss_conf             0003237885013589999999
Q 537021.9.peg.1   15 LRSFPIQFSFDCAGYFDWLLVI   36 (42)
Q Consensus        15 lrsfpiqfsfdcagyfdwllvi   36 (42)
                      -|+.|+-|||-|-|.|-|+---
T Consensus       189 ~~kMPl~~sfvlIgfFIw~AEN  210 (263)
T COG3739         189 ARKMPLLFSFVLIGFFIWLAEN  210 (263)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHH
T ss_conf             2025568999999999999988


No 5  
>pfam07069 PRRSV_2b Porcine reproductive and respiratory syndrome virus 2b. This family consists of several Porcine reproductive and respiratory syndrome virus (PRRSV) ORF2b proteins. The function of this family is unknown however it is known that large amounts of 2b protein are present in the virion and it is thought that this protein may be an integral component of the virion.
Probab=14.80  E-value=41  Score=17.09  Aligned_cols=20  Identities=50%  Similarity=0.931  Sum_probs=14.8

Q ss_pred             CEEEEEEHHHHHHHHHHHHHHHC
Q ss_conf             23788501358999999999861
Q 537021.9.peg.1   19 PIQFSFDCAGYFDWLLVILKRLV   41 (42)
Q Consensus        19 piqfsfdcagyfdwllvilkrlv   41 (42)
                      .|-|.|.-||   ||+|.+-|+|
T Consensus        34 ail~gftiag---wl~vf~ir~v   53 (73)
T pfam07069        34 AILFGFTIAG---WLVVFCIKLV   53 (73)
T ss_pred             HHHHHHHHHH---HHHHHHHHHH
T ss_conf             9999668999---9999999999


No 6  
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase; InterPro: IPR006415   This group describes the magnesium translocating P-type ATPase found in a limited number of bacterial species and best described in Salmonella typhimurium, which contains two isoforms . These transporters are active in low external Mg2+ concentrations and pump the ion into the cytoplasm. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis .; GO: 0015444 magnesium-importing ATPase activity, 0015693 magnesium ion transport, 0016021 integral to membrane.
Probab=13.97  E-value=87  Score=15.47  Aligned_cols=12  Identities=50%  Similarity=1.129  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             358999999999
Q 537021.9.peg.1   27 AGYFDWLLVILK   38 (42)
Q Consensus        27 agyfdwllvilk   38 (42)
                      ..||-||..||-
T Consensus       861 lSYFPWLiaiLv  872 (892)
T TIGR01524       861 LSYFPWLIAILV  872 (892)
T ss_pred             CCHHHHHHHHHH
T ss_conf             750079999999


No 7  
>COG5558 Transposase [DNA replication, recombination, and repair]
Probab=11.37  E-value=1.7e+02  Score=14.04  Aligned_cols=31  Identities=32%  Similarity=0.489  Sum_probs=22.6

Q ss_pred             EEEEHHHHCCCCEEEEEE-------HHHHHHHHHHHHH
Q ss_conf             000001000032378850-------1358999999999
Q 537021.9.peg.1    8 DVAFKTSLRSFPIQFSFD-------CAGYFDWLLVILK   38 (42)
Q Consensus         8 dvafktslrsfpiqfsfd-------cagyfdwllvilk   38 (42)
                      |--+++.||-||-.-+.-       ..|-|||+-+|+.
T Consensus       163 dKYY~sTL~~F~~~~~~~v~~~~~~~r~G~~W~~~I~R  200 (261)
T COG5558         163 DKYYSSTLRLFDAETAVYVIPKRNLARIGFDWLRVIER  200 (261)
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             56676577527864069964765344402569999999


No 8  
>TIGR00935 2a45 arsenical pump membrane protein; InterPro: IPR000802   Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria . The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane . The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase.   The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane.
Probab=10.97  E-value=1.4e+02  Score=14.46  Aligned_cols=17  Identities=41%  Similarity=0.923  Sum_probs=0.0

Q ss_pred             EEHHHHHHHHHHHHHHH
Q ss_conf             50135899999999986
Q 537021.9.peg.1   24 FDCAGYFDWLLVILKRL   40 (42)
Q Consensus        24 fdcagyfdwllvilkrl   40 (42)
                      +|-.|+|||.-+-.-|+
T Consensus        71 LdE~GfFew~A~~~~r~   87 (507)
T TIGR00935        71 LDETGFFEWAAVHVYRL   87 (507)
T ss_pred             HHHCCHHHHHHHHHHHH
T ss_conf             71034678999999984


No 9  
>pfam09451 ATG27 Autophagy-related protein 27.
Probab=10.93  E-value=1.2e+02  Score=14.86  Aligned_cols=10  Identities=50%  Similarity=1.474  Sum_probs=0.0

Q ss_pred             HHHHHHHHHH
Q ss_conf             5899999999
Q 537021.9.peg.1   28 GYFDWLLVIL   37 (42)
Q Consensus        28 gyfdwllvil   37 (42)
                      |+|-|+.+|+
T Consensus       198 G~FTWlfi~~  207 (265)
T pfam09451       198 GWFTWLFIYL  207 (265)
T ss_pred             CHHHHHHHHH
T ss_conf             5035687999


No 10 
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; InterPro: IPR012689    This entry represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway.; GO: 0018802 24-dihydroxyhept-2-ene-17-dioate aldolase activity, 0010124 phenylacetate catabolic process.
Probab=10.32  E-value=48  Score=16.74  Aligned_cols=5  Identities=100%  Similarity=2.255  Sum_probs=0.0

Q ss_pred             HHHHH
Q ss_conf             99999
Q 537021.9.peg.1   30 FDWLL   34 (42)
Q Consensus        30 fdwll   34 (42)
                      |||||
T Consensus        34 fDWLL   38 (249)
T TIGR02311        34 FDWLL   38 (249)
T ss_pred             CCEEE
T ss_conf             63110


Done!