Query         537021.9.peg.15_1
Match_columns 47
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Sun May 22 07:21:45 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_15.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1v54_A Cytochrome C oxidase p  12.6 1.1E+02  0.0032   13.4   2.0   15   20-34    209-223 (242)
  2 >3e4b_A ALGK; tetratricopeptid  12.5 1.1E+02  0.0031   13.5   1.6   16   23-38     38-53  (72)
  3 >1bnx_A Protein (BAND 3); huma  11.8      89  0.0026   13.9   1.0   14    4-18      7-20  (33)
  4 >2jes_A Portal protein; DNA tr   9.7 1.4E+02  0.0041   12.9   2.2   14   10-23    150-163 (167)
  5 >1xme_A Cytochrome C oxidase p   9.1 1.5E+02  0.0044   12.7   2.1   15   20-34    114-128 (220)
  6 >1fft_A Ubiquinol oxidase; ele   8.7 1.5E+02  0.0045   12.7   2.0   15   20-34     48-62  (152)
  7 >2pyx_A Tryptophan halogenase;   6.5   2E+02  0.0059   12.1   1.8   37    3-39     16-61  (93)
  8 >3eh2_A Protein transport prot   6.1      99  0.0029   13.6  -0.7   11   10-20    106-116 (143)
  9 >2es9_A Putative cytoplasmic p   5.9 1.5E+02  0.0046   12.7   0.2   13   14-26     94-106 (115)
 10 >1nkz_B Light-harvesting prote   5.9 2.2E+02  0.0064   11.9   2.6   16   17-32     13-28  (41)

No 1  
>>1v54_A Cytochrome C oxidase polypeptide I; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} (A:90-331)
Probab=12.62  E-value=1.1e+02  Score=13.41  Aligned_cols=15  Identities=40%  Similarity=0.649  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             887789999999999
Q 537021.9.peg.1   20 RESTRAFFSLATLLY   34 (47)
Q Consensus        20 restraffslatlly   34 (47)
                      .-.||++|+.||.+-
T Consensus       209 dvdtrayFt~aTmiI  223 (242)
T 1v54_A          209 DVDTRAYFTSATMII  223 (242)
T ss_dssp             CHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHH
T ss_conf             788999999999999


No 2  
>>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynthesis, protein binding; 2.50A {Pseudomonas fluorescens} (A:211-282)
Probab=12.46  E-value=1.1e+02  Score=13.49  Aligned_cols=16  Identities=44%  Similarity=0.673  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHC
Q ss_conf             7899999999999824
Q 537021.9.peg.1   23 TRAFFSLATLLYLFSS   38 (47)
Q Consensus        23 traffslatllylfss   38 (47)
                      .-++.|||.|||-|..
T Consensus        38 pasWvsLA~LlYDfP~   53 (72)
T 3e4b_A           38 PASWVSLAQLLYDFPE   53 (72)
T ss_dssp             THHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHHHHHCCC
T ss_conf             7999999888875674


No 3  
>>1bnx_A Protein (BAND 3); human erythrocyte anion transporter, transmembrane, synthetic peptide,; NMR {Synthetic} (A:)
Probab=11.79  E-value=89  Score=13.87  Aligned_cols=14  Identities=50%  Similarity=0.985  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             578999999999999
Q 537021.9.peg.1    4 DGIHDFLIFLYFAKY   18 (47)
Q Consensus         4 dgihdfliflyfaky   18 (47)
                      ..+.| .||+|||--
T Consensus         7 SD~~D-~iFiYfA~l   20 (33)
T 1bnx_A            7 SDITD-VIFIYFAAL   20 (33)
T ss_dssp             HHHHH-HHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHH
T ss_conf             88889-999999985


No 4  
>>2jes_A Portal protein; DNA translocation, molecular motor, viral portal protein, viral protein; 3.4A {Bacteriophage SPP1} (A:141-255,A:353-404)
Probab=9.68  E-value=1.4e+02  Score=12.87  Aligned_cols=14  Identities=50%  Similarity=1.065  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999998877
Q 537021.9.peg.1   10 LIFLYFAKYLREST   23 (47)
Q Consensus        10 liflyfakylrest   23 (47)
                      |.|.+||.|||...
T Consensus       150 ~~~~~~~~~~~~~~  163 (167)
T 2jes_A          150 LFFWFFAEYLRNTG  163 (167)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCC
T ss_conf             99999999998506


No 5  
>>1xme_A Cytochrome C oxidase polypeptide I; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} (A:184-342,A:508-568)
Probab=9.06  E-value=1.5e+02  Score=12.74  Aligned_cols=15  Identities=20%  Similarity=0.231  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             887789999999999
Q 537021.9.peg.1   20 RESTRAFFSLATLLY   34 (47)
Q Consensus        20 restraffslatlly   34 (47)
                      ...+|+|||.+|.+-
T Consensus       114 ~~~trafFs~aTmlI  128 (220)
T 1xme_A          114 DPTWKMIHSVLTLFV  128 (220)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
T ss_conf             889999999999999


No 6  
>>1fft_A Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} (A:294-445)
Probab=8.73  E-value=1.5e+02  Score=12.66  Aligned_cols=15  Identities=27%  Similarity=0.618  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             887789999999999
Q 537021.9.peg.1   20 RESTRAFFSLATLLY   34 (47)
Q Consensus        20 restraffslatlly   34 (47)
                      ...+|++|+.+|.+-
T Consensus        48 ~~~~~~~F~~aTm~I   62 (152)
T 1fft_A           48 GANVNAFFGITTMII   62 (152)
T ss_dssp             CHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHH
T ss_conf             817999999999999


No 7  
>>2pyx_A Tryptophan halogenase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina ncimb 400} (A:386-478)
Probab=6.49  E-value=2e+02  Score=12.09  Aligned_cols=37  Identities=30%  Similarity=0.415  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHH------HHHHHHHHH---HHHHHHHHHHHHCC
Q ss_conf             35789999999999------999887789---99999999998246
Q 537021.9.peg.1    3 LDGIHDFLIFLYFA------KYLRESTRA---FFSLATLLYLFSSN   39 (47)
Q Consensus         3 ldgihdfliflyfa------kylrestra---ffslatllylfssn   39 (47)
                      .|+|-||++.-|.+      .|-|...+.   -=||+..+-+|.+.
T Consensus        16 ~e~irDFi~lHY~ls~R~Dt~fWrd~~~~~~ipd~L~~kl~~w~~~   61 (93)
T 2pyx_A           16 WQQIIDFLKLHYVISQRQEDRYWRDHRESNSIPDSLQAXLELWRYQ   61 (93)
T ss_dssp             HHHHHHHHHHHHHTCCCCSSHHHHHTTSGGGSCHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf             9999999999996688888789999875689997999999998504


No 8  
>>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} (A:511-620,A:734-766)
Probab=6.05  E-value=99  Score=13.63  Aligned_cols=11  Identities=36%  Similarity=0.944  Sum_probs=4.1

Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999998
Q 537021.9.peg.1   10 LIFLYFAKYLR   20 (47)
Q Consensus        10 liflyfakylr   20 (47)
                      +.++||+++|-
T Consensus       106 ~~~iY~~~~~~  116 (143)
T 3eh2_A          106 NVFFYFKHFLV  116 (143)
T ss_dssp             HHHHSHHTTCT
T ss_pred             HCEECHHHHCC
T ss_conf             10222998470


No 9  
>>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Salmonella typhimurium LT2} (A:)
Probab=5.95  E-value=1.5e+02  Score=12.65  Aligned_cols=13  Identities=31%  Similarity=0.833  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999998877899
Q 537021.9.peg.1   14 YFAKYLRESTRAF   26 (47)
Q Consensus        14 yfakylrestraf   26 (47)
                      ||..|.||.-||.
T Consensus        94 yFstYm~eeLkaL  106 (115)
T 2es9_A           94 YFSTYXQEQLKEL  106 (115)
T ss_dssp             GSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999999


No 10 
>>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopin glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} (B:)
Probab=5.89  E-value=2.2e+02  Score=11.91  Aligned_cols=16  Identities=44%  Similarity=0.773  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9998877899999999
Q 537021.9.peg.1   17 KYLRESTRAFFSLATL   32 (47)
Q Consensus        17 kylrestraffslatl   32 (47)
                      ||+-..||.|...|-+
T Consensus        13 ~~vidGtRvF~~iA~~   28 (41)
T 1nkz_B           13 KYVIDGTRVFLGLALV   28 (41)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHH
T ss_conf             8740633789999999


Done!