Query 537021.9.peg.15_1 Match_columns 47 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Sun May 22 07:21:45 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_15.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1v54_A Cytochrome C oxidase p 12.6 1.1E+02 0.0032 13.4 2.0 15 20-34 209-223 (242) 2 >3e4b_A ALGK; tetratricopeptid 12.5 1.1E+02 0.0031 13.5 1.6 16 23-38 38-53 (72) 3 >1bnx_A Protein (BAND 3); huma 11.8 89 0.0026 13.9 1.0 14 4-18 7-20 (33) 4 >2jes_A Portal protein; DNA tr 9.7 1.4E+02 0.0041 12.9 2.2 14 10-23 150-163 (167) 5 >1xme_A Cytochrome C oxidase p 9.1 1.5E+02 0.0044 12.7 2.1 15 20-34 114-128 (220) 6 >1fft_A Ubiquinol oxidase; ele 8.7 1.5E+02 0.0045 12.7 2.0 15 20-34 48-62 (152) 7 >2pyx_A Tryptophan halogenase; 6.5 2E+02 0.0059 12.1 1.8 37 3-39 16-61 (93) 8 >3eh2_A Protein transport prot 6.1 99 0.0029 13.6 -0.7 11 10-20 106-116 (143) 9 >2es9_A Putative cytoplasmic p 5.9 1.5E+02 0.0046 12.7 0.2 13 14-26 94-106 (115) 10 >1nkz_B Light-harvesting prote 5.9 2.2E+02 0.0064 11.9 2.6 16 17-32 13-28 (41) No 1 >>1v54_A Cytochrome C oxidase polypeptide I; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} (A:90-331) Probab=12.62 E-value=1.1e+02 Score=13.41 Aligned_cols=15 Identities=40% Similarity=0.649 Sum_probs=10.8 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 887789999999999 Q 537021.9.peg.1 20 RESTRAFFSLATLLY 34 (47) Q Consensus 20 restraffslatlly 34 (47) .-.||++|+.||.+- T Consensus 209 dvdtrayFt~aTmiI 223 (242) T 1v54_A 209 DVDTRAYFTSATMII 223 (242) T ss_dssp CHHHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHHH T ss_conf 788999999999999 No 2 >>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynthesis, protein binding; 2.50A {Pseudomonas fluorescens} (A:211-282) Probab=12.46 E-value=1.1e+02 Score=13.49 Aligned_cols=16 Identities=44% Similarity=0.673 Sum_probs=12.7 Q ss_pred HHHHHHHHHHHHHHHC Q ss_conf 7899999999999824 Q 537021.9.peg.1 23 TRAFFSLATLLYLFSS 38 (47) Q Consensus 23 traffslatllylfss 38 (47) .-++.|||.|||-|.. T Consensus 38 pasWvsLA~LlYDfP~ 53 (72) T 3e4b_A 38 PASWVSLAQLLYDFPE 53 (72) T ss_dssp THHHHHHHHHHHHSGG T ss_pred HHHHHHHHHHHHHCCC T ss_conf 7999999888875674 No 3 >>1bnx_A Protein (BAND 3); human erythrocyte anion transporter, transmembrane, synthetic peptide,; NMR {Synthetic} (A:) Probab=11.79 E-value=89 Score=13.87 Aligned_cols=14 Identities=50% Similarity=0.985 Sum_probs=8.9 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 578999999999999 Q 537021.9.peg.1 4 DGIHDFLIFLYFAKY 18 (47) Q Consensus 4 dgihdfliflyfaky 18 (47) ..+.| .||+|||-- T Consensus 7 SD~~D-~iFiYfA~l 20 (33) T 1bnx_A 7 SDITD-VIFIYFAAL 20 (33) T ss_dssp HHHHH-HHHHHHHHH T ss_pred HHHHH-HHHHHHHHH T ss_conf 88889-999999985 No 4 >>2jes_A Portal protein; DNA translocation, molecular motor, viral portal protein, viral protein; 3.4A {Bacteriophage SPP1} (A:141-255,A:353-404) Probab=9.68 E-value=1.4e+02 Score=12.87 Aligned_cols=14 Identities=50% Similarity=1.065 Sum_probs=9.3 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999998877 Q 537021.9.peg.1 10 LIFLYFAKYLREST 23 (47) Q Consensus 10 liflyfakylrest 23 (47) |.|.+||.|||... T Consensus 150 ~~~~~~~~~~~~~~ 163 (167) T 2jes_A 150 LFFWFFAEYLRNTG 163 (167) T ss_dssp HHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHCC T ss_conf 99999999998506 No 5 >>1xme_A Cytochrome C oxidase polypeptide I; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} (A:184-342,A:508-568) Probab=9.06 E-value=1.5e+02 Score=12.74 Aligned_cols=15 Identities=20% Similarity=0.231 Sum_probs=10.8 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 887789999999999 Q 537021.9.peg.1 20 RESTRAFFSLATLLY 34 (47) Q Consensus 20 restraffslatlly 34 (47) ...+|+|||.+|.+- T Consensus 114 ~~~trafFs~aTmlI 128 (220) T 1xme_A 114 DPTWKMIHSVLTLFV 128 (220) T ss_dssp CHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHH T ss_conf 889999999999999 No 6 >>1fft_A Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} (A:294-445) Probab=8.73 E-value=1.5e+02 Score=12.66 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=11.1 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 887789999999999 Q 537021.9.peg.1 20 RESTRAFFSLATLLY 34 (47) Q Consensus 20 restraffslatlly 34 (47) ...+|++|+.+|.+- T Consensus 48 ~~~~~~~F~~aTm~I 62 (152) T 1fft_A 48 GANVNAFFGITTMII 62 (152) T ss_dssp CHHHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHHH T ss_conf 817999999999999 No 7 >>2pyx_A Tryptophan halogenase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina ncimb 400} (A:386-478) Probab=6.49 E-value=2e+02 Score=12.09 Aligned_cols=37 Identities=30% Similarity=0.415 Sum_probs=25.9 Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHH---HHHHHHHHHHHHCC Q ss_conf 35789999999999------999887789---99999999998246 Q 537021.9.peg.1 3 LDGIHDFLIFLYFA------KYLRESTRA---FFSLATLLYLFSSN 39 (47) Q Consensus 3 ldgihdfliflyfa------kylrestra---ffslatllylfssn 39 (47) .|+|-||++.-|.+ .|-|...+. -=||+..+-+|.+. T Consensus 16 ~e~irDFi~lHY~ls~R~Dt~fWrd~~~~~~ipd~L~~kl~~w~~~ 61 (93) T 2pyx_A 16 WQQIIDFLKLHYVISQRQEDRYWRDHRESNSIPDSLQAXLELWRYQ 61 (93) T ss_dssp HHHHHHHHHHHHHTCCCCSSHHHHHTTSGGGSCHHHHHHHHHHTTS T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCC T ss_conf 9999999999996688888789999875689997999999998504 No 8 >>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} (A:511-620,A:734-766) Probab=6.05 E-value=99 Score=13.63 Aligned_cols=11 Identities=36% Similarity=0.944 Sum_probs=4.1 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999998 Q 537021.9.peg.1 10 LIFLYFAKYLR 20 (47) Q Consensus 10 liflyfakylr 20 (47) +.++||+++|- T Consensus 106 ~~~iY~~~~~~ 116 (143) T 3eh2_A 106 NVFFYFKHFLV 116 (143) T ss_dssp HHHHSHHTTCT T ss_pred HCEECHHHHCC T ss_conf 10222998470 No 9 >>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Salmonella typhimurium LT2} (A:) Probab=5.95 E-value=1.5e+02 Score=12.65 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999998877899 Q 537021.9.peg.1 14 YFAKYLRESTRAF 26 (47) Q Consensus 14 yfakylrestraf 26 (47) ||..|.||.-||. T Consensus 94 yFstYm~eeLkaL 106 (115) T 2es9_A 94 YFSTYXQEQLKEL 106 (115) T ss_dssp GSCHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999999 No 10 >>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopin glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} (B:) Probab=5.89 E-value=2.2e+02 Score=11.91 Aligned_cols=16 Identities=44% Similarity=0.773 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9998877899999999 Q 537021.9.peg.1 17 KYLRESTRAFFSLATL 32 (47) Q Consensus 17 kylrestraffslatl 32 (47) ||+-..||.|...|-+ T Consensus 13 ~~vidGtRvF~~iA~~ 28 (41) T 1nkz_B 13 KYVIDGTRVFLGLALV 28 (41) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHCCHHHHHHHHHH T ss_conf 8740633789999999 Done!