Query 537021.9.peg.15_1 Match_columns 47 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Sun May 22 15:06:46 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_15.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1bnx_A Protein (BAND 3); human 19.9 48 0.002 14.5 2.2 14 4-18 8-21 (34) 2 2jkg_A Profilin; proline-rich 7.4 1.1E+02 0.0047 12.6 0.9 14 11-24 158-171 (179) 3 3bz1_L Photosystem II reaction 5.8 1.5E+02 0.0064 11.9 1.0 11 31-41 26-36 (37) 4 1nkz_B Light-harvesting protei 5.1 1.7E+02 0.0072 11.6 2.6 18 15-32 11-28 (41) 5 2es9_A Putative cytoplasmic pr 4.7 1.5E+02 0.0061 12.0 0.2 13 14-26 94-106 (115) 6 2f3y_B Voltage-dependent L-typ 4.0 2.1E+02 0.0088 11.2 1.6 14 7-20 4-17 (26) 7 2o1k_A NS28, non-structural gl 3.2 2.5E+02 0.011 10.8 1.4 10 2-11 32-41 (52) 8 2hac_A T-cell surface glycopro 2.4 3.2E+02 0.013 10.3 3.1 20 2-21 7-26 (33) 9 1jb0_M Photosystem 1 reaction 2.1 3.6E+02 0.015 10.0 0.6 8 27-34 23-30 (31) 10 2pbd_P Profilin-1, profilin I; 2.0 3.8E+02 0.016 9.9 1.1 8 15-22 130-137 (139) No 1 >1bnx_A Protein (BAND 3); human erythrocyte anion transporter, transmembrane, synthetic peptide, electron transport; NMR {Synthetic} SCOP: j.35.1.1 Probab=19.93 E-value=48 Score=14.48 Aligned_cols=14 Identities=50% Similarity=0.944 Sum_probs=9.2 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 578999999999999 Q 537021.9.peg.1 4 DGIHDFLIFLYFAKY 18 (47) Q Consensus 4 dgihdfliflyfaky 18 (47) ..+.|+ ||+|||-- T Consensus 8 SD~~D~-iFiyfAcl 21 (34) T 1bnx_A 8 SDITDV-IFIYFAAL 21 (34) T ss_dssp HHHHHH-HHHHHHHH T ss_pred HHHHHH-HHHHHHHH T ss_conf 988899-99999985 No 2 >2jkg_A Profilin; proline-rich ligand, protein-binding, malaria, profilin, cytoskeleton, actin filament; 1.89A {Plasmodium falciparum} PDB: 2jkf_A Probab=7.41 E-value=1.1e+02 Score=12.60 Aligned_cols=14 Identities=50% Similarity=0.503 Sum_probs=9.8 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999988778 Q 537021.9.peg.1 11 IFLYFAKYLRESTR 24 (47) Q Consensus 11 iflyfakylrestr 24 (47) .-.-+|+||++|.. T Consensus 158 ~ve~LAdYL~~s~~ 171 (179) T 2jkg_A 158 AALTFAKELAESSQ 171 (179) T ss_dssp HHHHHHHHHHHC-- T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999987652 No 3 >3bz1_L Photosystem II reaction center protein L; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz2_L* 3kzi_L* Probab=5.84 E-value=1.5e+02 Score=11.89 Aligned_cols=11 Identities=64% Similarity=0.932 Sum_probs=7.2 Q ss_pred HHHHHHHCCHH Q ss_conf 99999824612 Q 537021.9.peg.1 31 TLLYLFSSNFF 41 (47) Q Consensus 31 tllylfssnff 41 (47) .+--+|||-|| T Consensus 26 vlavlfssyff 36 (37) T 3bz1_L 26 VLALLFSSYFF 36 (37) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHC T ss_conf 99999888604 No 4 >1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopin glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B* Probab=5.08 E-value=1.7e+02 Score=11.63 Aligned_cols=18 Identities=39% Similarity=0.709 Sum_probs=14.0 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999998877899999999 Q 537021.9.peg.1 15 FAKYLRESTRAFFSLATL 32 (47) Q Consensus 15 fakylrestraffslatl 32 (47) .-||+-..||.|+..|-+ T Consensus 11 lHk~vidGtRvFg~iA~~ 28 (41) T 1nkz_B 11 LHKYVIDGTRVFLGLALV 28 (41) T ss_dssp HHHHHHHHHHHHHHHHHH T ss_pred HHHHHHCCHHHHHHHHHH T ss_conf 998740633789999999 No 5 >2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Salmonella typhimurium LT2} SCOP: a.247.1.1 PDB: 2jn8_A Probab=4.73 E-value=1.5e+02 Score=12.01 Aligned_cols=13 Identities=31% Similarity=0.904 Sum_probs=7.6 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999998877899 Q 537021.9.peg.1 14 YFAKYLRESTRAF 26 (47) Q Consensus 14 yfakylrestraf 26 (47) ||..|.+|.-||. T Consensus 94 yFstYM~eeLkaL 106 (115) T 2es9_A 94 YFSTYMQEQLKEL 106 (115) T ss_dssp GSCHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999999 No 6 >2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B Probab=4.03 E-value=2.1e+02 Score=11.20 Aligned_cols=14 Identities=43% Similarity=0.759 Sum_probs=10.3 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999998 Q 537021.9.peg.1 7 HDFLIFLYFAKYLR 20 (47) Q Consensus 7 hdfliflyfakylr 20 (47) ..|||--||.|+-. T Consensus 4 atfliqeyfrkfkk 17 (26) T 2f3y_B 4 ATFLIQEYFRKFKK 17 (26) T ss_pred HHHHHHHHHHHHHH T ss_conf 58889999999998 No 7 >2o1k_A NS28, non-structural glycoprotein NSP4; rotavirus enterotoxin, nonstructural protein, tetrameric coiled-coil, virulence, viral protein; 1.67A {Simian rotavirus A} PDB: 2o1j_A 1g1j_A* 1g1i_A* Probab=3.23 E-value=2.5e+02 Score=10.80 Aligned_cols=10 Identities=50% Similarity=0.471 Sum_probs=4.9 Q ss_pred HHHHHHHHHH Q ss_conf 3357899999 Q 537021.9.peg.1 2 LLDGIHDFLI 11 (47) Q Consensus 2 lldgihdfli 11 (47) ||..|||-|| T Consensus 32 lLkri~d~li 41 (52) T 2o1k_A 32 LLKRIYDKLT 41 (52) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999871 No 8 >2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens} Probab=2.40 E-value=3.2e+02 Score=10.27 Aligned_cols=20 Identities=40% Similarity=0.439 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 33578999999999999988 Q 537021.9.peg.1 2 LLDGIHDFLIFLYFAKYLRE 21 (47) Q Consensus 2 lldgihdfliflyfakylre 21 (47) +||||-=..-..--|-|+|. T Consensus 7 lLDGiLFiYgviiTaLf~r~ 26 (33) T 2hac_A 7 LLDGILFIYGVILTALFLRV 26 (33) T ss_dssp HHHHHHHHHHHHHHHHHHHH T ss_pred EEHHHHHHHHHHHHHHHHHH T ss_conf 20308999999999999999 No 9 >1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 Probab=2.05 E-value=3.6e+02 Score=9.99 Aligned_cols=8 Identities=63% Similarity=0.974 Sum_probs=0.0 Q ss_pred HHHHHHHH Q ss_conf 99999999 Q 537021.9.peg.1 27 FSLATLLY 34 (47) Q Consensus 27 fslatlly 34 (47) |.|+|-|| T Consensus 23 frl~tely 30 (31) T 1jb0_M 23 FRLSTELY 30 (31) T ss_dssp HHHHHHHC T ss_pred HHHHHHHC T ss_conf 99999860 No 10 >2pbd_P Profilin-1, profilin I; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens} SCOP: d.110.1.1 PDB: 1fik_A 1cjf_A 1pfl_A 1fil_A* 2pav_P* 3chw_P* 1awi_A 1cf0_A* 1pne_A 1hlu_P 2btf_P* Probab=1.97 E-value=3.8e+02 Score=9.88 Aligned_cols=8 Identities=50% Similarity=0.551 Sum_probs=0.0 Q ss_pred HHHHHHHH Q ss_conf 99999887 Q 537021.9.peg.1 15 FAKYLRES 22 (47) Q Consensus 15 fakylres 22 (47) +|+|||++ T Consensus 130 ladYL~~~ 137 (139) T 2pbd_P 130 MASHLRRS 137 (139) T ss_dssp HHHHHHHT T ss_pred HHHHHHHC T ss_conf 99999874 Done!