BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 537021.9.peg.15_1 (47 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >537021.9.peg.15_1 Length = 47 Score = 89.0 bits (219), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 47/47 (100%), Positives = 47/47 (100%) Query: 1 MLLDGIHDFLIFLYFAKYLRESTRAFFSLATLLYLFSSNFFLSDRFL 47 MLLDGIHDFLIFLYFAKYLRESTRAFFSLATLLYLFSSNFFLSDRFL Sbjct: 1 MLLDGIHDFLIFLYFAKYLRESTRAFFSLATLLYLFSSNFFLSDRFL 47 >gi|254780896|ref|YP_003065309.1| ABC transporter membrane spanning protein (branched chain amino acid) [Candidatus Liberibacter asiaticus str. psy62] Length = 351 Score = 20.0 bits (40), Expect = 7.7, Method: Compositional matrix adjust. Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%) Query: 17 KYLRESTRAFFSL-ATLLYLFSSNFFLSDRFL 47 + +R++ +AFFSL T+++ S F +S F+ Sbjct: 211 RTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFI 242 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.343 0.153 0.453 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,098 Number of Sequences: 1233 Number of extensions: 712 Number of successful extensions: 4 Number of sequences better than 100.0: 4 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 4 length of query: 47 length of database: 328,796 effective HSP length: 20 effective length of query: 27 effective length of database: 304,136 effective search space: 8211672 effective search space used: 8211672 T: 11 A: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (22.0 bits) S2: 31 (16.5 bits)