Query         537021.9.peg.166_1
Match_columns 38
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 24 13:04:04 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_166.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3bz1_L Photosystem II reaction  12.3      91  0.0038   13.9   2.2   15    3-17     22-36  (37)
  2 1ldd_A APC2WHB, anaphase promo  11.8      31  0.0013   16.2  -0.5   30    1-30     30-59  (74)
  3 2pjp_A Selenocysteine-specific  11.6      95   0.004   13.8   2.1   13   17-29     96-108 (121)
  4 1d8j_A General transcription f  10.3      77  0.0032   14.3   1.1   11   25-35     34-44  (81)
  5 1lva_A Selenocysteine-specific   9.5 1.1E+02  0.0045   13.6   1.6   14   16-29    231-244 (258)
  6 2p06_A Hypothetical protein AF   4.2 2.3E+02  0.0099   12.0   1.0   10   24-33     84-93  (114)
  7 1si2_A Eukaryotic translation    3.5 2.4E+02    0.01   11.9   0.5   15   19-33      6-20  (149)
  8 1gvj_A C-ETS-1 protein, P54; t   3.3 2.7E+02   0.012   11.6   0.7   15   19-33     40-54  (146)
  9 2o35_A Hypothetical protein DU   3.2 2.6E+02   0.011   11.8   0.4   20   19-38     20-43  (105)
 10 2nny_A C-ETS-1 protein, P54; p   3.1 2.8E+02   0.012   11.6   0.6   16   19-34     65-80  (171)

No 1  
>3bz1_L Photosystem II reaction center protein L; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz2_L* 3kzi_L*
Probab=12.26  E-value=91  Score=13.94  Aligned_cols=15  Identities=40%  Similarity=0.842  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             899999999711269
Q 537021.9.peg.1    3 LRMFMLQIIFSKEFF   17 (38)
Q Consensus         3 lrmfmlqiifskeff   17 (38)
                      |-.|.+.+.||.-||
T Consensus        22 Llifvlavlfssyff   36 (37)
T 3bz1_L           22 LLILVLALLFSSYFF   36 (37)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC
T ss_conf             999999999888604


No 2  
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=11.84  E-value=31  Score=16.18  Aligned_cols=30  Identities=13%  Similarity=0.154  Sum_probs=14.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             948999999997112699999999999995
Q 537021.9.peg.1    1 MMLRMFMLQIIFSKEFFIIPLLQFLDEILD   30 (38)
Q Consensus         1 mmlrmfmlqiifskeffiipllqfldeild   30 (38)
                      +||+||+.+-.-.-+.-+--|-+||++..+
T Consensus        30 ~mLkmfv~~~~~~~~~t~~eL~~FL~~lV~   59 (74)
T 1ldd_A           30 SFLKITVPKDWGYNRITLQQLEGYLNTLAD   59 (74)
T ss_dssp             HHHHHHSCGGGCCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             999987579999887699999999999997


No 3  
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=11.62  E-value=95  Score=13.84  Aligned_cols=13  Identities=31%  Similarity=0.649  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999999
Q 537021.9.peg.1   17 FIIPLLQFLDEIL   29 (38)
Q Consensus        17 fiipllqfldeil   29 (38)
                      +.||+|.|+|..-
T Consensus        96 ~aIplLE~~D~~g  108 (121)
T 2pjp_A           96 LAIQILEYFDRIG  108 (121)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCC
T ss_conf             9999999987449


No 4  
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=10.27  E-value=77  Score=14.29  Aligned_cols=11  Identities=55%  Similarity=0.821  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999533420
Q 537021.9.peg.1   25 LDEILDVKNNF   35 (38)
Q Consensus        25 ldeildvknnf   35 (38)
                      ||||||--|..
T Consensus        34 LeEiLDEtn~~   44 (81)
T 1d8j_A           34 LDEILDETQHL   44 (81)
T ss_dssp             HHHHHHHHTCS
T ss_pred             HHHHHHHHHHC
T ss_conf             99999888634


No 5  
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=9.46  E-value=1.1e+02  Score=13.59  Aligned_cols=14  Identities=36%  Similarity=0.987  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             69999999999999
Q 537021.9.peg.1   16 FFIIPLLQFLDEIL   29 (38)
Q Consensus        16 ffiipllqfldeil   29 (38)
                      =+.||+|.++|..-
T Consensus       231 K~aIplLEy~D~~~  244 (258)
T 1lva_A          231 KYVLPLLEYLDQVK  244 (258)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCC
T ss_conf             99999999872169


No 6  
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted coding region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=4.19  E-value=2.3e+02  Score=11.95  Aligned_cols=10  Identities=60%  Similarity=0.880  Sum_probs=5.9

Q ss_pred             HHHHHHHHHH
Q ss_conf             9999995334
Q 537021.9.peg.1   24 FLDEILDVKN   33 (38)
Q Consensus        24 fldeildvkn   33 (38)
                      .-||.|||.|
T Consensus        84 lrdelldvan   93 (114)
T 2p06_A           84 LRDELLDVAN   93 (114)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9999999999


No 7  
>1si2_A Eukaryotic translation initiation factor 2C 1; protein-RNA complex, RNA interference, double helix, overhang, gene regulation/RNA/DNA complex; 2.60A {Homo sapiens} SCOP: b.34.14.1 PDB: 1si3_A
Probab=3.51  E-value=2.4e+02  Score=11.92  Aligned_cols=15  Identities=40%  Similarity=0.968  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999995334
Q 537021.9.peg.1   19 IPLLQFLDEILDVKN   33 (38)
Q Consensus        19 ipllqfldeildvkn   33 (38)
                      .|++.|+.++|+..|
T Consensus         6 ~Pvidf~~~~l~~~~   20 (149)
T 1si2_A            6 QPVIEFMCEVLDIRN   20 (149)
T ss_dssp             EEHHHHHHHHHTCSC
T ss_pred             CCHHHHHHHHHHHCC
T ss_conf             049999999972137


No 8  
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Probab=3.31  E-value=2.7e+02  Score=11.63  Aligned_cols=15  Identities=53%  Similarity=0.631  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999995334
Q 537021.9.peg.1   19 IPLLQFLDEILDVKN   33 (38)
Q Consensus        19 ipllqfldeildvkn   33 (38)
                      |.|.|||-|+|.-..
T Consensus        40 i~LWqFL~~LL~d~~   54 (146)
T 1gvj_A           40 IQLWQFLLELLTDKS   54 (146)
T ss_dssp             CCHHHHHHHHHTCGG
T ss_pred             EEHHHHHHHHHCCCC
T ss_conf             369999999976975


No 9  
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=3.21  E-value=2.6e+02  Score=11.77  Aligned_cols=20  Identities=50%  Similarity=0.707  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHH----HCCCC
Q ss_conf             999999999995334----20689
Q 537021.9.peg.1   19 IPLLQFLDEILDVKN----NFGGF   38 (38)
Q Consensus        19 ipllqfldeildvkn----nfggf   38 (38)
                      --|++.|++--||.|    |..||
T Consensus        20 RrL~~HL~~r~DVQNIDlMnLaGF   43 (105)
T 2o35_A           20 RRLLEHLRERSDVQNIDLMNLAGF   43 (105)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHSC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             999999862773057899999878


No 10 
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3mfk_A 1mdm_B
Probab=3.14  E-value=2.8e+02  Score=11.59  Aligned_cols=16  Identities=50%  Similarity=0.611  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999953342
Q 537021.9.peg.1   19 IPLLQFLDEILDVKNN   34 (38)
Q Consensus        19 ipllqfldeildvknn   34 (38)
                      |.|.|||-|.|+-..+
T Consensus        65 i~LW~FL~~LL~d~~~   80 (171)
T 2nny_A           65 IQLWQFLLELLTDKSS   80 (171)
T ss_dssp             CCHHHHHHHHHTCTGG
T ss_pred             EEHHHHHHHHHCCCCC
T ss_conf             2699999999769777


Done!