Query 537021.9.peg.166_1 Match_columns 38 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 24 13:04:04 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_166.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3bz1_L Photosystem II reaction 12.3 91 0.0038 13.9 2.2 15 3-17 22-36 (37) 2 1ldd_A APC2WHB, anaphase promo 11.8 31 0.0013 16.2 -0.5 30 1-30 30-59 (74) 3 2pjp_A Selenocysteine-specific 11.6 95 0.004 13.8 2.1 13 17-29 96-108 (121) 4 1d8j_A General transcription f 10.3 77 0.0032 14.3 1.1 11 25-35 34-44 (81) 5 1lva_A Selenocysteine-specific 9.5 1.1E+02 0.0045 13.6 1.6 14 16-29 231-244 (258) 6 2p06_A Hypothetical protein AF 4.2 2.3E+02 0.0099 12.0 1.0 10 24-33 84-93 (114) 7 1si2_A Eukaryotic translation 3.5 2.4E+02 0.01 11.9 0.5 15 19-33 6-20 (149) 8 1gvj_A C-ETS-1 protein, P54; t 3.3 2.7E+02 0.012 11.6 0.7 15 19-33 40-54 (146) 9 2o35_A Hypothetical protein DU 3.2 2.6E+02 0.011 11.8 0.4 20 19-38 20-43 (105) 10 2nny_A C-ETS-1 protein, P54; p 3.1 2.8E+02 0.012 11.6 0.6 16 19-34 65-80 (171) No 1 >3bz1_L Photosystem II reaction center protein L; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz2_L* 3kzi_L* Probab=12.26 E-value=91 Score=13.94 Aligned_cols=15 Identities=40% Similarity=0.842 Sum_probs=11.9 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 899999999711269 Q 537021.9.peg.1 3 LRMFMLQIIFSKEFF 17 (38) Q Consensus 3 lrmfmlqiifskeff 17 (38) |-.|.+.+.||.-|| T Consensus 22 Llifvlavlfssyff 36 (37) T 3bz1_L 22 LLILVLALLFSSYFF 36 (37) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHC T ss_conf 999999999888604 No 2 >1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34 Probab=11.84 E-value=31 Score=16.18 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=14.5 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 948999999997112699999999999995 Q 537021.9.peg.1 1 MMLRMFMLQIIFSKEFFIIPLLQFLDEILD 30 (38) Q Consensus 1 mmlrmfmlqiifskeffiipllqfldeild 30 (38) +||+||+.+-.-.-+.-+--|-+||++..+ T Consensus 30 ~mLkmfv~~~~~~~~~t~~eL~~FL~~lV~ 59 (74) T 1ldd_A 30 SFLKITVPKDWGYNRITLQQLEGYLNTLAD 59 (74) T ss_dssp HHHHHHSCGGGCCTTCCHHHHHHHHHHHHH T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 999987579999887699999999999997 No 3 >2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli} Probab=11.62 E-value=95 Score=13.84 Aligned_cols=13 Identities=31% Similarity=0.649 Sum_probs=10.9 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999999 Q 537021.9.peg.1 17 FIIPLLQFLDEIL 29 (38) Q Consensus 17 fiipllqfldeil 29 (38) +.||+|.|+|..- T Consensus 96 ~aIplLE~~D~~g 108 (121) T 2pjp_A 96 LAIQILEYFDRIG 108 (121) T ss_dssp HHHHHHHHHHHHT T ss_pred HHHHHHHHHHHCC T ss_conf 9999999987449 No 4 >1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A Probab=10.27 E-value=77 Score=14.29 Aligned_cols=11 Identities=55% Similarity=0.821 Sum_probs=7.8 Q ss_pred HHHHHHHHHHC Q ss_conf 99999533420 Q 537021.9.peg.1 25 LDEILDVKNNF 35 (38) Q Consensus 25 ldeildvknnf 35 (38) ||||||--|.. T Consensus 34 LeEiLDEtn~~ 44 (81) T 1d8j_A 34 LDEILDETQHL 44 (81) T ss_dssp HHHHHHHHTCS T ss_pred HHHHHHHHHHC T ss_conf 99999888634 No 5 >1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A Probab=9.46 E-value=1.1e+02 Score=13.59 Aligned_cols=14 Identities=36% Similarity=0.987 Sum_probs=10.4 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 69999999999999 Q 537021.9.peg.1 16 FFIIPLLQFLDEIL 29 (38) Q Consensus 16 ffiipllqfldeil 29 (38) =+.||+|.++|..- T Consensus 231 K~aIplLEy~D~~~ 244 (258) T 1lva_A 231 KYVLPLLEYLDQVK 244 (258) T ss_dssp HHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHCC T ss_conf 99999999872169 No 6 >2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted coding region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3 Probab=4.19 E-value=2.3e+02 Score=11.95 Aligned_cols=10 Identities=60% Similarity=0.880 Sum_probs=5.9 Q ss_pred HHHHHHHHHH Q ss_conf 9999995334 Q 537021.9.peg.1 24 FLDEILDVKN 33 (38) Q Consensus 24 fldeildvkn 33 (38) .-||.|||.| T Consensus 84 lrdelldvan 93 (114) T 2p06_A 84 LRDELLDVAN 93 (114) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999999 No 7 >1si2_A Eukaryotic translation initiation factor 2C 1; protein-RNA complex, RNA interference, double helix, overhang, gene regulation/RNA/DNA complex; 2.60A {Homo sapiens} SCOP: b.34.14.1 PDB: 1si3_A Probab=3.51 E-value=2.4e+02 Score=11.92 Aligned_cols=15 Identities=40% Similarity=0.968 Sum_probs=10.2 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999995334 Q 537021.9.peg.1 19 IPLLQFLDEILDVKN 33 (38) Q Consensus 19 ipllqfldeildvkn 33 (38) .|++.|+.++|+..| T Consensus 6 ~Pvidf~~~~l~~~~ 20 (149) T 1si2_A 6 QPVIEFMCEVLDIRN 20 (149) T ss_dssp EEHHHHHHHHHTCSC T ss_pred CCHHHHHHHHHHHCC T ss_conf 049999999972137 No 8 >1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A* Probab=3.31 E-value=2.7e+02 Score=11.63 Aligned_cols=15 Identities=53% Similarity=0.631 Sum_probs=11.3 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999995334 Q 537021.9.peg.1 19 IPLLQFLDEILDVKN 33 (38) Q Consensus 19 ipllqfldeildvkn 33 (38) |.|.|||-|+|.-.. T Consensus 40 i~LWqFL~~LL~d~~ 54 (146) T 1gvj_A 40 IQLWQFLLELLTDKS 54 (146) T ss_dssp CCHHHHHHHHHTCGG T ss_pred EEHHHHHHHHHCCCC T ss_conf 369999999976975 No 9 >2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1 Probab=3.21 E-value=2.6e+02 Score=11.77 Aligned_cols=20 Identities=50% Similarity=0.707 Sum_probs=13.8 Q ss_pred HHHHHHHHHHHHHHH----HCCCC Q ss_conf 999999999995334----20689 Q 537021.9.peg.1 19 IPLLQFLDEILDVKN----NFGGF 38 (38) Q Consensus 19 ipllqfldeildvkn----nfggf 38 (38) --|++.|++--||.| |..|| T Consensus 20 RrL~~HL~~r~DVQNIDlMnLaGF 43 (105) T 2o35_A 20 RRLLEHLRERSDVQNIDLMNLAGF 43 (105) T ss_dssp HHHHHHHHHTTTSCHHHHHHHHSC T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 999999862773057899999878 No 10 >2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3mfk_A 1mdm_B Probab=3.14 E-value=2.8e+02 Score=11.59 Aligned_cols=16 Identities=50% Similarity=0.611 Sum_probs=11.6 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999953342 Q 537021.9.peg.1 19 IPLLQFLDEILDVKNN 34 (38) Q Consensus 19 ipllqfldeildvknn 34 (38) |.|.|||-|.|+-..+ T Consensus 65 i~LW~FL~~LL~d~~~ 80 (171) T 2nny_A 65 IQLWQFLLELLTDKSS 80 (171) T ss_dssp CCHHHHHHHHHTCTGG T ss_pred EEHHHHHHHHHCCCCC T ss_conf 2699999999769777 Done!