Query 537021.9.peg.186_1 Match_columns 45 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 24 23:03:41 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_186.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3bua_E HSNM1B, DNA cross-LINK 5.6 1.4E+02 0.0058 13.6 0.6 17 17-33 2-18 (36) 2 1zfd_A SWI5; DNA binding motif 4.7 50 0.0021 15.8 -2.1 21 2-22 1-22 (32) 3 3do9_A UPF0302 protein BA_1542 4.6 1.6E+02 0.0067 13.3 0.4 20 14-33 7-26 (188) 4 3kwr_A Putative RNA-binding pr 3.9 2.5E+02 0.011 12.3 0.9 10 35-44 72-81 (97) 5 3b71_D T-cell surface glycopro 3.7 2.5E+02 0.011 12.3 0.8 11 14-24 4-14 (26) 6 3c5t_B Exendin-4, exenatide; l 3.6 2.9E+02 0.012 12.0 1.6 21 12-32 4-24 (31) 7 3p0c_A Nischarin; structural g 3.5 3E+02 0.012 11.9 1.2 13 20-34 118-130 (130) 8 1va1_A Transcription factor SP 3.4 88 0.0037 14.6 -1.8 21 2-22 6-27 (37) 9 1p7a_A BF3, BKLF, kruppel-like 2.8 1.4E+02 0.0059 13.6 -1.3 20 2-22 9-28 (37) 10 1q68_A T-cell surface glycopro 2.8 3.5E+02 0.015 11.6 0.9 12 14-25 11-22 (38) No 1 >3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens} Probab=5.58 E-value=1.4e+02 Score=13.60 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=12.9 Q ss_pred HHHHHHHHHHCCCCCCC Q ss_conf 33655786333800201 Q 537021.9.peg.1 17 QSKRLFLEFFLNPVDIN 33 (45) Q Consensus 17 qskrlflefflnpvdin 33 (45) ....|-|++.|.||++- T Consensus 2 efrgLALkYLLTPv~f~ 18 (36) T 3bua_E 2 EFRGLALKYLLTPVNFF 18 (36) T ss_pred CHHHHHHHHHHCHHHHH T ss_conf 50337599880428898 No 2 >1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 Probab=4.71 E-value=50 Score=15.77 Aligned_cols=21 Identities=29% Similarity=0.675 Sum_probs=13.6 Q ss_pred CCCEEEHH-HHHHHHHHHHHHH Q ss_conf 86546275-8899860336557 Q 537021.9.peg.1 2 EAPYYVTF-CCKKVFSQSKRLF 22 (45) Q Consensus 2 eapyyvtf-cckkvfsqskrlf 22 (45) |-||--++ -|.|.|+++..|- T Consensus 1 EkPf~C~~~gC~k~F~~~~~L~ 22 (32) T 1zfd_A 1 DRPYSCDHPGCDKAFVRNHDLI 22 (32) T ss_dssp CCSBCCCCTTCCCCBSSSHHHH T ss_pred CCCEECCCCCCCCEECCHHHHH T ss_conf 9385797899897738774889 No 3 >3do9_A UPF0302 protein BA_1542/GBAA1542/BAS1430; uncharacterized protein, structural genomics, protein structure initiative, PSI; 2.75A {Bacillus anthracis} Probab=4.62 E-value=1.6e+02 Score=13.26 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=13.8 Q ss_pred HHHHHHHHHHHHHCCCCCCC Q ss_conf 86033655786333800201 Q 537021.9.peg.1 14 VFSQSKRLFLEFFLNPVDIN 33 (45) Q Consensus 14 vfsqskrlflefflnpvdin 33 (45) |-.+.|+-|+++||+-.... T Consensus 7 vsv~~Kk~Fi~wfL~~y~lK 26 (188) T 3do9_A 7 VSVNEKKDFVKWFLNNYQLK 26 (188) T ss_dssp CCHHHHHHHHHHHHHHCCBS T ss_pred CCHHHHHHHHHHHHHHCCCC T ss_conf 56899999999999834544 No 4 >3kwr_A Putative RNA-binding protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: GOL; 1.45A {Lactobacillus plantarum} Probab=3.87 E-value=2.5e+02 Score=12.26 Aligned_cols=10 Identities=50% Similarity=0.920 Sum_probs=7.3 Q ss_pred CEEEEEEEEC Q ss_conf 2012301224 Q 537021.9.peg.1 35 MRSFVFWITN 44 (45) Q Consensus 35 mrsfvfwitn 44 (45) -..||.|||- T Consensus 72 stefvvwitm 81 (97) T 3kwr_A 72 STEFVVWITM 81 (97) T ss_dssp TTEEEEEEEC T ss_pred CCEEEEEEEE T ss_conf 3307999996 No 5 >3b71_D T-cell surface glycoprotein CD4; four-helix bundle, protein-protein complex, acetylation, alternative splicing, ATP-binding, cell junction, kinase; 2.82A {Homo sapiens} Probab=3.70 E-value=2.5e+02 Score=12.28 Aligned_cols=11 Identities=55% Similarity=0.549 Sum_probs=8.3 Q ss_pred HHHHHHHHHHH Q ss_conf 86033655786 Q 537021.9.peg.1 14 VFSQSKRLFLE 24 (45) Q Consensus 14 vfsqskrlfle 24 (45) -.||-|||.-| T Consensus 4 rmsqikrllse 14 (26) T 3b71_D 4 RMSQIKRLLSE 14 (26) T ss_pred HHHHHHHHHHH T ss_conf 89999999810 No 6 >3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain, G-protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B* Probab=3.61 E-value=2.9e+02 Score=12.01 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=13.5 Q ss_pred HHHHHHHHHHHHHHHCCCCCC Q ss_conf 998603365578633380020 Q 537021.9.peg.1 12 KKVFSQSKRLFLEFFLNPVDI 32 (45) Q Consensus 12 kkvfsqskrlflefflnpvdi 32 (45) |..-...-|||+|+.-|--.- T Consensus 4 kqmeeeavrlfiewlknggps 24 (31) T 3c5t_B 4 KQMEEEAVRLFIEWLKNGGPS 24 (31) T ss_dssp HHHHHHHHHHHHHHHHTTGGG T ss_pred HHHHHHHHHHHHHHHHCCCCC T ss_conf 899999999999999818988 No 7 >3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens} Probab=3.46 E-value=3e+02 Score=11.93 Aligned_cols=13 Identities=38% Similarity=0.623 Sum_probs=7.0 Q ss_pred HHHHHHHCCCCCCCC Q ss_conf 557863338002011 Q 537021.9.peg.1 20 RLFLEFFLNPVDING 34 (45) Q Consensus 20 rlflefflnpvding 34 (45) +-||| ++..|||| T Consensus 118 ~~FLe--~~~~~~~~ 130 (130) T 3p0c_A 118 AHFLH--FHFYEING 130 (130) T ss_dssp HHHHH--SCTTC--- T ss_pred HHHHC--CCCCCCCC T ss_conf 99858--87556687 No 8 >1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens} Probab=3.36 E-value=88 Score=14.56 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=13.3 Q ss_pred CCCEEEHH-HHHHHHHHHHHHH Q ss_conf 86546275-8899860336557 Q 537021.9.peg.1 2 EAPYYVTF-CCKKVFSQSKRLF 22 (45) Q Consensus 2 eapyyvtf-cckkvfsqskrlf 22 (45) +-||--++ -|.|.|+++..|- T Consensus 6 ~k~y~C~~~~C~k~F~~~~~L~ 27 (37) T 1va1_A 6 KKQHICHIQGCGKVYGKTSHLR 27 (37) T ss_dssp CCCEECCSTTCCCEESCHHHHH T ss_pred CCCCCCCCCCCCCEECCHHHHH T ss_conf 8887991989899759657867 No 9 >1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Probab=2.81 E-value=1.4e+02 Score=13.55 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=13.4 Q ss_pred CCCEEEHHHHHHHHHHHHHHH Q ss_conf 865462758899860336557 Q 537021.9.peg.1 2 EAPYYVTFCCKKVFSQSKRLF 22 (45) Q Consensus 2 eapyyvtfcckkvfsqskrlf 22 (45) |-||--.. |.|.|+++..|- T Consensus 9 ekPy~C~~-Cgk~F~~~~~L~ 28 (37) T 1p7a_A 9 IKPFQCPD-CDRSFSRSDHLA 28 (37) T ss_dssp SSSBCCTT-TCCCBSSHHHHH T ss_pred CCCEECCC-CCCEECCHHHHH T ss_conf 88947899-999917788889 No 10 >1q68_A T-cell surface glycoprotein CD4; peptide-peptide complex, helix-helix interaction, zinc coordination, beta hairpin; NMR {Homo sapiens} SCOP: j.48.1.1 Probab=2.80 E-value=3.5e+02 Score=11.56 Aligned_cols=12 Identities=50% Similarity=0.423 Sum_probs=8.5 Q ss_pred HHHHHHHHHHHH Q ss_conf 860336557863 Q 537021.9.peg.1 14 VFSQSKRLFLEF 25 (45) Q Consensus 14 vfsqskrlflef 25 (45) -.||-|||.-|- T Consensus 11 rmsqikrllsek 22 (38) T 1q68_A 11 RLSQIKRLLSEK 22 (38) T ss_dssp HHHHHHHHHHTT T ss_pred HHHHHHHHHHHC T ss_conf 999999998222 Done!