Query 537021.9.peg.191_1
Match_columns 44
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 24 19:52:44 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_191.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lfx_A Uncharacterized protein 6.8 1.6E+02 0.0067 12.9 1.6 25 7-31 180-204 (319)
2 2z5s_M MDM4 protein, zebrafish 5.5 1.9E+02 0.008 12.5 2.7 37 2-38 23-61 (140)
3 1sc3_B Interleukin-1 beta conv 4.9 1.7E+02 0.007 12.8 0.6 13 25-37 25-37 (88)
4 2yzs_A Putative uncharacterize 4.6 2.2E+02 0.0093 12.2 1.6 24 7-30 171-194 (315)
5 3nke_A Protein YGBT; crispr, C 4.4 2.3E+02 0.0096 12.1 1.9 26 7-32 83-108 (200)
6 2ql9_B Caspase-7; caspase-7, c 3.9 2.2E+02 0.0094 12.2 0.6 14 25-38 27-40 (97)
7 3cnf_A VP1; cytoplasmic polyhe 3.8 2.2E+02 0.0094 12.2 0.6 15 28-42 539-553 (1333)
8 1k8k_E P21, ARP2/3 complex 21 3.7 2.7E+02 0.011 11.8 1.7 12 25-36 66-77 (178)
9 2yrk_A Zinc finger homeobox pr 3.6 2.7E+02 0.011 11.8 0.9 17 21-37 26-42 (55)
10 2a50_A ASFP595, GFP-like non-f 3.6 1.2E+02 0.0052 13.5 -0.9 12 13-24 62-73 (73)
No 1
>3lfx_A Uncharacterized protein; CAS1, DNAse, prokaryotic immune system, structural genomics, PSI-2, protein structure initiative; 2.70A {Thermotoga maritima}
Probab=6.79 E-value=1.6e+02 Score=12.92 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHEEEHHHHHHHH
Q ss_conf 4799999533766423157778888
Q 537021.9.peg.1 7 SPFLKLLSFGFVLLSINCRDIIFSI 31 (44)
Q Consensus 7 spflkllsfgfvllsincrdiifsi 31 (44)
.|+-.+||||+-+|.-.|...+...
T Consensus 180 DpvNa~LsygY~lL~~~~~~ai~~~ 204 (319)
T 3lfx_A 180 NFANTLISFGNSLLYTTVLSLIYQT 204 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8899999999999999999999982
No 2
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=5.51 E-value=1.9e+02 Score=12.53 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHHHHHHH-EEEHHHHHHHHH-HHHHHH
Q ss_conf 2101147999995337664-231577788888-696201
Q 537021.9.peg.1 2 IVREFSPFLKLLSFGFVLL-SINCRDIIFSIW-YIQEVG 38 (44)
Q Consensus 2 ivrefspflkllsfgfvll-sincrdiifsiw-yiqevg 38 (44)
-||--+|++++|.+.=+-- .+.-.+++..|| ||.+-+
T Consensus 23 ~vrp~~~ll~ll~~~Ga~~~~~tr~eV~~~lw~YIk~~~ 61 (140)
T 2z5s_M 23 QVHPRAPLLQILKVAGAQEEVFTLKEVMHYLGQYIMMKQ 61 (140)
T ss_dssp CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHC
T ss_conf 233774999999982878755779999999999999846
No 3
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* 2h51_B* ...
Probab=4.89 E-value=1.7e+02 Score=12.80 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 7778888869620
Q 537021.9.peg.1 25 RDIIFSIWYIQEV 37 (44)
Q Consensus 25 rdiifsiwyiqev 37 (44)
||-.-.-||||++
T Consensus 25 R~~~~GSwfIq~l 37 (88)
T 1sc3_B 25 RHPTMGSVFIGRL 37 (88)
T ss_dssp EETTTEEHHHHHH
T ss_pred ECCCCCCHHHHHH
T ss_conf 6799998999999
No 4
>2yzs_A Putative uncharacterized protein; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; 2.00A {Aquifex aeolicus}
Probab=4.58 E-value=2.2e+02 Score=12.20 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHEEEHHHHHHH
Q ss_conf 479999953376642315777888
Q 537021.9.peg.1 7 SPFLKLLSFGFVLLSINCRDIIFS 30 (44)
Q Consensus 7 spflkllsfgfvllsincrdiifs 30 (44)
.|+-.+||||+.+|.-.|..-+.+
T Consensus 171 DpvNa~LsygY~lL~~~~~~al~~ 194 (315)
T 2yzs_A 171 NPLNALISFGNSLTYAKVLGEIYK 194 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 748889999999999999999998
No 5
>3nke_A Protein YGBT; crispr, CAS1, nuclease, DNA recombination, DNA repair, system; 1.40A {Escherichia coli}
Probab=4.44 E-value=2.3e+02 Score=12.14 Aligned_cols=26 Identities=12% Similarity=-0.079 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHEEEHHHHHHHHH
Q ss_conf 47999995337664231577788888
Q 537021.9.peg.1 7 SPFLKLLSFGFVLLSINCRDIIFSIW 32 (44)
Q Consensus 7 spflkllsfgfvllsincrdiifsiw 32 (44)
.|+-.+||||+.+|.-.|...|...-
T Consensus 83 DpvNa~Ls~gy~lLy~~~~~ai~~~G 108 (200)
T 3nke_A 83 DTINQCISAATSCLYGVTEAAILAAG 108 (200)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 73889999999999999999999839
No 6
>2ql9_B Caspase-7; caspase-7, cysteine protease, alternative splicing, apoptosis, cytoplasm, hydrolase, thiol protease, zymogen; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=3.87 E-value=2.2e+02 Score=12.18 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 77788888696201
Q 537021.9.peg.1 25 RDIIFSIWYIQEVG 38 (44)
Q Consensus 25 rdiifsiwyiqevg 38 (44)
||-.-.-||||+.-
T Consensus 27 R~~~~GSwfIq~Lc 40 (97)
T 2ql9_B 27 RSPGRGSWFVQALC 40 (97)
T ss_dssp EETTTEEHHHHHHH
T ss_pred ECCCCCCHHHHHHH
T ss_conf 46999989999999
No 7
>3cnf_A VP1; cytoplasmic polyhedrosis virus, capsid protein, turret protein, polyhedrin-binding domain, guanylyltransferase domain; 3.88A {Bombyx mori cypovirus 1}
Probab=3.85 E-value=2.2e+02 Score=12.18 Aligned_cols=15 Identities=47% Similarity=0.979 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHEEE
Q ss_conf 888886962010025
Q 537021.9.peg.1 28 IFSIWYIQEVGAFIT 42 (44)
Q Consensus 28 ifsiwyiqevgafit 42 (44)
+++.||-+|-|.||.
T Consensus 539 f~~~~~~~Eyg~FI~ 553 (1333)
T 3cnf_A 539 FFSRWYPVEYGIFVQ 553 (1333)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999984889989985
No 8
>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.148.1.1 PDB: 1tyq_E* 1u2v_E* 2p9i_E* 2p9k_E* 2p9l_E 2p9n_E* 2p9p_E* 2p9s_E* 2p9u_E* 3dxk_E* 3dxm_E*
Probab=3.68 E-value=2.7e+02 Score=11.80 Aligned_cols=12 Identities=42% Similarity=0.808 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q ss_conf 777888886962
Q 537021.9.peg.1 25 RDIIFSIWYIQE 36 (44)
Q Consensus 25 rdiifsiwyiqe 36 (44)
|-+|+-++||.|
T Consensus 66 RlLIYltlyis~ 77 (178)
T 1k8k_E 66 RTLIYITLYISE 77 (178)
T ss_dssp HHHHHHHHHHHH
T ss_pred EEEEEHHHHHHH
T ss_conf 465216999999
No 9
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=3.59 E-value=2.7e+02 Score=11.77 Aligned_cols=17 Identities=41% Similarity=0.483 Sum_probs=0.0
Q ss_pred EEEHHHHHHHHHHHHHH
Q ss_conf 23157778888869620
Q 537021.9.peg.1 21 SINCRDIIFSIWYIQEV 37 (44)
Q Consensus 21 sincrdiifsiwyiqev 37 (44)
.+.|||-|||---|..|
T Consensus 26 ~~svrdHiFs~qHI~~v 42 (55)
T 2yrk_A 26 RLSIRDHIFSKQHISKV 42 (55)
T ss_dssp SSCHHHHHTSHHHHHHH
T ss_pred CCCHHHHHCCHHHHHHH
T ss_conf 43335533119999999
No 10
>2a50_A ASFP595, GFP-like non-fluorescent chromoprotein FP595 chain 1; ASCP, fluorescent protein, photochromic protein, reversible photoswitch; HET: NRQ; 1.30A {Anemonia sulcata} PDB: 2a52_A* 2a53_A* 2a54_A* 2a56_A* 3cfa_L* 3cff_L* 3cfh_L*
Probab=3.59 E-value=1.2e+02 Score=13.46 Aligned_cols=12 Identities=50% Similarity=1.046 Sum_probs=0.0
Q ss_pred HHHHHHHHEEEH
Q ss_conf 953376642315
Q 537021.9.peg.1 13 LSFGFVLLSINC 24 (44)
Q Consensus 13 lsfgfvllsinc 24 (44)
|.|.|-+||..|
T Consensus 62 LPFsfDILs~ac 73 (73)
T 2a50_A 62 LPFAFHILSTSC 73 (73)
T ss_dssp CSSCGGGGGGGC
T ss_pred CCCCHHHCCCCC
T ss_conf 887578805569
Done!