Query         537021.9.peg.204_1
Match_columns 53
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed May 25 16:00:30 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_204.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1ik9_A DNA repair protein XRC  11.7      78  0.0023   14.6   0.7   27   19-48     11-37  (38)
  2 >3lhc_A Cyanovirin-N, CV-N; su   9.9      81  0.0024   14.5   0.3   12   17-28     16-27  (37)
  3 >1q3q_A Thermosome alpha subun   7.2   2E+02  0.0058   12.6   2.2   32    6-37     10-41  (151)
  4 >1dl2_A Class I alpha-1,2-mann   6.4      38  0.0011   16.2  -2.7   24   16-39     66-91  (117)
  5 >3ho1_A Argonaute; argonaute,    5.7 2.4E+02  0.0071   12.2   1.2   19   25-43     13-31  (96)
  6 >1nxc_A Mannosyl-oligosacchari   5.4      48  0.0014   15.7  -2.6   18   16-33     54-71  (90)
  7 >1a6d_B Thermosome (beta subun   5.1 2.6E+02  0.0078   12.0   1.3   31    6-36     10-40  (152)
  8 >2j04_A TAU60, YPL007P, hypoth   4.8 2.8E+02  0.0083   11.9   1.7   31   14-44     15-50  (100)
  9 >1u8b_A ADA polyprotein; prote   4.0 2.7E+02  0.0079   11.9   0.4   12   30-41      8-19  (52)
 10 >1xi4_A Clathrin heavy chain;    4.0      45  0.0013   15.8  -3.6   29    3-31     19-47  (75)

No 1  
>>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} (A:79-116)
Probab=11.70  E-value=78  Score=14.64  Aligned_cols=27  Identities=26%  Similarity=0.421  Sum_probs=18.0

Q ss_pred             EEEEEEEEEECCCCCCEEEEEEEEEEEHHH
Q ss_conf             862323222115876405888775224677
Q 537021.9.peg.2   19 LTKTCIFSYARNNTDSKIYHYRTISLHLSK   48 (53)
Q Consensus        19 ltktcifsyarnntdskiyhyrtislhlsk   48 (53)
                      -...|-|||.+|-.|-.   +|--|+.|.|
T Consensus        11 skes~hFs~eknLkdvS---FrLGS~~L~k   37 (38)
T 1ik9_A           11 SKESAYFFFEKNLKDVS---FRLGSFNLEK   37 (38)
T ss_dssp             ETTTTEEEEEEECSSCE---EEEEEEECEE
T ss_pred             CCCCEEEEHHCCCCHHE---EEECCCCHHH
T ss_conf             66301100340313102---5415642665


No 2  
>>3lhc_A Cyanovirin-N, CV-N; sugar binding protein, HIV-inactivating, GP120, antiviral protein, protein synthesis inhibitor, lectin; 1.34A {Nostoc ellipsosporum} PDB: 2rp3_A 3czz_A 1iiy_A* 1j4v_A 1l5b_A* 1l5e_A 1m5j_A* 1m5m_A* 2ezm_A 2ezn_A 3ezm_A 3gxy_A* 3gxz_A* 1lom_A 2rdk_A* 2pys_A* 2z21_A (A:1-37)
Probab=9.85  E-value=81  Score=14.55  Aligned_cols=12  Identities=42%  Similarity=0.493  Sum_probs=8.3

Q ss_pred             EEEEEEEEEEEE
Q ss_conf             688623232221
Q 537021.9.peg.2   17 VVLTKTCIFSYA   28 (53)
Q Consensus        17 vvltktcifsya   28 (53)
                      -|||.||+-.-.
T Consensus        16 svltstc~rtng   27 (37)
T 3lhc_A           16 SVLTSTCERTNG   27 (37)
T ss_dssp             TEEEEEEECTTS
T ss_pred             CEEEEEEECCCC
T ss_conf             999999738999


No 3  
>>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} (A:218-368)
Probab=7.21  E-value=2e+02  Score=12.63  Aligned_cols=32  Identities=19%  Similarity=0.265  Sum_probs=28.1

Q ss_pred             EEHHCCCCCCCEEEEEEEEEEEECCCCCCEEE
Q ss_conf             00320112461688623232221158764058
Q 537021.9.peg.2    6 FELMNRKLSNSVVLTKTCIFSYARNNTDSKIY   37 (53)
Q Consensus         6 felmnrklsnsvvltktcifsyarnntdskiy   37 (53)
                      .+-|.+++.|.-++.-.|-+++.+..+...+.
T Consensus        10 ~~~mpk~i~n~kI~ll~~~l~~~~~~~~~~~~   41 (151)
T 1q3q_A           10 HPRMPKRVENAKIALINEALEVKKTETDAKIN   41 (151)
T ss_dssp             STTSCSEESSEEEEEECSCBSCCCCSSCCCEE
T ss_pred             CCCCCCCCCCCEEEECCHHHHHHHHHHCCEEE
T ss_conf             87676430235012104023332343110233


No 4  
>>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} (A:275-391)
Probab=6.43  E-value=38  Score=16.22  Aligned_cols=24  Identities=21%  Similarity=0.433  Sum_probs=15.2

Q ss_pred             CEEEEEEEEEEEECCCCC--CEEEEE
Q ss_conf             168862323222115876--405888
Q 537021.9.peg.2   16 SVVLTKTCIFSYARNNTD--SKIYHY   39 (53)
Q Consensus        16 svvltktcifsyarnntd--skiyhy   39 (53)
                      ..-|++||+-+|++..|.  ..|+++
T Consensus        66 a~~Lt~tC~~~Y~~tpTGL~PEi~~f   91 (117)
T 1dl2_A           66 AKGITDTCYQMYKQSSSGLAPEIVVF   91 (117)
T ss_dssp             HHHHHHHHHHHHHTSTTSCCCSEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             98999999999973627778615651


No 5  
>>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, plasmid; 2.60A {Thermus thermophilus HB27} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A (A:178-273)
Probab=5.68  E-value=2.4e+02  Score=12.18  Aligned_cols=19  Identities=16%  Similarity=0.226  Sum_probs=11.0

Q ss_pred             EEEECCCCCCEEEEEEEEE
Q ss_conf             2221158764058887752
Q 537021.9.peg.2   25 FSYARNNTDSKIYHYRTIS   43 (53)
Q Consensus        25 fsyarnntdskiyhyrtis   43 (53)
                      -+|.||+-|.+-+.|+.|+
T Consensus        13 ~k~vRNtYd~rtW~~~~~~   31 (96)
T 3ho1_A           13 PKRVRNAYDRRTWELLRLG   31 (96)
T ss_dssp             CSEEEESSSCCEECCCEEE
T ss_pred             CCEEEEECCCEEEEEEECC
T ss_conf             9789984698179993546


No 6  
>>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein structure initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} (A:273-362)
Probab=5.39  E-value=48  Score=15.68  Aligned_cols=18  Identities=28%  Similarity=0.493  Sum_probs=13.0

Q ss_pred             CEEEEEEEEEEEECCCCC
Q ss_conf             168862323222115876
Q 537021.9.peg.2   16 SVVLTKTCIFSYARNNTD   33 (53)
Q Consensus        16 svvltktcifsyarnntd   33 (53)
                      ..-||+||.-+|++..|.
T Consensus        54 a~~Lt~tC~~~Y~~tpTG   71 (90)
T 1nxc_A           54 GAEIARTCHESYNRTYVK   71 (90)
T ss_dssp             HHHHHHHHHHHHHTSSSS
T ss_pred             HHHHHHHHHHHHHHCCCC
T ss_conf             999999999999844102


No 7  
>>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, protein folding, ATPase; 2.60A {Thermoplasma acidophilum} (B:216-367)
Probab=5.13  E-value=2.6e+02  Score=11.99  Aligned_cols=31  Identities=6%  Similarity=0.085  Sum_probs=25.8

Q ss_pred             EEHHCCCCCCCEEEEEEEEEEEECCCCCCEE
Q ss_conf             0032011246168862323222115876405
Q 537021.9.peg.2    6 FELMNRKLSNSVVLTKTCIFSYARNNTDSKI   36 (53)
Q Consensus         6 felmnrklsnsvvltktcifsyarnntdski   36 (53)
                      .+-|-+++.|.-++.-.|-++|.+..+.+++
T Consensus        10 ~~~m~k~i~n~kI~ll~~~Le~~k~~~~~~~   40 (152)
T 1a6d_B           10 HPGMPDVVKDAKIALLDAPLEIKKPEFDTNL   40 (152)
T ss_dssp             STTSCSEEEEEEEEEESSCBSCCCCSSEEEE
T ss_pred             CCCCCCCCCCCEEECCCCCHHHHHHHHCCEE
T ss_conf             4567522001145304541134321000111


No 8  
>>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetical protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} (A:127-226)
Probab=4.76  E-value=2.8e+02  Score=11.85  Aligned_cols=31  Identities=23%  Similarity=0.451  Sum_probs=20.8

Q ss_pred             CCCEEEEE----EEEEEEECCCCCCEEEEEEE-EEE
Q ss_conf             46168862----32322211587640588877-522
Q 537021.9.peg.2   14 SNSVVLTK----TCIFSYARNNTDSKIYHYRT-ISL   44 (53)
Q Consensus        14 snsvvltk----tcifsyarnntdskiyhyrt-isl   44 (53)
                      ++..++-.    --|||-++|+.+.-++|+.+ |++
T Consensus        15 ~~~i~vGNE~~el~iFsv~~n~~~~~~~~~~~~i~l   50 (100)
T 2j04_A           15 ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRL   50 (100)
T ss_dssp             SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEEC
T ss_pred             CCEEEEECCCCCEEEEEEECCCCCCEEEEEECCEEH
T ss_conf             637999858994899997145787405897133352


No 9  
>>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A (A:17-68)
Probab=4.01  E-value=2.7e+02  Score=11.94  Aligned_cols=12  Identities=8%  Similarity=0.157  Sum_probs=7.5

Q ss_pred             CCCCCEEEEEEE
Q ss_conf             587640588877
Q 537021.9.peg.2   30 NNTDSKIYHYRT   41 (53)
Q Consensus        30 nntdskiyhyrt   41 (53)
                      -|+.++|||+-+
T Consensus         8 g~~~t~ifc~P~   19 (52)
T 1u8b_A            8 AVRTTGIFXRPS   19 (52)
T ss_dssp             EETTTTEEECTT
T ss_pred             EECCCCCCCCCC
T ss_conf             651458512789


No 10 
>>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis/exocytosis complex; 7.90A {Bos taurus} (A:1135-1209)
Probab=4.00  E-value=45  Score=15.85  Aligned_cols=29  Identities=28%  Similarity=0.406  Sum_probs=0.0

Q ss_pred             EEEEEHHCCCCCCCEEEEEEEEEEEECCC
Q ss_conf             00000320112461688623232221158
Q 537021.9.peg.2    3 LMYFELMNRKLSNSVVLTKTCIFSYARNN   31 (53)
Q Consensus         3 lmyfelmnrklsnsvvltktcifsyarnn   31 (53)
                      |.-|-.|-||-+.-...-..-||+||+-|
T Consensus        19 Lv~YL~MaRk~~ke~~IdteLi~aYAk~~   47 (75)
T 1xi4_A           19 LVKYLQMARKKARESYVETELIFALAKTN   47 (75)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf             99999999876465243899999998417


Done!