Query 537021.9.peg.204_1 Match_columns 53 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 16:00:30 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_204.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1ik9_A DNA repair protein XRC 11.7 78 0.0023 14.6 0.7 27 19-48 11-37 (38) 2 >3lhc_A Cyanovirin-N, CV-N; su 9.9 81 0.0024 14.5 0.3 12 17-28 16-27 (37) 3 >1q3q_A Thermosome alpha subun 7.2 2E+02 0.0058 12.6 2.2 32 6-37 10-41 (151) 4 >1dl2_A Class I alpha-1,2-mann 6.4 38 0.0011 16.2 -2.7 24 16-39 66-91 (117) 5 >3ho1_A Argonaute; argonaute, 5.7 2.4E+02 0.0071 12.2 1.2 19 25-43 13-31 (96) 6 >1nxc_A Mannosyl-oligosacchari 5.4 48 0.0014 15.7 -2.6 18 16-33 54-71 (90) 7 >1a6d_B Thermosome (beta subun 5.1 2.6E+02 0.0078 12.0 1.3 31 6-36 10-40 (152) 8 >2j04_A TAU60, YPL007P, hypoth 4.8 2.8E+02 0.0083 11.9 1.7 31 14-44 15-50 (100) 9 >1u8b_A ADA polyprotein; prote 4.0 2.7E+02 0.0079 11.9 0.4 12 30-41 8-19 (52) 10 >1xi4_A Clathrin heavy chain; 4.0 45 0.0013 15.8 -3.6 29 3-31 19-47 (75) No 1 >>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} (A:79-116) Probab=11.70 E-value=78 Score=14.64 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=18.0 Q ss_pred EEEEEEEEEECCCCCCEEEEEEEEEEEHHH Q ss_conf 862323222115876405888775224677 Q 537021.9.peg.2 19 LTKTCIFSYARNNTDSKIYHYRTISLHLSK 48 (53) Q Consensus 19 ltktcifsyarnntdskiyhyrtislhlsk 48 (53) -...|-|||.+|-.|-. +|--|+.|.| T Consensus 11 skes~hFs~eknLkdvS---FrLGS~~L~k 37 (38) T 1ik9_A 11 SKESAYFFFEKNLKDVS---FRLGSFNLEK 37 (38) T ss_dssp ETTTTEEEEEEECSSCE---EEEEEEECEE T ss_pred CCCCEEEEHHCCCCHHE---EEECCCCHHH T ss_conf 66301100340313102---5415642665 No 2 >>3lhc_A Cyanovirin-N, CV-N; sugar binding protein, HIV-inactivating, GP120, antiviral protein, protein synthesis inhibitor, lectin; 1.34A {Nostoc ellipsosporum} PDB: 2rp3_A 3czz_A 1iiy_A* 1j4v_A 1l5b_A* 1l5e_A 1m5j_A* 1m5m_A* 2ezm_A 2ezn_A 3ezm_A 3gxy_A* 3gxz_A* 1lom_A 2rdk_A* 2pys_A* 2z21_A (A:1-37) Probab=9.85 E-value=81 Score=14.55 Aligned_cols=12 Identities=42% Similarity=0.493 Sum_probs=8.3 Q ss_pred EEEEEEEEEEEE Q ss_conf 688623232221 Q 537021.9.peg.2 17 VVLTKTCIFSYA 28 (53) Q Consensus 17 vvltktcifsya 28 (53) -|||.||+-.-. T Consensus 16 svltstc~rtng 27 (37) T 3lhc_A 16 SVLTSTCERTNG 27 (37) T ss_dssp TEEEEEEECTTS T ss_pred CEEEEEEECCCC T ss_conf 999999738999 No 3 >>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} (A:218-368) Probab=7.21 E-value=2e+02 Score=12.63 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=28.1 Q ss_pred EEHHCCCCCCCEEEEEEEEEEEECCCCCCEEE Q ss_conf 00320112461688623232221158764058 Q 537021.9.peg.2 6 FELMNRKLSNSVVLTKTCIFSYARNNTDSKIY 37 (53) Q Consensus 6 felmnrklsnsvvltktcifsyarnntdskiy 37 (53) .+-|.+++.|.-++.-.|-+++.+..+...+. T Consensus 10 ~~~mpk~i~n~kI~ll~~~l~~~~~~~~~~~~ 41 (151) T 1q3q_A 10 HPRMPKRVENAKIALINEALEVKKTETDAKIN 41 (151) T ss_dssp STTSCSEESSEEEEEECSCBSCCCCSSCCCEE T ss_pred CCCCCCCCCCCEEEECCHHHHHHHHHHCCEEE T ss_conf 87676430235012104023332343110233 No 4 >>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} (A:275-391) Probab=6.43 E-value=38 Score=16.22 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=15.2 Q ss_pred CEEEEEEEEEEEECCCCC--CEEEEE Q ss_conf 168862323222115876--405888 Q 537021.9.peg.2 16 SVVLTKTCIFSYARNNTD--SKIYHY 39 (53) Q Consensus 16 svvltktcifsyarnntd--skiyhy 39 (53) ..-|++||+-+|++..|. ..|+++ T Consensus 66 a~~Lt~tC~~~Y~~tpTGL~PEi~~f 91 (117) T 1dl2_A 66 AKGITDTCYQMYKQSSSGLAPEIVVF 91 (117) T ss_dssp HHHHHHHHHHHHHTSTTSCCCSEEEE T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEE T ss_conf 98999999999973627778615651 No 5 >>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, plasmid; 2.60A {Thermus thermophilus HB27} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A (A:178-273) Probab=5.68 E-value=2.4e+02 Score=12.18 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=11.0 Q ss_pred EEEECCCCCCEEEEEEEEE Q ss_conf 2221158764058887752 Q 537021.9.peg.2 25 FSYARNNTDSKIYHYRTIS 43 (53) Q Consensus 25 fsyarnntdskiyhyrtis 43 (53) -+|.||+-|.+-+.|+.|+ T Consensus 13 ~k~vRNtYd~rtW~~~~~~ 31 (96) T 3ho1_A 13 PKRVRNAYDRRTWELLRLG 31 (96) T ss_dssp CSEEEESSSCCEECCCEEE T ss_pred CCEEEEECCCEEEEEEECC T ss_conf 9789984698179993546 No 6 >>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein structure initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} (A:273-362) Probab=5.39 E-value=48 Score=15.68 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=13.0 Q ss_pred CEEEEEEEEEEEECCCCC Q ss_conf 168862323222115876 Q 537021.9.peg.2 16 SVVLTKTCIFSYARNNTD 33 (53) Q Consensus 16 svvltktcifsyarnntd 33 (53) ..-||+||.-+|++..|. T Consensus 54 a~~Lt~tC~~~Y~~tpTG 71 (90) T 1nxc_A 54 GAEIARTCHESYNRTYVK 71 (90) T ss_dssp HHHHHHHHHHHHHTSSSS T ss_pred HHHHHHHHHHHHHHCCCC T ss_conf 999999999999844102 No 7 >>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, protein folding, ATPase; 2.60A {Thermoplasma acidophilum} (B:216-367) Probab=5.13 E-value=2.6e+02 Score=11.99 Aligned_cols=31 Identities=6% Similarity=0.085 Sum_probs=25.8 Q ss_pred EEHHCCCCCCCEEEEEEEEEEEECCCCCCEE Q ss_conf 0032011246168862323222115876405 Q 537021.9.peg.2 6 FELMNRKLSNSVVLTKTCIFSYARNNTDSKI 36 (53) Q Consensus 6 felmnrklsnsvvltktcifsyarnntdski 36 (53) .+-|-+++.|.-++.-.|-++|.+..+.+++ T Consensus 10 ~~~m~k~i~n~kI~ll~~~Le~~k~~~~~~~ 40 (152) T 1a6d_B 10 HPGMPDVVKDAKIALLDAPLEIKKPEFDTNL 40 (152) T ss_dssp STTSCSEEEEEEEEEESSCBSCCCCSSEEEE T ss_pred CCCCCCCCCCCEEECCCCCHHHHHHHHCCEE T ss_conf 4567522001145304541134321000111 No 8 >>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetical protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} (A:127-226) Probab=4.76 E-value=2.8e+02 Score=11.85 Aligned_cols=31 Identities=23% Similarity=0.451 Sum_probs=20.8 Q ss_pred CCCEEEEE----EEEEEEECCCCCCEEEEEEE-EEE Q ss_conf 46168862----32322211587640588877-522 Q 537021.9.peg.2 14 SNSVVLTK----TCIFSYARNNTDSKIYHYRT-ISL 44 (53) Q Consensus 14 snsvvltk----tcifsyarnntdskiyhyrt-isl 44 (53) ++..++-. --|||-++|+.+.-++|+.+ |++ T Consensus 15 ~~~i~vGNE~~el~iFsv~~n~~~~~~~~~~~~i~l 50 (100) T 2j04_A 15 ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRL 50 (100) T ss_dssp SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEEC T ss_pred CCEEEEECCCCCEEEEEEECCCCCCEEEEEECCEEH T ss_conf 637999858994899997145787405897133352 No 9 >>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A (A:17-68) Probab=4.01 E-value=2.7e+02 Score=11.94 Aligned_cols=12 Identities=8% Similarity=0.157 Sum_probs=7.5 Q ss_pred CCCCCEEEEEEE Q ss_conf 587640588877 Q 537021.9.peg.2 30 NNTDSKIYHYRT 41 (53) Q Consensus 30 nntdskiyhyrt 41 (53) -|+.++|||+-+ T Consensus 8 g~~~t~ifc~P~ 19 (52) T 1u8b_A 8 AVRTTGIFXRPS 19 (52) T ss_dssp EETTTTEEECTT T ss_pred EECCCCCCCCCC T ss_conf 651458512789 No 10 >>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis/exocytosis complex; 7.90A {Bos taurus} (A:1135-1209) Probab=4.00 E-value=45 Score=15.85 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=0.0 Q ss_pred EEEEEHHCCCCCCCEEEEEEEEEEEECCC Q ss_conf 00000320112461688623232221158 Q 537021.9.peg.2 3 LMYFELMNRKLSNSVVLTKTCIFSYARNN 31 (53) Q Consensus 3 lmyfelmnrklsnsvvltktcifsyarnn 31 (53) |.-|-.|-||-+.-...-..-||+||+-| T Consensus 19 Lv~YL~MaRk~~ke~~IdteLi~aYAk~~ 47 (75) T 1xi4_A 19 LVKYLQMARKKARESYVETELIFALAKTN 47 (75) T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHC T ss_conf 99999999876465243899999998417 Done!