Query 537021.9.peg.204_1
Match_columns 53
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed May 25 16:01:14 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_204.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3he1_A Major exported HCP3 pro 3.7 2.4E+02 0.01 11.4 3.5 25 21-45 114-138 (195)
2 1xkm_B Distinctin chain B; por 2.8 1.1E+02 0.0047 13.1 -1.8 12 5-16 12-23 (26)
3 2h88_C Succinate dehydrogenase 2.8 1.9E+02 0.008 11.9 -0.6 12 39-50 20-31 (140)
4 2pqr_C WD repeat protein YKR03 2.7 2.7E+02 0.011 11.2 0.1 15 21-35 8-22 (64)
5 2om2_B Regulator of G-protein 2.5 1.9E+02 0.0079 11.9 -0.9 13 5-17 5-17 (36)
6 2wdq_C Succinate dehydrogenase 2.5 2.7E+02 0.011 11.2 -0.2 10 40-49 9-18 (129)
7 2v2f_A Penicillin binding prot 2.4 2.7E+02 0.011 11.2 -0.3 6 32-37 5-10 (26)
8 2r2v_A GCN4 leucine zipper; co 2.3 1.4E+02 0.0057 12.7 -1.9 5 34-38 15-19 (34)
9 1dj0_A Pseudouridine synthase 2.3 3.6E+02 0.015 10.5 2.4 36 5-40 77-115 (264)
10 1zoy_C Large cytochrome bindin 2.1 2.6E+02 0.011 11.2 -0.6 10 40-49 21-30 (140)
No 1
>3he1_A Major exported HCP3 protein; structural genomics, APC22128, HCPC, secretion, virulence, PSI-2, protein structure initiative; 2.10A {Pseudomonas aeruginosa}
Probab=3.71 E-value=2.4e+02 Score=11.40 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=16.6
Q ss_pred EEEEEEEECCCCCCEEEEEEEEEEE
Q ss_conf 2323222115876405888775224
Q 537021.9.peg.2 21 KTCIFSYARNNTDSKIYHYRTISLH 45 (53)
Q Consensus 21 ktcifsyarnntdskiyhyrtislh 45 (53)
++|.|.+.|.+.+.+...|-+|.|.
T Consensus 114 ~~v~l~~yRt~~~G~~e~Y~~I~L~ 138 (195)
T 3he1_A 114 TKVEIQWYRTSAAGTQEHYYTTVLE 138 (195)
T ss_dssp EEEEEEEEEECTTSSEEEEEEEEEE
T ss_pred CEEEEEEEEECCCCCEEEEEEEEEE
T ss_conf 6699999995899973789999995
No 2
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=2.83 E-value=1.1e+02 Score=13.09 Aligned_cols=12 Identities=50% Similarity=0.880 Sum_probs=8.1
Q ss_pred EEEHHCCCCCCC
Q ss_conf 000320112461
Q 537021.9.peg.2 5 YFELMNRKLSNS 16 (53)
Q Consensus 5 yfelmnrklsns 16 (53)
|.|-..|||.|.
T Consensus 12 yleqlhrklknc 23 (26)
T 1xkm_B 12 YLEQLHRKLKNC 23 (26)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998657
No 3
>2h88_C Succinate dehydrogenase cytochrome B, large subunit; complex II, membrane protein, heme protein, iron sulfur protein, oxidoreductase, redox enzyme; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 2h89_C* 1yq3_C* 1yq4_C* 2fbw_C* 2wqy_C*
Probab=2.79 E-value=1.9e+02 Score=11.92 Aligned_cols=12 Identities=42% Similarity=0.562 Sum_probs=8.6
Q ss_pred EEEEEEEHHHHH
Q ss_conf 877522467763
Q 537021.9.peg.2 39 YRTISLHLSKYL 50 (53)
Q Consensus 39 yrtislhlskyl 50 (53)
-|.+|.||..|-
T Consensus 20 ~RPlSPhL~Iyk 31 (140)
T 2h88_C 20 SRPLSPHISIYK 31 (140)
T ss_dssp CCCBCCCTTTSC
T ss_pred CCCCCCCCCEEC
T ss_conf 999998436045
No 4
>2pqr_C WD repeat protein YKR036C; TPR domain, protein-protein complex, apoptosis; 1.88A {Saccharomyces cerevisiae}
Probab=2.71 E-value=2.7e+02 Score=11.17 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=11.0
Q ss_pred EEEEEEEECCCCCCE
Q ss_conf 232322211587640
Q 537021.9.peg.2 21 KTCIFSYARNNTDSK 35 (53)
Q Consensus 21 ktcifsyarnntdsk 35 (53)
..-|||+..|-.||.
T Consensus 8 qvgifsfqnnyadsa 22 (64)
T 2pqr_C 8 QVGIFSFQNNYADSA 22 (64)
T ss_dssp -------------CC
T ss_pred EEEEEEEECCCCCHH
T ss_conf 067998404554305
No 5
>2om2_B Regulator of G-protein signalling 14 goloco motif peptide; arginine finger, RGS14 goloco, signaling protein; HET: GDP; 2.20A {Homo sapiens} PDB: 1kjy_B*
Probab=2.52 E-value=1.9e+02 Score=11.95 Aligned_cols=13 Identities=38% Similarity=0.496 Sum_probs=8.7
Q ss_pred EEEHHCCCCCCCE
Q ss_conf 0003201124616
Q 537021.9.peg.2 5 YFELMNRKLSNSV 17 (53)
Q Consensus 5 yfelmnrklsnsv 17 (53)
.|||++|.-|+.+
T Consensus 5 ~~ellsraQs~r~ 17 (36)
T 2om2_B 5 LVELLNRVQSSGA 17 (36)
T ss_dssp HHHHHHHHHTCSC
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999871653
No 6
>2wdq_C Succinate dehydrogenase cytochrome B556 subunit; succinate dehydrogenase activity, cell inner membrane, tricarboxylic acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_C* 2acz_C* 1nek_C* 2wdr_C* 2wdv_C* 2wp9_C* 2ws3_C* 2wu5_C* 2wu2_C*
Probab=2.47 E-value=2.7e+02 Score=11.16 Aligned_cols=10 Identities=30% Similarity=0.560 Sum_probs=0.0
Q ss_pred EEEEEEHHHH
Q ss_conf 7752246776
Q 537021.9.peg.2 40 RTISLHLSKY 49 (53)
Q Consensus 40 rtislhlsky 49 (53)
|.+|.||..|
T Consensus 9 RPlsphL~iy 18 (129)
T 2wdq_C 9 RPVNLDLQTI 18 (129)
T ss_dssp CCBCCCGGGS
T ss_pred CCCCCCCCCC
T ss_conf 9999986605
No 7
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=2.36 E-value=2.7e+02 Score=11.18 Aligned_cols=6 Identities=83% Similarity=1.121 Sum_probs=0.0
Q ss_pred CCCEEE
Q ss_conf 764058
Q 537021.9.peg.2 32 TDSKIY 37 (53)
Q Consensus 32 tdskiy 37 (53)
|.||||
T Consensus 5 tsskiy 10 (26)
T 2v2f_A 5 TSSKIY 10 (26)
T ss_pred CCHHHH
T ss_conf 211344
No 8
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=2.27 E-value=1.4e+02 Score=12.66 Aligned_cols=5 Identities=80% Similarity=1.464 Sum_probs=0.0
Q ss_pred CEEEE
Q ss_conf 40588
Q 537021.9.peg.2 34 SKIYH 38 (53)
Q Consensus 34 skiyh 38 (53)
||+||
T Consensus 15 SK~yH 19 (34)
T 2r2v_A 15 SKLYH 19 (34)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99988
No 9
>1dj0_A Pseudouridine synthase I; alpha/beta fold, RNA-binding motif, RNA-modifying enzyme, lyase; 1.50A {Escherichia coli} SCOP: d.265.1.1 PDB: 2nqp_A 2nr0_A 2nre_A
Probab=2.26 E-value=3.6e+02 Score=10.52 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred EEEHHCCCCCCCEEEEEEEEEEE---ECCCCCCEEEEEE
Q ss_conf 00032011246168862323222---1158764058887
Q 537021.9.peg.2 5 YFELMNRKLSNSVVLTKTCIFSY---ARNNTDSKIYHYR 40 (53)
Q Consensus 5 yfelmnrklsnsvvltktcifsy---arnntdskiyhyr 40 (53)
+...+|+.|...+.....+.-+- ||-...++.|.|+
T Consensus 77 ~~~~ln~~Lp~dI~i~~~~~v~~~F~aR~~a~~r~Y~Y~ 115 (264)
T 1dj0_A 77 WTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYI 115 (264)
T ss_dssp HHHHHHHTSCTTEEEEEEEECCTTCCTTTTCCEEEEEEE
T ss_pred HHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEE
T ss_conf 988887309824788554205998660103787999987
No 10
>1zoy_C Large cytochrome binding protein, FAD-binding protein; succinate, ubiquinone oxidoreductase, mitochondrial respiratory complex II; HET: FAD HEM EPH UQ1; 2.40A {Sus scrofa} PDB: 1zp0_C*
Probab=2.11 E-value=2.6e+02 Score=11.20 Aligned_cols=10 Identities=40% Similarity=0.783 Sum_probs=0.0
Q ss_pred EEEEEEHHHH
Q ss_conf 7752246776
Q 537021.9.peg.2 40 RTISLHLSKY 49 (53)
Q Consensus 40 rtislhlsky 49 (53)
|.+|.||..|
T Consensus 21 RPlSPHL~iy 30 (140)
T 1zoy_C 21 RPLSPHITIY 30 (140)
T ss_dssp CCBCCCTTTS
T ss_pred CCCCCCCCCC
T ss_conf 9999834705
Done!