RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.204_1
         (53 letters)



>gnl|CDD|176965 CHL00023, ndhK, NADH dehydrogenase subunit K.
          Length = 225

 Score = 24.7 bits (54), Expect = 5.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 1  MGLMYFELMNRKLSNSVVLT 20
          M  + F L++R  SNSV+ T
Sbjct: 1  MNSIEFPLLDRTTSNSVIST 20


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.324    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 558,545
Number of extensions: 17654
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 2
Length of query: 53
Length of database: 6,263,737
Length adjustment: 26
Effective length of query: 27
Effective length of database: 5,701,903
Effective search space: 153951381
Effective search space used: 153951381
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.5 bits)