RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= 537021.9.peg.204_1 (53 letters) >gnl|CDD|176965 CHL00023, ndhK, NADH dehydrogenase subunit K. Length = 225 Score = 24.7 bits (54), Expect = 5.5 Identities = 9/20 (45%), Positives = 13/20 (65%) Query: 1 MGLMYFELMNRKLSNSVVLT 20 M + F L++R SNSV+ T Sbjct: 1 MNSIEFPLLDRTTSNSVIST 20 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.324 0.133 0.380 Gapped Lambda K H 0.267 0.0686 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 558,545 Number of extensions: 17654 Number of successful extensions: 48 Number of sequences better than 10.0: 1 Number of HSP's gapped: 48 Number of HSP's successfully gapped: 2 Length of query: 53 Length of database: 6,263,737 Length adjustment: 26 Effective length of query: 27 Effective length of database: 5,701,903 Effective search space: 153951381 Effective search space used: 153951381 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 51 (23.5 bits)