Query 537021.9.peg.21_1
Match_columns 44
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Sun May 22 12:06:35 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_21.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2kke_A Uncharacterized protei 16.5 49 0.0015 15.5 0.8 12 5-16 42-53 (53)
2 >2ilk_A Interleukin-10; cytoki 11.9 1.2E+02 0.0036 13.6 1.7 33 7-40 12-44 (47)
3 >1tm9_A GI3844938, hypothetica 8.5 1.3E+02 0.0038 13.5 0.9 12 22-33 95-106 (137)
4 >3f3f_C Nucleoporin NUP85; str 8.3 1.7E+02 0.0051 12.9 1.5 22 3-24 38-59 (76)
5 >3lsg_A Two-component response 6.8 1.8E+02 0.0053 12.8 1.0 15 7-21 5-19 (45)
6 >1p94_A Plasmid partition prot 6.1 2.3E+02 0.0067 12.3 1.7 15 7-21 61-75 (76)
7 >2jfn_A Glutamate racemase; ce 5.8 44 0.0013 15.7 -2.6 20 9-28 17-36 (156)
8 >2ooa_A E3 ubiquitin-protein l 5.7 2.4E+02 0.0071 12.1 1.1 18 6-23 12-29 (52)
9 >2hwg_A Phosphoenolpyruvate-pr 5.5 2.5E+02 0.0073 12.1 2.2 22 7-28 85-106 (121)
10 >2d9s_A CBL E3 ubiquitin prote 5.1 2.6E+02 0.0077 12.0 1.2 8 3-10 37-44 (53)
No 1
>>2kke_A Uncharacterized protein; protein northeast structural genomics consortium (NESG), target TR5, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} (A:)
Probab=16.55 E-value=49 Score=15.50 Aligned_cols=12 Identities=50% Similarity=0.866 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999764443
Q 537021.9.peg.2 5 VAKDILNHMEDN 16 (44)
Q Consensus 5 vakdilnhmedn 16 (44)
...-||||.||.
T Consensus 42 irriilnhlede 53 (53)
T 2kke_A 42 IRRIILNHLEDE 53 (53)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHCCC
T ss_conf 999998651369
No 2
>>2ilk_A Interleukin-10; cytokine; 1.60A {Homo sapiens} (A:114-160)
Probab=11.94 E-value=1.2e+02 Score=13.60 Aligned_cols=33 Identities=24% Similarity=0.510 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999764443455658999999888952778875
Q 537021.9.peg.2 7 KDILNHMEDNYLKESYIYFFDIFLIYHDEYFLHE 40 (44)
Q Consensus 7 kdilnhmednylkesyiyffdifliyhdeyflhe 40 (44)
|...+.|++.-+-. -.-=||||.-|-..|+.-.
T Consensus 12 k~~~~klqekGvYK-AMgEfDifinYIE~Yl~~K 44 (47)
T 2ilk_A 12 KNAFNKLQEKGIYK-AMSEFDIFINYIEAYMTMK 44 (47)
T ss_dssp HHHHHHTTHHHHHH-HHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_conf 99999873536789-9988999999999999987
No 3
>>1tm9_A GI3844938, hypothetical protein Mg354; all alpha helical protein, structural genomics, PSI, protein structure initiative; NMR {Mycoplasma genitalium} (A:)
Probab=8.46 E-value=1.3e+02 Score=13.46 Aligned_cols=12 Identities=42% Similarity=0.891 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999988895
Q 537021.9.peg.2 22 YIYFFDIFLIYH 33 (44)
Q Consensus 22 yiyffdifliyh 33 (44)
-|-|--++..||
T Consensus 95 aiifcv~yflyh 106 (137)
T 1tm9_A 95 AIIFCVIYFLYH 106 (137)
T ss_dssp HHHHHHHHHHHH
T ss_pred EEHHHHHHHHHH
T ss_conf 103559999998
No 4
>>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleoporin complex, nuclear pore complex, macromolecular assembly; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B (C:495-570)
Probab=8.32 E-value=1.7e+02 Score=12.86 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4689999976444345565899
Q 537021.9.peg.2 3 YDVAKDILNHMEDNYLKESYIY 24 (44)
Q Consensus 3 ydvakdilnhmednylkesyiy 24 (44)
-++|+.|.-....+-|++.|+|
T Consensus 38 ~~~A~~iy~~~G~k~l~~g~~~ 59 (76)
T 3f3f_C 38 PEIAKEIYTTLGNQMLSAHNII 59 (76)
T ss_dssp HHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHCCCHH
T ss_conf 4899999999999999778799
No 5
>>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum} (A:1-45)
Probab=6.83 E-value=1.8e+02 Score=12.76 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999976444345565
Q 537021.9.peg.2 7 KDILNHMEDNYLKES 21 (44)
Q Consensus 7 kdilnhmednylkes 21 (44)
.-|++-||++|-.-+
T Consensus 5 ~~i~~~~ee~ysd~~ 19 (45)
T 3lsg_A 5 ELIQNIIEESYTDSQ 19 (45)
T ss_dssp HHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHCCCCC
T ss_conf 999999997668999
No 6
>>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} (A:)
Probab=6.09 E-value=2.3e+02 Score=12.28 Aligned_cols=15 Identities=47% Similarity=0.886 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999976444345565
Q 537021.9.peg.2 7 KDILNHMEDNYLKES 21 (44)
Q Consensus 7 kdilnhmednylkes 21 (44)
.|++|..-|++|+|.
T Consensus 61 tdVi~~Lvd~WL~en 75 (76)
T 1p94_A 61 TDVVNQLVDNWLKEN 75 (76)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999988626
No 7
>>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli} (A:1-97,A:209-267)
Probab=5.83 E-value=44 Score=15.74 Aligned_cols=20 Identities=25% Similarity=0.457 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99764443455658999999
Q 537021.9.peg.2 9 ILNHMEDNYLKESYIYFFDI 28 (44)
Q Consensus 9 ilnhmednylkesyiyffdi 28 (44)
+++++....-.++|||++|-
T Consensus 17 Vl~ei~~~lP~~~~iY~~D~ 36 (156)
T 2jfn_A 17 VYDEIRHLLPDLHYIYAFDN 36 (156)
T ss_dssp ---CEEEEEEEESSSTHHHH
T ss_pred CCCCCCEEEEEECCCCHHHH
T ss_conf 78999948998489468999
No 8
>>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A (A:)
Probab=5.65 E-value=2.4e+02 Score=12.15 Aligned_cols=18 Identities=17% Similarity=0.145 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999997644434556589
Q 537021.9.peg.2 6 AKDILNHMEDNYLKESYI 23 (44)
Q Consensus 6 akdilnhmednylkesyi 23 (44)
.-+|-+-|...|-++.-+
T Consensus 12 ~~eI~~Lm~~GYs~~dv~ 29 (52)
T 2ooa_A 12 DAKIAKLXGEGYAFEEVK 29 (52)
T ss_dssp HHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHCCCCHHHHH
T ss_conf 289999998554399999
No 9
>>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} (A:28-148)
Probab=5.51 E-value=2.5e+02 Score=12.10 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999764443455658999999
Q 537021.9.peg.2 7 KDILNHMEDNYLKESYIYFFDI 28 (44)
Q Consensus 7 kdilnhmednylkesyiyffdi 28 (44)
.+.++.|+|.|++|--.=..|+
T Consensus 85 ~~~f~~~~d~YlreRa~Di~Dv 106 (121)
T 2hwg_A 85 ASALEELDDEYLKERAADVRDI 106 (121)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHH
T ss_conf 9999854509999878778889
No 10
>>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=5.11 E-value=2.6e+02 Score=11.96 Aligned_cols=8 Identities=50% Similarity=0.808 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q ss_conf 46899999
Q 537021.9.peg.2 3 YDVAKDIL 10 (44)
Q Consensus 3 ydvakdil 10 (44)
.++|++||
T Consensus 37 iemA~~IL 44 (53)
T 2d9s_A 37 IEMAKNIL 44 (53)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
Done!