Query 537021.9.peg.21_1 Match_columns 44 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Sun May 22 17:42:00 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_21.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2kke_A Uncharacterized protein 16.5 35 0.0015 15.5 0.8 12 5-16 42-53 (53) 2 1p94_A Plasmid partition prote 10.4 98 0.0041 13.3 1.7 15 7-21 61-75 (76) 3 3nzt_A Glutamate--cysteine lig 8.8 82 0.0034 13.7 0.7 16 18-33 347-362 (525) 4 1tm9_A GI3844938, hypothetical 8.5 91 0.0038 13.5 0.9 12 22-33 95-106 (137) 5 1va6_A Glutamate--cysteine lig 8.5 85 0.0036 13.6 0.7 17 17-33 341-357 (518) 6 2bju_A Plasmepsin II; aspartic 6.5 87 0.0036 13.6 0.0 21 5-25 93-113 (453) 7 1fqi_A RGS9, regulator of G-pr 4.5 2.1E+02 0.0087 11.7 2.3 17 1-17 109-125 (147) 8 2ooa_A E3 ubiquitin-protein li 4.4 2.1E+02 0.0088 11.7 1.1 18 7-24 13-30 (52) 9 2oo9_A E3 ubiquitin-protein li 3.8 2.4E+02 0.01 11.4 1.1 17 7-23 6-22 (46) 10 2d9s_A CBL E3 ubiquitin protei 2.9 2.9E+02 0.012 11.0 1.1 7 4-10 38-44 (53) No 1 >2kke_A Uncharacterized protein; protein northeast structural genomics consortium (NESG), target TR5, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} Probab=16.55 E-value=35 Score=15.50 Aligned_cols=12 Identities=50% Similarity=0.866 Sum_probs=7.7 Q ss_pred HHHHHHHHHHHH Q ss_conf 899999764443 Q 537021.9.peg.2 5 VAKDILNHMEDN 16 (44) Q Consensus 5 vakdilnhmedn 16 (44) ...-||||.||. T Consensus 42 irriilnhlede 53 (53) T 2kke_A 42 IRRIILNHLEDE 53 (53) T ss_dssp HHHHHHHHHHTC T ss_pred HHHHHHHHHCCC T ss_conf 999998651369 No 2 >1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3 Probab=10.42 E-value=98 Score=13.30 Aligned_cols=15 Identities=47% Similarity=0.886 Sum_probs=12.2 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999976444345565 Q 537021.9.peg.2 7 KDILNHMEDNYLKES 21 (44) Q Consensus 7 kdilnhmednylkes 21 (44) +|.+|..-||+|+|. T Consensus 61 tdVi~~Lvd~WL~eN 75 (76) T 1p94_A 61 TDVVNQLVDNWLKEN 75 (76) T ss_dssp HHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHCC T ss_conf 999999999988626 No 3 >3nzt_A Glutamate--cysteine ligase; structural genomics, center for structural genomics of infec diseases, csgid, alpha and beta proteins; HET: AMP; 2.00A {Francisella tularensis subsp} Probab=8.75 E-value=82 Score=13.69 Aligned_cols=16 Identities=13% Similarity=0.411 Sum_probs=9.9 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 5565899999988895 Q 537021.9.peg.2 18 LKESYIYFFDIFLIYH 33 (44) Q Consensus 18 lkesyiyffdifliyh 33 (44) ..+.-|+|.|+||+|. T Consensus 347 Is~~~i~FLdlfLlyc 362 (525) T 3nzt_A 347 ISKDTALFVEVMLMTC 362 (525) T ss_dssp CCHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHH T ss_conf 8989999999999999 No 4 >1tm9_A GI3844938, hypothetical protein Mg354; all alpha helical protein, structural genomics, PSI, protein structure initiative; NMR {Mycoplasma genitalium} SCOP: a.225.1.1 Probab=8.46 E-value=91 Score=13.46 Aligned_cols=12 Identities=42% Similarity=0.891 Sum_probs=4.8 Q ss_pred HHHHHHHHHHHH Q ss_conf 899999988895 Q 537021.9.peg.2 22 YIYFFDIFLIYH 33 (44) Q Consensus 22 yiyffdifliyh 33 (44) -|-|--++..|| T Consensus 95 aiifci~yflyh 106 (137) T 1tm9_A 95 AIIFCVIYFLYH 106 (137) T ss_dssp HHHHHHHHHHHH T ss_pred EEHHHHHHHHHH T ss_conf 103559999998 No 5 >1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel, peptide synthesis, transition state analogue; HET: P2S ADP P6G; 2.10A {Escherichia coli} SCOP: d.128.1.4 PDB: 1v4g_A* 2d32_A* 2d33_A* Probab=8.45 E-value=85 Score=13.59 Aligned_cols=17 Identities=24% Similarity=0.665 Sum_probs=10.8 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 45565899999988895 Q 537021.9.peg.2 17 YLKESYIYFFDIFLIYH 33 (44) Q Consensus 17 ylkesyiyffdifliyh 33 (44) -..++-|+|.|+||+|. T Consensus 341 GIs~~~i~FL~lfllyc 357 (518) T 1va6_A 341 GVDEQQVRFLDLFMVWC 357 (518) T ss_dssp SCCHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHH T ss_conf 87889989999999999 No 6 >2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 2anl_A* 1qs8_A* Probab=6.54 E-value=87 Score=13.56 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=16.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 899999764443455658999 Q 537021.9.peg.2 5 VAKDILNHMEDNYLKESYIYF 25 (44) Q Consensus 5 vakdilnhmednylkesyiyf 25 (44) +-|.|++|--.||+||+|-.| T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~ 113 (453) T 2bju_A 93 ILKTIKTHKLKNYIKESVNFL 113 (453) T ss_dssp --------------------- T ss_pred HHHHHHHHHHHHHHHHHHHHH T ss_conf 355665410777765345552 No 7 >1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD, GAP, signaling protein; 1.94A {Bos taurus} SCOP: a.91.1.1 PDB: 1fqj_B* 1fqk_B* Probab=4.46 E-value=2.1e+02 Score=11.72 Aligned_cols=17 Identities=12% Similarity=0.141 Sum_probs=11.9 Q ss_pred CHHHHHHHHHHHHHHHH Q ss_conf 94468999997644434 Q 537021.9.peg.2 1 MFYDVAKDILNHMEDNY 17 (44) Q Consensus 1 mfydvakdilnhmedny 17 (44) +|..+.+.|+++|+.++ T Consensus 109 ~F~~a~~~V~~~L~~d~ 125 (147) T 1fqi_A 109 VLDAAQTHIYMLMKKDS 125 (147) T ss_dssp TTHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHCH T ss_conf 99999999999986581 No 8 >2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A Probab=4.40 E-value=2.1e+02 Score=11.69 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=9.1 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999976444345565899 Q 537021.9.peg.2 7 KDILNHMEDNYLKESYIY 24 (44) Q Consensus 7 kdilnhmednylkesyiy 24 (44) -+|-.-|...|-++.-+- T Consensus 13 ~eI~~Lm~~GYs~~dv~r 30 (52) T 2ooa_A 13 AKIAKLMGEGYAFEEVKR 30 (52) T ss_dssp HHHHHHHHTTCCHHHHHH T ss_pred HHHHHHHHCCCCHHHHHH T ss_conf 799999986655999999 No 9 >2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens} Probab=3.76 E-value=2.4e+02 Score=11.42 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=7.4 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99997644434556589 Q 537021.9.peg.2 7 KDILNHMEDNYLKESYI 23 (44) Q Consensus 7 kdilnhmednylkesyi 23 (44) ..|-.-|...|-++.-+ T Consensus 6 ~eI~~Lm~~GYs~~~v~ 22 (46) T 2oo9_A 6 SEIENLMSQGYSYQDIQ 22 (46) T ss_dssp HHHHHHHHTTBCHHHHH T ss_pred HHHHHHHHCCCCHHHHH T ss_conf 89999998677699999 No 10 >2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus} Probab=2.94 E-value=2.9e+02 Score=10.99 Aligned_cols=7 Identities=57% Similarity=0.956 Sum_probs=0.0 Q ss_pred HHHHHHH Q ss_conf 6899999 Q 537021.9.peg.2 4 DVAKDIL 10 (44) Q Consensus 4 dvakdil 10 (44) ++|++|| T Consensus 38 emA~~IL 44 (53) T 2d9s_A 38 EMAKNIL 44 (53) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999999 Done!