RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.21_1
         (44 letters)



>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional.
          Length = 257

 Score = 25.8 bits (57), Expect = 2.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 6   AKDILNHMEDNYLKESYIY 24
           AKD LN +E+  L++ Y Y
Sbjct: 207 AKDALNTIENMSLRDGYRY 225


>gnl|CDD|179146 PRK00865, PRK00865, glutamate racemase; Provisional.
          Length = 261

 Score = 24.7 bits (55), Expect = 5.0
 Identities = 6/23 (26%), Positives = 9/23 (39%), Gaps = 4/23 (17%)

Query: 5  VAKDILNHMEDNYLKESYIYFFD 27
          V ++I   +      E  IY  D
Sbjct: 20 VLREIRRLL----PDEHIIYVGD 38


>gnl|CDD|183827 PRK12906, secA, preprotein translocase subunit SecA; Reviewed.
          Length = 796

 Score = 24.3 bits (53), Expect = 8.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)

Query: 3   YDVAKDILNHMEDNYLKESYIYFFDI 28
           YD     L H  D  L+ +YI   DI
Sbjct: 290 YDSENTALAHHIDQALRANYIMLKDI 315


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.336    0.155    0.487 

Gapped
Lambda     K      H
   0.267   0.0684    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 767,326
Number of extensions: 31311
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 6
Length of query: 44
Length of database: 5,994,473
Length adjustment: 17
Effective length of query: 27
Effective length of database: 5,627,137
Effective search space: 151932699
Effective search space used: 151932699
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.1 bits)