BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.21_1
         (44 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.21_1 
          Length = 44

 Score = 85.1 bits (209), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/44 (100%), Positives = 44/44 (100%)

Query: 1  MFYDVAKDILNHMEDNYLKESYIYFFDIFLIYHDEYFLHEIFLY 44
          MFYDVAKDILNHMEDNYLKESYIYFFDIFLIYHDEYFLHEIFLY
Sbjct: 1  MFYDVAKDILNHMEDNYLKESYIYFFDIFLIYHDEYFLHEIFLY 44


>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 539

 Score = 22.3 bits (46), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 10/38 (26%)

Query: 11  NHME-------DNYLKESYIYFFDIFLIYHDEYFLHEI 41
           NH++       + YL+E   Y   + ++ HD YFL  +
Sbjct: 185 NHLDAETIAWMEKYLRE---YSGAVLMVTHDRYFLDNV 219


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.336    0.155    0.487 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,350
Number of Sequences: 1233
Number of extensions: 978
Number of successful extensions: 2
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 44
length of database: 328,796
effective HSP length: 17
effective length of query: 27
effective length of database: 307,835
effective search space:  8311545
effective search space used:  8311545
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 31 (16.5 bits)