Query 537021.9.peg.218_1 Match_columns 39 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 16:08:44 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_218.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2p38_A Protein involved in ri 12.2 37 0.0011 16.6 -0.8 29 8-36 11-41 (72) 2 >2jc9_A Cytosolic purine 5'-nu 12.2 57 0.0017 15.7 0.1 11 10-20 45-55 (72) 3 >3cvz_A S-layer protein; surfa 10.5 1E+02 0.003 14.4 1.0 16 8-23 79-94 (143) 4 >2jza_A Nitrite reductase [NAD 9.3 1.6E+02 0.0048 13.4 1.7 22 15-37 48-69 (90) 5 >1olz_A Semaphorin 4D; develop 6.4 2.3E+02 0.0068 12.7 1.4 38 2-39 8-45 (135) 6 >1ez0_A ALDH, aldehyde dehydro 6.2 2E+02 0.006 13.0 1.0 17 11-27 249-268 (312) 7 >2c7h_A RBBP6, retinoblastoma- 6.2 2.1E+02 0.0061 12.9 1.0 14 18-31 67-80 (86) 8 >2h2z_A PP1AB, ORF1AB, replica 5.9 1.1E+02 0.0034 14.2 -0.4 15 6-20 135-149 (189) 9 >2zu2_A 3C-like proteinase; pr 5.8 1.2E+02 0.0035 14.1 -0.4 15 6-20 134-148 (190) 10 >1lvo_A Replicase, hydrolase d 5.7 1.2E+02 0.0035 14.1 -0.4 13 6-18 134-146 (190) No 1 >>2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi} (A:95-166) Probab=12.18 E-value=37 Score=16.61 Aligned_cols=29 Identities=17% Similarity=0.032 Sum_probs=15.8 Q ss_pred ECCEEEECC--CCCCCCCCEEEEEEEEEEEE Q ss_conf 310353113--54211210012236899997 Q 537021.9.peg.2 8 EDSFLYGKM--GSTAARSTSVINRRYVQISM 36 (39) Q Consensus 8 edsflygkm--gstaarstsvinrryvqism 36 (39) |-+||||+- .+.-.|-+.-.+...|-.|| T Consensus 11 e~~FLYG~dV~k~~i~rite~~~~gVvV~n~ 41 (72) T 2p38_A 11 SFLFTTGKDAPKEAVREIKWQGSKRVVVLND 41 (72) T ss_dssp HHHHHTTCCBCGGGEEEEECSSCSEEEEECT T ss_pred EEEEEECCCCHHHHHEEECCCCCCEEEEEEC T ss_conf 4777416752054404753578870999957 No 2 >>2jc9_A Cytosolic purine 5'-nucleotidase; cytosolic 5-prime nucleotidase II, GMP-IMP specific nucleotidase, CN-II, NT5C2, hydrolase, polymorphism; HET: ADN; 1.5A {Homo sapiens} PDB: 2j2c_A* 2jcm_A* (A:406-477) Probab=12.16 E-value=57 Score=15.69 Aligned_cols=11 Identities=45% Similarity=0.700 Sum_probs=7.8 Q ss_pred CEEEECCCCCC Q ss_conf 03531135421 Q 537021.9.peg.2 10 SFLYGKMGSTA 20 (39) Q Consensus 10 sflygkmgsta 20 (39) ..-||+|||.- T Consensus 45 d~~yg~~GSlF 55 (72) T 2jc9_A 45 DMCYGMMGSLF 55 (72) T ss_dssp HHTTCTTCCSS T ss_pred HHHHHHHHHHC T ss_conf 87774422333 No 3 >>3cvz_A S-layer protein; surface layer protein, protein binding, structural protein; 2.40A {Clostridium difficile} (A:94-236) Probab=10.51 E-value=1e+02 Score=14.44 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=12.3 Q ss_pred ECCEEEECCCCCCCCC Q ss_conf 3103531135421121 Q 537021.9.peg.2 8 EDSFLYGKMGSTAARS 23 (39) Q Consensus 8 edsflygkmgstaars 23 (39) .++|.||..|+..|-. T Consensus 79 ~~~~~YGt~gd~tAg~ 94 (143) T 3cvz_A 79 AVEDKYGKVGDSTAGI 94 (143) T ss_dssp CCCCEEECTTCSSCCE T ss_pred CCCCCEECCCCCCEEE T ss_conf 3433300004653046 No 4 >>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} (A:1-50,A:91-130) Probab=9.29 E-value=1.6e+02 Score=13.40 Aligned_cols=22 Identities=45% Similarity=0.335 Sum_probs=17.8 Q ss_pred CCCCCCCCCCEEEEEEEEEEEEE Q ss_conf 13542112100122368999974 Q 537021.9.peg.2 15 KMGSTAARSTSVINRRYVQISMK 37 (39) Q Consensus 15 kmgstaarstsvinrryvqismk 37 (39) -+||.||-.|.|.|. -||||.. T Consensus 48 H~g~~~~~~~~~~~~-~~~~~~~ 69 (90) T 2jza_A 48 FAQSVAAYDTQVTNG-NVQISIA 69 (90) T ss_dssp TTSCCBCCCEEESSS-EEEEECC T ss_pred CCCCCCCCCEEEECC-EEEEEEC T ss_conf 767777401799899-9999858 No 5 >>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} (A:135-259,A:310-319) Probab=6.41 E-value=2.3e+02 Score=12.67 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=21.6 Q ss_pred EEEEEEECCEEEECCCCCCCCCCEEEEEEEEEEEEECC Q ss_conf 39999731035311354211210012236899997429 Q 537021.9.peg.2 2 TFTMTIEDSFLYGKMGSTAARSTSVINRRYVQISMKTE 39 (39) Q Consensus 2 tftmtiedsflygkmgstaarstsvinrryvqismkte 39 (39) .++..+-|.-||.-.-+.-..+..+|-|.-.+-+++|| T Consensus 8 ~~tal~~dG~LYsgt~~df~g~d~~I~Rs~g~~~lrTe 45 (135) T 1olz_A 8 SYTSVMVDGELYSGTSYNFLGSEPIISRNSSHSPLRTE 45 (135) T ss_dssp CEEEEEETTEEEEEEESSTTSCSEEEEEECSSCCBCCC T ss_pred CEEEEEECCEEEEEEECCCCCCCCCEEECCCCCCCCHH T ss_conf 97899989989999855668998617832788875301 No 6 >>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+, oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} (A:1-256,A:455-510) Probab=6.24 E-value=2e+02 Score=12.96 Aligned_cols=17 Identities=47% Similarity=0.634 Sum_probs=11.9 Q ss_pred EEEECCCC---CCCCCCEEE Q ss_conf 35311354---211210012 Q 537021.9.peg.2 11 FLYGKMGS---TAARSTSVI 27 (39) Q Consensus 11 flygkmgs---taarstsvi 27 (39) -+|+.||+ |..|+|||= T Consensus 249 p~~~ElGGp~~~~~~~t~vg 268 (312) T 1ez0_A 249 PFYGELGAPASTHSASTSVG 268 (312) T ss_dssp CEEEECCCTSCSCSSCCSSS T ss_pred EEECCCCCCCCCCCCCCCCH T ss_conf 24313688881799876654 No 7 >>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens} (A:) Probab=6.18 E-value=2.1e+02 Score=12.90 Aligned_cols=14 Identities=36% Similarity=0.489 Sum_probs=10.4 Q ss_pred CCCCCCCEEEEEEE Q ss_conf 42112100122368 Q 537021.9.peg.2 18 STAARSTSVINRRY 31 (39) Q Consensus 18 staarstsvinrry 31 (39) .--.|++|||-||- T Consensus 67 ~lIpknssViVrRv 80 (86) T 2c7h_A 67 ALIPKNSSVIVRRI 80 (86) T ss_dssp CEEETTCCEEEEEE T ss_pred EEEECCCEEEEEEC T ss_conf 38817878999962 No 8 >>2h2z_A PP1AB, ORF1AB, replicase polyprotein 1AB; main protease, authentic N and C termini, viral protein; 1.60A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ... (A:1-189) Probab=5.92 E-value=1.1e+02 Score=14.17 Aligned_cols=15 Identities=53% Similarity=0.771 Sum_probs=12.0 Q ss_pred EEECCEEEECCCCCC Q ss_conf 973103531135421 Q 537021.9.peg.2 6 TIEDSFLYGKMGSTA 20 (39) Q Consensus 6 tiedsflygkmgsta 20 (39) ||..|||-|.-||.. T Consensus 135 TIkgSFl~GaCGSvG 149 (189) T 2h2z_A 135 TIKGSFLNGSCGSVG 149 (189) T ss_dssp CBCCCCCTTCTTCEE T ss_pred CEEEEEECCCCCCCC T ss_conf 078888746578883 No 9 >>2zu2_A 3C-like proteinase; protease-inhibitor complex, cytoplasm, hydrolase, membrane, metal-binding, protease, ribosomal frameshifting; 1.80A {Human coronavirus 229E} PDB: 1p9s_A (A:1-190) Probab=5.75 E-value=1.2e+02 Score=14.09 Aligned_cols=15 Identities=47% Similarity=0.718 Sum_probs=12.0 Q ss_pred EEECCEEEECCCCCC Q ss_conf 973103531135421 Q 537021.9.peg.2 6 TIEDSFLYGKMGSTA 20 (39) Q Consensus 6 tiedsflygkmgsta 20 (39) ||..|||-|.-||.. T Consensus 134 TIkgSFl~GaCGSvG 148 (190) T 2zu2_A 134 TIRGSFINGACGSPG 148 (190) T ss_dssp CBCCCCCTTCTTCEE T ss_pred CEEEEEECCCCCCCC T ss_conf 088888736578983 No 10 >>1lvo_A Replicase, hydrolase domain; 3C like, corona, proteinase, chymotrypsin, cysteine histidine DYAD, beta barrel; 1.96A {Transmissible gastroenteritis virus} (A:1-190) Probab=5.73 E-value=1.2e+02 Score=14.08 Aligned_cols=13 Identities=54% Similarity=0.825 Sum_probs=0.0 Q ss_pred EEECCEEEECCCC Q ss_conf 9731035311354 Q 537021.9.peg.2 6 TIEDSFLYGKMGS 18 (39) Q Consensus 6 tiedsflygkmgs 18 (39) ||..|||-|.-|| T Consensus 134 TIkgSFl~GaCGS 146 (190) T 1lvo_A 134 TIKGSFIAGTCGS 146 (190) T ss_dssp CBCCCCCTTCTTC T ss_pred CEEEEEECCCCCC T ss_conf 1788887465789 Done!