Query 537021.9.peg.218_1
Match_columns 39
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed May 25 16:01:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_218.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c7h_A RBBP6, retinoblastoma-b 7.1 1.2E+02 0.0051 13.3 1.0 15 17-31 66-80 (86)
2 2zu2_A 3C-like proteinase; pro 4.4 1.2E+02 0.0049 13.4 -0.4 15 6-20 134-148 (302)
3 2h2z_A PP1AB, ORF1AB, replicas 4.3 1.2E+02 0.0051 13.3 -0.4 15 6-20 135-149 (306)
4 1lvo_A Replicase, hydrolase do 4.2 1.2E+02 0.0052 13.2 -0.4 16 6-21 134-149 (302)
5 3d23_B 3C-like proteinase; mai 4.1 1.3E+02 0.0053 13.2 -0.4 15 6-20 137-151 (302)
6 2q6f_A Fragment, infectious br 3.9 1.3E+02 0.0056 13.1 -0.4 15 6-20 135-149 (309)
7 3m95_A Autophagy related prote 3.0 2.5E+02 0.01 11.8 0.2 6 8-13 109-114 (125)
8 2p38_A Protein involved in rib 3.0 1.2E+02 0.0051 13.3 -1.4 8 8-15 105-112 (166)
9 3lz8_A Putative chaperone DNAJ 2.9 2.4E+02 0.01 11.8 0.0 34 2-37 22-55 (329)
10 2zjd_A Microtubule-associated 2.9 2.6E+02 0.011 11.6 0.2 6 8-13 110-115 (130)
No 1
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=7.15 E-value=1.2e+02 Score=13.30 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=11.0
Q ss_pred CCCCCCCCEEEEEEE
Q ss_conf 542112100122368
Q 537021.9.peg.2 17 GSTAARSTSVINRRY 31 (39)
Q Consensus 17 gstaarstsvinrry 31 (39)
..--.|++|||-||-
T Consensus 66 ~~lIprnssViVrRv 80 (86)
T 2c7h_A 66 NALIPKNSSVIVRRI 80 (86)
T ss_dssp TCEEETTCCEEEEEE
T ss_pred CEEECCCCEEEEEEE
T ss_conf 648618778999960
No 2
>2zu2_A 3C-like proteinase; protease-inhibitor complex, cytoplasm, hydrolase, membrane, metal-binding, protease, ribosomal frameshifting; 1.80A {Human coronavirus 229E} PDB: 1p9s_A
Probab=4.44 E-value=1.2e+02 Score=13.39 Aligned_cols=15 Identities=47% Similarity=0.718 Sum_probs=12.0
Q ss_pred EEECCEEEECCCCCC
Q ss_conf 973103531135421
Q 537021.9.peg.2 6 TIEDSFLYGKMGSTA 20 (39)
Q Consensus 6 tiedsflygkmgsta 20 (39)
||..|||-|.-||..
T Consensus 134 TIrgSFl~GaCGSvG 148 (302)
T 2zu2_A 134 TIRGSFINGACGSPG 148 (302)
T ss_dssp CBCCCCCTTCTTCEE
T ss_pred CEEEEEECCCCCCCC
T ss_conf 178888746578983
No 3
>2h2z_A PP1AB, ORF1AB, replicase polyprotein 1AB; main protease, authentic N and C termini, viral protein; 1.60A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ...
Probab=4.29 E-value=1.2e+02 Score=13.30 Aligned_cols=15 Identities=53% Similarity=0.771 Sum_probs=11.8
Q ss_pred EEECCEEEECCCCCC
Q ss_conf 973103531135421
Q 537021.9.peg.2 6 TIEDSFLYGKMGSTA 20 (39)
Q Consensus 6 tiedsflygkmgsta 20 (39)
||..|||-|.-||..
T Consensus 135 TIrgSFl~GaCGSvG 149 (306)
T 2h2z_A 135 TIKGSFLNGSCGSVG 149 (306)
T ss_dssp CBCCCCCTTCTTCEE
T ss_pred CEEEEEECCCCCCCC
T ss_conf 078888746578983
No 4
>1lvo_A Replicase, hydrolase domain; 3C like, corona, proteinase, chymotrypsin, cysteine histidine DYAD, beta barrel; 1.96A {Transmissible gastroenteritis virus} SCOP: b.47.1.4 PDB: 1p9u_A 2amp_A*
Probab=4.18 E-value=1.2e+02 Score=13.23 Aligned_cols=16 Identities=44% Similarity=0.636 Sum_probs=12.3
Q ss_pred EEECCEEEECCCCCCC
Q ss_conf 9731035311354211
Q 537021.9.peg.2 6 TIEDSFLYGKMGSTAA 21 (39)
Q Consensus 6 tiedsflygkmgstaa 21 (39)
||..|||-|.-||..-
T Consensus 134 TIrgSFl~GaCGSvGy 149 (302)
T 1lvo_A 134 TIKGSFIAGTCGSVGY 149 (302)
T ss_dssp CBCCCCCTTCTTCEEE
T ss_pred CEEEEEECCCCCCCCE
T ss_conf 0888887466789836
No 5
>3d23_B 3C-like proteinase; main protease, ATP-binding, cytoplasm, endonuclease, exonuclease, helicase, hydrolase, membrane, metal-binding; HET: 3IH; 2.50A {Human coronavirus HKU1}
Probab=4.13 E-value=1.3e+02 Score=13.20 Aligned_cols=15 Identities=53% Similarity=0.791 Sum_probs=11.7
Q ss_pred EEECCEEEECCCCCC
Q ss_conf 973103531135421
Q 537021.9.peg.2 6 TIEDSFLYGKMGSTA 20 (39)
Q Consensus 6 tiedsflygkmgsta 20 (39)
||..|||-|.-||..
T Consensus 137 TIkgSFl~GaCGSvG 151 (302)
T 3d23_B 137 TIKGSFLCGSCGSVG 151 (302)
T ss_dssp CBCCCCCTTCTTCEE
T ss_pred EEEEEEECCCCCCCC
T ss_conf 078888746678983
No 6
>2q6f_A Fragment, infectious bronchitis virus (IBV) main protease; coronavirus, 3C-like proteinase, michael acceptor inhibitor, hydrolase; HET: 3IH; 2.00A {Infectious bronchitis virus} PDB: 2q6d_A*
Probab=3.95 E-value=1.3e+02 Score=13.08 Aligned_cols=15 Identities=53% Similarity=0.716 Sum_probs=11.7
Q ss_pred EEECCEEEECCCCCC
Q ss_conf 973103531135421
Q 537021.9.peg.2 6 TIEDSFLYGKMGSTA 20 (39)
Q Consensus 6 tiedsflygkmgsta 20 (39)
||..|||-|.-||..
T Consensus 135 TIkgSFl~GaCGSvG 149 (309)
T 2q6f_A 135 TIRASFLAGACGSVG 149 (309)
T ss_dssp CBCCCCCTTCTTCEE
T ss_pred EEEEEEECCCCCCCC
T ss_conf 078888746678882
No 7
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori}
Probab=3.02 E-value=2.5e+02 Score=11.76 Aligned_cols=6 Identities=83% Similarity=1.348 Sum_probs=0.0
Q ss_pred ECCEEE
Q ss_conf 310353
Q 537021.9.peg.2 8 EDSFLY 13 (39)
Q Consensus 8 edsfly 13 (39)
||.|||
T Consensus 109 eDGFLY 114 (125)
T 3m95_A 109 EDFFLY 114 (125)
T ss_dssp TTSCEE
T ss_pred CCCEEE
T ss_conf 886799
No 8
>2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi}
Probab=3.00 E-value=1.2e+02 Score=13.29 Aligned_cols=8 Identities=38% Similarity=0.301 Sum_probs=0.0
Q ss_pred ECCEEEEC
Q ss_conf 31035311
Q 537021.9.peg.2 8 EDSFLYGK 15 (39)
Q Consensus 8 edsflygk 15 (39)
|-+||||+
T Consensus 105 e~~FLYG~ 112 (166)
T 2p38_A 105 SFLFTTGK 112 (166)
T ss_dssp HHHHHTTC
T ss_pred EEEEEECC
T ss_conf 58775367
No 9
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein structure initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=2.90 E-value=2.4e+02 Score=11.83 Aligned_cols=34 Identities=21% Similarity=0.424 Sum_probs=0.0
Q ss_pred EEEEEEECCEEEECCCCCCCCCCEEEEEEEEEEEEE
Q ss_conf 399997310353113542112100122368999974
Q 537021.9.peg.2 2 TFTMTIEDSFLYGKMGSTAARSTSVINRRYVQISMK 37 (39)
Q Consensus 2 tftmtiedsflygkmgstaarstsvinrryvqismk 37 (39)
+.+|...| .|.-+|-...-|..-|.+-|-+.++|
T Consensus 22 ~~~m~~kD--yY~iLGV~~~AS~~EIKkAYRkLA~k 55 (329)
T 3lz8_A 22 SNAMELKD--YYAILGVQPTDDLKTIKTAYRRLARK 55 (329)
T ss_dssp ------------------------------------
T ss_pred CCCCCCCC--CHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 17666477--78980999997999999999999998
No 10
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=2.86 E-value=2.6e+02 Score=11.61 Aligned_cols=6 Identities=83% Similarity=1.525 Sum_probs=0.0
Q ss_pred ECCEEE
Q ss_conf 310353
Q 537021.9.peg.2 8 EDSFLY 13 (39)
Q Consensus 8 edsfly 13 (39)
||.|||
T Consensus 110 eDGfLY 115 (130)
T 2zjd_A 110 EDGFLY 115 (130)
T ss_dssp TTSCEE
T ss_pred CCCEEE
T ss_conf 998699
Done!