Query 537021.9.peg.224_1
Match_columns 38
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed May 25 16:09:45 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_224.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fnoa1 a.45.1.1 (A:88-236) Hy 10.7 41 0.003 15.3 1.0 35 2-36 68-102 (149)
2 d2d6fc3 d.128.1.5 (C:1-270,C:3 5.9 75 0.0055 14.1 0.6 20 10-29 241-260 (319)
3 d1u69a_ d.32.1.7 (A:) Hypothet 5.0 1.1E+02 0.0082 13.3 1.1 17 3-19 140-156 (156)
4 d1zq1c3 d.128.1.5 (C:5-276,C:4 4.7 1E+02 0.0074 13.4 0.7 20 10-29 243-262 (321)
5 d2f2ab2 d.128.1.5 (B:4-293) As 3.8 1E+02 0.0073 13.5 0.0 23 10-32 213-235 (290)
6 d1f45b_ a.26.1.1 (B:) Heterodi 3.6 1.6E+02 0.012 12.5 1.0 13 19-31 37-49 (178)
7 d1whza_ d.50.3.2 (A:) Hypothet 3.0 2E+02 0.015 12.1 1.2 17 1-17 1-17 (70)
8 d1uptb_ a.193.1.1 (B:) Golgi a 2.5 2.4E+02 0.018 11.7 0.9 14 2-18 15-28 (58)
9 d1v54m_ f.23.7.1 (M:) Mitochon 2.2 2.7E+02 0.02 11.5 0.9 26 11-36 10-35 (43)
10 d1dp7p_ a.4.5.20 (P:) Class II 2.1 70 0.0051 14.2 -2.4 24 7-30 31-54 (76)
No 1
>d2fnoa1 a.45.1.1 (A:88-236) Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=10.72 E-value=41 Score=15.26 Aligned_cols=35 Identities=34% Similarity=0.668 Sum_probs=29.7
Q ss_pred CCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 42241010489999642134444322000010003
Q 537021.9.peg.2 2 YMMNKEKIGIKTLEKAIKYETIRACFPLATGYLES 36 (38)
Q Consensus 2 ymmnkekigiktlekaikyetiracfplatgyles 36 (38)
+|...+++||-.+-.++-+-|.-.|||--.+-|+.
T Consensus 68 f~lGt~ap~~aDivt~~Lw~tMtdr~P~l~~~L~~ 102 (149)
T d2fnoa1 68 FMLGTEKIGVADIVTAILWTTVADRFPAIKGIIED 102 (149)
T ss_dssp CTTSCSSCCHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 01047886389999999999999875330456650
No 2
>d2d6fc3 d.128.1.5 (C:1-270,C:396-444) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=5.86 E-value=75 Score=14.06 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q ss_conf 48999964213444432200
Q 537021.9.peg.2 10 GIKTLEKAIKYETIRACFPL 29 (38)
Q Consensus 10 giktlekaikyetiracfpl 29 (38)
.++.+++||.||..|----+
T Consensus 241 Sfr~i~~AI~yEi~RQ~~ll 260 (319)
T d2d6fc3 241 DLDLIPEIVEREVKRQLSLV 260 (319)
T ss_dssp CGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 05788888889999999999
No 3
>d1u69a_ d.32.1.7 (A:) Hypothetical protein PA2721 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.03 E-value=1.1e+02 Score=13.25 Aligned_cols=17 Identities=53% Similarity=0.706 Sum_probs=12.1
Q ss_pred CCCHHHCCHHHHHHHHH
Q ss_conf 22410104899996421
Q 537021.9.peg.2 3 MMNKEKIGIKTLEKAIK 19 (38)
Q Consensus 3 mmnkekigiktlekaik 19 (38)
||...||-|-.|++|-+
T Consensus 140 ~~~m~k~d~~~l~~a~~ 156 (156)
T d1u69a_ 140 MMTMGRIDIATIEKAFK 156 (156)
T ss_dssp HTTCSSCCHHHHHHHHC
T ss_pred HHCCCCEEHHHHHHHHC
T ss_conf 87676740999999749
No 4
>d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Pyrococcus abyssi [TaxId: 29292]}
Probab=4.72 E-value=1e+02 Score=13.45 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q ss_conf 48999964213444432200
Q 537021.9.peg.2 10 GIKTLEKAIKYETIRACFPL 29 (38)
Q Consensus 10 giktlekaikyetiracfpl 29 (38)
.++.+++||.||..|.---+
T Consensus 243 S~r~i~~AI~~Ei~RQ~~~l 262 (321)
T d1zq1c3 243 ELDMIPIIIEREVERQLNLL 262 (321)
T ss_dssp SGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 15778888899999999999
No 5
>d2f2ab2 d.128.1.5 (B:4-293) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=3.76 E-value=1e+02 Score=13.47 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 48999964213444432200001
Q 537021.9.peg.2 10 GIKTLEKAIKYETIRACFPLATG 32 (38)
Q Consensus 10 giktlekaikyetiracfplatg 32 (38)
.++.+++||.||..|----+..|
T Consensus 213 S~~~i~~aI~~Ei~RQ~~~l~~g 235 (290)
T d2f2ab2 213 SFNYVRKGLEYEEKRQEEELLNG 235 (290)
T ss_dssp CSTTTHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 78899999999999999987539
No 6
>d1f45b_ a.26.1.1 (B:) Heterodimeric interleukin-12 alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.63 E-value=1.6e+02 Score=12.51 Aligned_cols=13 Identities=46% Similarity=0.864 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 1344443220000
Q 537021.9.peg.2 19 KYETIRACFPLAT 31 (38)
Q Consensus 19 kyetiracfplat 31 (38)
|-.|+.||+|+.-
T Consensus 37 kT~Tv~AC~P~el 49 (178)
T d1f45b_ 37 KTSTVEACLPLEL 49 (178)
T ss_dssp --CHHHHTCBGGG
T ss_pred CCHHHHHHCCHHH
T ss_conf 4105787487876
No 7
>d1whza_ d.50.3.2 (A:) Hypothetical protein TTHA1913 {Thermus thermophilus [TaxId: 274]}
Probab=3.05 E-value=2e+02 Score=12.05 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=11.3
Q ss_pred CCCCCHHHCCHHHHHHH
Q ss_conf 94224101048999964
Q 537021.9.peg.2 1 MYMMNKEKIGIKTLEKA 17 (38)
Q Consensus 1 mymmnkekigiktleka 17 (38)
|||-.|-+-=||.|+++
T Consensus 1 ~~MP~k~kelik~L~~~ 17 (70)
T d1whza_ 1 MWMPPRPEEVARKLRRL 17 (70)
T ss_dssp CCCCCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHC
T ss_conf 98987899999999988
No 8
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.48 E-value=2.4e+02 Score=11.71 Aligned_cols=14 Identities=57% Similarity=0.928 Sum_probs=9.1
Q ss_pred CCCCHHHCCHHHHHHHH
Q ss_conf 42241010489999642
Q 537021.9.peg.2 2 YMMNKEKIGIKTLEKAI 18 (38)
Q Consensus 2 ymmnkekigiktlekai 18 (38)
|||.+|. +||.|.|
T Consensus 15 YMmG~E~---~tlaKVi 28 (58)
T d1uptb_ 15 YMMGRET---KTMAKVI 28 (58)
T ss_dssp HHTTSSH---HHHHHHH
T ss_pred HHCCCCH---HHHHHHH
T ss_conf 9707641---3799999
No 9
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.17 E-value=2.7e+02 Score=11.49 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 89999642134444322000010003
Q 537021.9.peg.2 11 IKTLEKAIKYETIRACFPLATGYLES 36 (38)
Q Consensus 11 iktlekaikyetiracfplatgyles 36 (38)
+...|+||-.-.+-.||-+..||.-|
T Consensus 10 ls~~E~aigLt~~f~~~L~PaGwVLs 35 (43)
T d1v54m_ 10 TSPKEQAIGLSVTFLSFLLPAGWVLY 35 (43)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 77999999999999999700899999
No 10
>d1dp7p_ a.4.5.20 (P:) Class II MHC transcription factor RFX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.08 E-value=70 Score=14.20 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=13.9
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 010489999642134444322000
Q 537021.9.peg.2 7 EKIGIKTLEKAIKYETIRACFPLA 30 (38)
Q Consensus 7 ekigiktlekaikyetiracfpla 30 (38)
++.+++.+-.|--...||.+||-.
T Consensus 31 ~~~~~~~l~~a~FgKliR~vFP~~ 54 (76)
T d1dp7p_ 31 QEQKLEPVNAASFGKLIRSVFMGL 54 (76)
T ss_dssp HHTTCCCCCHHHHHHHHHHHSTTC
T ss_pred HHCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 981986667778888999988996
Done!