RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.224_1 (38 letters) >gnl|CDD|163072 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 Score = 27.7 bits (62), Expect = 0.64 Identities = 11/36 (30%), Positives = 12/36 (33%), Gaps = 2/36 (5%) Query: 3 MMNKEKIGIKTLEKAIK--YETIRACFPLATGYLES 36 I LE A + E RA L YL S Sbjct: 409 SQGDPSEAIADLETAAQLDPELGRADLLLILSYLRS 444 >gnl|CDD|181324 PRK08251, PRK08251, short chain dehydrogenase; Provisional. Length = 248 Score = 25.7 bits (57), Expect = 2.5 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%) Query: 1 MYMMNKEKIGIKTLEKAIKYETIRACFP 28 +M++ E G+K L KAI+ E RA P Sbjct: 199 PFMVDTET-GVKALVKAIEKEPGRAAVP 225 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.134 0.378 Gapped Lambda K H 0.267 0.0690 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 554,849 Number of extensions: 15914 Number of successful extensions: 47 Number of sequences better than 10.0: 1 Number of HSP's gapped: 47 Number of HSP's successfully gapped: 5 Length of query: 38 Length of database: 5,994,473 Length adjustment: 12 Effective length of query: 26 Effective length of database: 5,735,177 Effective search space: 149114602 Effective search space used: 149114602 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.1 bits)