RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.224_1
         (38 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.0 bits (66), Expect = 0.12
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 7/33 (21%)

Query: 7  EKIGIKTLEKAIK-YETIRACFP-LATGYLEST 37
          EK  +K L+ ++K Y    A  P LA   +++T
Sbjct: 18 EKQALKKLQASLKLYADDSA--PALA---IKAT 45


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.319    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0574    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 300,216
Number of extensions: 7101
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 4
Length of query: 38
Length of database: 5,693,230
Length adjustment: 12
Effective length of query: 26
Effective length of database: 5,402,302
Effective search space: 140459852
Effective search space used: 140459852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.4 bits)