Query         537021.9.peg.227_1
Match_columns 37
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Wed May 25 16:08:36 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_227.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3loy_A Copper amine oxidase; T  39.9      24   0.001   17.1   3.8   28    3-32    249-276 (633)
  2 1ksi_A Copper amine oxidase; P  38.4      26  0.0011   16.9   3.7   23    3-25    237-259 (642)
  3 1w6g_A Phenylethylamine oxidas  37.2      24 0.00099   17.1   3.1   26    3-28    240-265 (646)
  4 3hi7_A Amiloride-sensitive ami  31.1      34  0.0014   16.3   3.8   28    3-32    301-328 (731)
  5 2oqe_A Peroxisomal copper amin  29.0      35  0.0015   16.2   2.9   24    3-26    251-274 (660)
  6 1tu5_A Copper amine oxidase, l  24.3      46  0.0019   15.6   2.9   28    3-32    317-344 (746)
  7 1w7c_A Lysyl oxidase; AMNE oxi  22.5      50  0.0021   15.4   2.9   28    3-32    306-333 (747)
  8 1spu_A Copper amine oxidase; o  19.2      59  0.0025   15.0   2.9   24    3-26    327-350 (727)
  9 2pqr_C WD repeat protein YKR03  17.9      21  0.0009   17.3   0.0   14   12-25      7-20  (64)
 10 2k0r_A Thiol:disulfide interch  14.4      78  0.0033   14.4   2.2   20    5-24     25-44  (128)

No 1  
>3loy_A Copper amine oxidase; TPQ, oxidoreductase; HET: TPQ TLA; 2.00A {Pichia angusta}
Probab=39.93  E-value=24  Score=17.06  Aligned_cols=28  Identities=29%  Similarity=0.721  Sum_probs=22.3

Q ss_pred             EEEEEEEECCCCEEEEEECCCCCCCCEEEE
Q ss_conf             478999973541399983363012330799
Q 537021.9.peg.2    3 TWGLYVSFSSRKGIFLYQNNFYTQEKEVCY   32 (37)
Q Consensus         3 twglyvsfssrkgiflyqnnfytqekevcy   32 (37)
                      -|.++++|.+|.|+-||+-.|  +.+.|-|
T Consensus       249 ~W~f~~~f~~~~Gl~l~dv~~--~~r~v~y  276 (633)
T 3loy_A          249 GWEFFVIPTVREGFAIYDIHF--KGRSVVY  276 (633)
T ss_dssp             TEEEEEEEETTTEEEEEEEEE--TTEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEEEE--CCCEEEE
T ss_conf             867999716876338997456--6803478


No 2  
>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG; 2.20A {Pisum sativum} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w2z_A*
Probab=38.40  E-value=26  Score=16.93  Aligned_cols=23  Identities=26%  Similarity=0.683  Sum_probs=20.6

Q ss_pred             EEEEEEEECCCCEEEEEECCCCC
Q ss_conf             47899997354139998336301
Q 537021.9.peg.2    3 TWGLYVSFSSRKGIFLYQNNFYT   25 (37)
Q Consensus         3 twglyvsfssrkgiflyqnnfyt   25 (37)
                      -|.++++|..|.|+-|++-.|+.
T Consensus       237 ~W~f~~~~~~r~GlvL~dv~~~d  259 (642)
T 1ksi_A          237 NWKFHIGFDVRAGIVISLASIYD  259 (642)
T ss_dssp             TEEEEEEEETTTEEEEEEEEEEE
T ss_pred             CCEEEEEECCCCCCEEEEEEEEC
T ss_conf             96799960787653577778873


No 3  
>1w6g_A Phenylethylamine oxidase; 3D-structure, copper, copper containing, metal-binding, oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL; 1.55A {Arthrobacter globiformis} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A* 2cfg_A* 2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A* 1sih_A* 1sii_A* 1w5z_A* 1iqy_A* 1avl_A* 1av4_A* 1iqx_A* 1iu7_A* 1ivw_A* ...
Probab=37.23  E-value=24  Score=17.11  Aligned_cols=26  Identities=31%  Similarity=0.653  Sum_probs=22.1

Q ss_pred             EEEEEEEECCCCEEEEEECCCCCCCC
Q ss_conf             47899997354139998336301233
Q 537021.9.peg.2    3 TWGLYVSFSSRKGIFLYQNNFYTQEK   28 (37)
Q Consensus         3 twglyvsfssrkgiflyqnnfytqek   28 (37)
                      -|.++++|..|.|+-|++-.|.-.++
T Consensus       240 ~W~f~~~~~~r~Gl~l~~v~~~~~~~  265 (646)
T 1w6g_A          240 KWSLDVGFDVREGVVLHNIAFRDGDR  265 (646)
T ss_dssp             TEEEEEEEETTTEEEEEEEEEEETTE
T ss_pred             CCEEEEEECCCCCCEEEEEEECCCCE
T ss_conf             85799960787552899999838984


No 4  
>3hi7_A Amiloride-sensitive amine oxidase; oxidoreductase, copper amine oxidase, topaquinone, TPQ, diamine oxidase, DAO, human, alternative splicing; HET: TPQ NAG BMA; 1.80A {Homo sapiens} PDB: 3hig_A* 3hii_A* 3k5t_A* 3mph_A*
Probab=31.05  E-value=34  Score=16.27  Aligned_cols=28  Identities=18%  Similarity=0.481  Sum_probs=22.0

Q ss_pred             EEEEEEEECCCCEEEEEECCCCCCCCEEEE
Q ss_conf             478999973541399983363012330799
Q 537021.9.peg.2    3 TWGLYVSFSSRKGIFLYQNNFYTQEKEVCY   32 (37)
Q Consensus         3 twglyvsfssrkgiflyqnnfytqekevcy   32 (37)
                      -|.+++.|..|.|+-|++-.|--  ..|-|
T Consensus       301 ~W~f~~gf~~reGl~l~dv~y~g--r~v~y  328 (731)
T 3hi7_A          301 GWSFAFRLRSSSGLQVLNVHFGG--ERIAY  328 (731)
T ss_dssp             TEEEEEEEETTTEEEEEEEEETT--EEEEE
T ss_pred             CCEEEEECCCCCCEEEEEEEECC--EEEEE
T ss_conf             85799844798515998867898--67577


No 5  
>2oqe_A Peroxisomal copper amine oxidase; protein-derived cofactor, TPQ, XE, xenon complex, oxidoreductase; HET: TPQ; 1.60A {Pichia angusta} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 2oov_A* 2oqe_C* 2oov_C* 3n9h_A* 3nbj_A* 3nbb_A* 1a2v_A* 1ekm_A
Probab=29.02  E-value=35  Score=16.21  Aligned_cols=24  Identities=21%  Similarity=0.494  Sum_probs=20.8

Q ss_pred             EEEEEEEECCCCEEEEEECCCCCC
Q ss_conf             478999973541399983363012
Q 537021.9.peg.2    3 TWGLYVSFSSRKGIFLYQNNFYTQ   26 (37)
Q Consensus         3 twglyvsfssrkgiflyqnnfytq   26 (37)
                      -|.++++|+.|.|+-||+-.|--+
T Consensus       251 ~W~F~vgf~~reGlvL~dV~f~~~  274 (660)
T 2oqe_A          251 NFKFHIGFNYREGIVLSDVSYNDH  274 (660)
T ss_dssp             TEEEEEEEETTTEEEEEEEEEEET
T ss_pred             CCEEEEECCCCCCEEEEEEEECCC
T ss_conf             857999658875428988898389


No 6  
>1tu5_A Copper amine oxidase, liver isozyme; oxidoreductase, quinoenzyme, TPQ; HET: TPQ NAG NDG; 2.37A {Bos taurus} PDB: 2pnc_A* 1us1_A* 1pu4_A* 2c10_A* 2c11_A*
Probab=24.26  E-value=46  Score=15.60  Aligned_cols=28  Identities=14%  Similarity=0.422  Sum_probs=21.8

Q ss_pred             EEEEEEEECCCCEEEEEECCCCCCCCEEEE
Q ss_conf             478999973541399983363012330799
Q 537021.9.peg.2    3 TWGLYVSFSSRKGIFLYQNNFYTQEKEVCY   32 (37)
Q Consensus         3 twglyvsfssrkgiflyqnnfytqekevcy   32 (37)
                      -|.+++.|+.|.|+-|++-.|--  ..|-|
T Consensus       317 ~W~F~~gf~~reGl~L~dv~f~g--rrv~Y  344 (746)
T 1tu5_A          317 LWTFSFGLGAFSGPRVFDVRFQG--ERLAY  344 (746)
T ss_dssp             SEEEEEEEETTTEEEEEEEEETT--EEEEE
T ss_pred             CCEEEEEECCCCCCEEEEEEECC--EEEEE
T ss_conf             98799960687774898667899--78899


No 7  
>1w7c_A Lysyl oxidase; AMNE oxidase, copper, oxidoreductase, quinoprotein, topaquinone enzyme, TPQ; HET: BMA NAG TPQ IMD; 1.23A {Pichia pastoris} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1rky_A* 1n9e_A*
Probab=22.50  E-value=50  Score=15.41  Aligned_cols=28  Identities=36%  Similarity=0.841  Sum_probs=21.8

Q ss_pred             EEEEEEEECCCCEEEEEECCCCCCCCEEEE
Q ss_conf             478999973541399983363012330799
Q 537021.9.peg.2    3 TWGLYVSFSSRKGIFLYQNNFYTQEKEVCY   32 (37)
Q Consensus         3 twglyvsfssrkgiflyqnnfytqekevcy   32 (37)
                      -|.++++|+.|.|+-|++-.|-.  ..|-|
T Consensus       306 ~W~f~~~f~~r~Gl~L~dv~~~g--rri~Y  333 (747)
T 1w7c_A          306 DWGFYTSWSRDTGISFYDITFKG--ERIVY  333 (747)
T ss_dssp             TEEEEEEEETTTEEEEEEEEETT--EEEEE
T ss_pred             CCEEEEECCCCCCEEEEEEEECC--EEEEE
T ss_conf             84799862777660898548778--16677


No 8  
>1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal; HET: PAQ; 2.00A {Escherichia coli} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 d.82.1.1 PDB: 1d6y_A* 1d6u_A* 1d6z_A* 2wgq_A 1oac_A* 1dyu_A* 2w0q_A* 2wo0_A* 2wof_A* 2woh_A* 1lvn_A* 1jrq_A* 1qak_A* 1qaf_A* 1qal_A*
Probab=19.24  E-value=59  Score=15.03  Aligned_cols=24  Identities=21%  Similarity=0.494  Sum_probs=20.7

Q ss_pred             EEEEEEEECCCCEEEEEECCCCCC
Q ss_conf             478999973541399983363012
Q 537021.9.peg.2    3 TWGLYVSFSSRKGIFLYQNNFYTQ   26 (37)
Q Consensus         3 twglyvsfssrkgiflyqnnfytq   26 (37)
                      .|-++++|..|.|+-|++-.|.-.
T Consensus       327 ~W~F~vgf~~reGlvL~dV~y~d~  350 (727)
T 1spu_A          327 NWDFHLSMNSRVGPMISTVTYNDN  350 (727)
T ss_dssp             TEEEEEEEETTTEEEEEEEEEEET
T ss_pred             CCEEEEECCCCCCCEEEEEEEECC
T ss_conf             947999668876618987899589


No 9  
>2pqr_C WD repeat protein YKR036C; TPR domain, protein-protein complex, apoptosis; 1.88A {Saccharomyces cerevisiae}
Probab=17.90  E-value=21  Score=17.33  Aligned_cols=14  Identities=43%  Similarity=0.809  Sum_probs=10.6

Q ss_pred             CCCEEEEEECCCCC
Q ss_conf             54139998336301
Q 537021.9.peg.2   12 SRKGIFLYQNNFYT   25 (37)
Q Consensus        12 srkgiflyqnnfyt   25 (37)
                      ..-|||-+|||+-.
T Consensus         7 gqvgifsfqnnyad   20 (64)
T 2pqr_C            7 GQVGIFSFQNNYAD   20 (64)
T ss_dssp             --------------
T ss_pred             CEEEEEEEECCCCC
T ss_conf             60679984045543


No 10 
>2k0r_A Thiol:disulfide interchange protein DSBD; immunoglobulin, mutant, N-terminal domain, disulfide bond reductase; NMR {Neisseria meningitidis serogroup B} PDB: 2k9f_B
Probab=14.43  E-value=78  Score=14.40  Aligned_cols=20  Identities=30%  Similarity=0.664  Sum_probs=15.3

Q ss_pred             EEEEEECCCCEEEEEECCCC
Q ss_conf             89999735413999833630
Q 537021.9.peg.2    5 GLYVSFSSRKGIFLYQNNFY   24 (37)
Q Consensus         5 glyvsfssrkgiflyqnnfy   24 (37)
                      .+.++|.-..|.+||++.|-
T Consensus        25 ~l~i~~~Ia~gyYLY~dki~   44 (128)
T 2k0r_A           25 GVNVRFRIADGYYMYQAKIV   44 (128)
T ss_dssp             EEEEEEEECTTEEEETTTCE
T ss_pred             EEEEEEEECCCCEEEEEEEE
T ss_conf             89999996899288724688


Done!