RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= 537021.9.peg.227_1 (37 letters) >gnl|CDD|146917 pfam04516, CP2, CP2 transcription factor. This family represents a conserved region in the CP2 transcription factor family. Length = 237 Score = 24.6 bits (54), Expect = 5.9 Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 12/38 (31%) Query: 10 FSSRKGI-----------FLYQNN-FYTQEKEVCYCKV 35 FSS KG+ + ++ + E YC+V Sbjct: 173 FSSSKGVKGVPLRLQIDTYDISSSPGTEEPAERAYCQV 210 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.329 0.140 0.461 Gapped Lambda K H 0.267 0.0727 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 444,813 Number of extensions: 10656 Number of successful extensions: 31 Number of sequences better than 10.0: 1 Number of HSP's gapped: 31 Number of HSP's successfully gapped: 2 Length of query: 37 Length of database: 6,263,737 Length adjustment: 11 Effective length of query: 26 Effective length of database: 6,026,038 Effective search space: 156676988 Effective search space used: 156676988 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 51 (23.4 bits)