RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.227_1
         (37 letters)



>gnl|CDD|146917 pfam04516, CP2, CP2 transcription factor.  This family represents a
           conserved region in the CP2 transcription factor family.
          Length = 237

 Score = 24.6 bits (54), Expect = 5.9
 Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 12/38 (31%)

Query: 10  FSSRKGI-----------FLYQNN-FYTQEKEVCYCKV 35
           FSS KG+           +   ++    +  E  YC+V
Sbjct: 173 FSSSKGVKGVPLRLQIDTYDISSSPGTEEPAERAYCQV 210


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.329    0.140    0.461 

Gapped
Lambda     K      H
   0.267   0.0727    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 444,813
Number of extensions: 10656
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 2
Length of query: 37
Length of database: 6,263,737
Length adjustment: 11
Effective length of query: 26
Effective length of database: 6,026,038
Effective search space: 156676988
Effective search space used: 156676988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.4 bits)