Query 537021.9.peg.232_1 Match_columns 46 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 16:13:55 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_232.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1t4n_A Ribonuclease III; DSRBD 18.3 22 0.00091 17.3 0.1 16 23-38 1-16 (94) 2 3ha4_A MIX1; TPR-like, helix-t 11.4 56 0.0024 15.4 0.7 23 7-33 124-146 (154) 3 2j6b_A AFV3-109; sulfolobus, c 10.9 58 0.0024 15.3 0.6 30 2-34 46-75 (109) 4 2x4i_A CAG38848, uncharacteriz 10.6 57 0.0024 15.3 0.5 30 2-34 48-77 (114) 5 1jr5_A 10 kDa anti-sigma facto 9.0 1.3E+02 0.0055 13.7 2.1 32 1-32 1-32 (90) 6 1t4o_A Ribonuclease III; RNT1P 8.6 94 0.004 14.3 1.0 17 22-38 2-18 (117) 7 3a7o_A Autophagy protein 16; c 7.1 1.1E+02 0.0048 14.0 0.8 14 6-19 50-63 (75) 8 1tuj_A Odorant binding protein 6.9 1E+02 0.0042 14.2 0.5 29 2-30 83-111 (123) 9 1avo_B 11S regulator; proteaso 6.2 1.3E+02 0.0055 13.7 0.8 17 3-19 24-40 (140) 10 2rqp_A Heterochromatin protein 4.0 2.3E+02 0.0095 12.6 0.8 23 16-38 16-38 (88) No 1 >1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1 Probab=18.28 E-value=22 Score=17.28 Aligned_cols=16 Identities=31% Similarity=0.721 Sum_probs=11.6 Q ss_pred HHHHCCCHHHHHHHHH Q ss_conf 3440577778666542 Q 537021.9.peg.2 23 IDEIDMNPKQKISKYV 38 (46) Q Consensus 23 ideidmnpkqkiskyv 38 (46) +|+||+|+|-++-.+. T Consensus 1 ~~~id~naKs~L~e~~ 16 (94) T 1t4n_A 1 MDKLDMNAKRQLYSLI 16 (94) T ss_dssp CCSSCHHHHHHHHHHT T ss_pred CCCCCCCHHHHHHHHH T ss_conf 9845678899999998 No 2 >3ha4_A MIX1; TPR-like, helix-turn-helix, unknown function; 2.40A {Leishmania major} Probab=11.40 E-value=56 Score=15.36 Aligned_cols=23 Identities=39% Similarity=0.758 Sum_probs=15.9 Q ss_pred HHHHHHHCCCCHHHCCHHHHCCCHHHH Q ss_conf 999997145615440634405777786 Q 537021.9.peg.2 7 LVKEIISLNIPRAIANIDEIDMNPKQK 33 (46) Q Consensus 7 lvkeiislnipraianideidmnpkqk 33 (46) -|+||||. ||......|.+|... T Consensus 124 dv~eiism----aiedlenmdl~p~ad 146 (154) T 3ha4_A 124 DVEEIISM----AVDDLENMDLNPAAD 146 (154) T ss_dssp HHHHHHHH----HHHHHHTCCCCC--- T ss_pred CHHHHHHH----HHHHHHHCCCCCCCC T ss_conf 49999999----998887177897767 No 3 >2j6b_A AFV3-109; sulfolobus, crenarchaea, viral protein; 1.3A {Acidianus filamentous virus 1} SCOP: d.321.1.1 PDB: 2j6c_A Probab=10.94 E-value=58 Score=15.32 Aligned_cols=30 Identities=30% Similarity=0.509 Sum_probs=23.3 Q ss_pred CHHHHHHHHHHHCCCCHHHCCHHHHCCCHHHHH Q ss_conf 139999999971456154406344057777866 Q 537021.9.peg.2 2 AATIQLVKEIISLNIPRAIANIDEIDMNPKQKI 34 (46) Q Consensus 2 aatiqlvkeiislnipraianideidmnpkqki 34 (46) .+|.|++..+...|+|- |-.++.+.+-++. T Consensus 46 ~aTA~lls~llg~~ip~---NR~~i~~~~gD~a 75 (109) T 2j6b_A 46 QATAELLSSILGVNVPM---NRVQIKVTHGDRI 75 (109) T ss_dssp HHHHHHHHHHHTSCCCB---CCCCCCBCTTCEE T ss_pred HHHHHHHHHHHCCCCCC---CCEEEEECCCCEE T ss_conf 98999999985874442---5157984489899 No 4 >2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid} Probab=10.56 E-value=57 Score=15.34 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=23.4 Q ss_pred CHHHHHHHHHHHCCCCHHHCCHHHHCCCHHHHH Q ss_conf 139999999971456154406344057777866 Q 537021.9.peg.2 2 AATIQLVKEIISLNIPRAIANIDEIDMNPKQKI 34 (46) Q Consensus 2 aatiqlvkeiislnipraianideidmnpkqki 34 (46) .+|.|++..+...|+|- |-.++-+.|-++. T Consensus 48 ~aTA~lls~llg~~i~~---NR~~i~~~~gD~a 77 (114) T 2x4i_A 48 DSTIQLINSLCGTTFQK---NRVEIKLEKEDKL 77 (114) T ss_dssp HHHHHHHHHHHCCCCCC---CCCCCCBCTTCEE T ss_pred HHHHHHHHHHHCCCCCC---CCEEEEECCCCEE T ss_conf 88999999985871343---6256995589889 No 5 >1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A Probab=9.03 E-value=1.3e+02 Score=13.68 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=17.7 Q ss_pred CCHHHHHHHHHHHCCCCHHHCCHHHHCCCHHH Q ss_conf 91399999999714561544063440577778 Q 537021.9.peg.2 1 MAATIQLVKEIISLNIPRAIANIDEIDMNPKQ 32 (46) Q Consensus 1 maatiqlvkeiislnipraianideidmnpkq 32 (46) |.+.|.+++|||+.-------.-|+|-+|.+- T Consensus 1 mn~~iE~v~eIiaiaSiLIKf~~edIl~~q~~ 32 (90) T 1jr5_A 1 MNKNIDTVREIITVASILIKFSREDIVENRAN 32 (90) T ss_dssp CCSHHHHHHHHHHHHHHHHHTTCHHHHTCHHH T ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH T ss_conf 97329999999999999998279999872999 No 6 >1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B Probab=8.55 E-value=94 Score=14.33 Aligned_cols=17 Identities=29% Similarity=0.634 Sum_probs=12.2 Q ss_pred CHHHHCCCHHHHHHHHH Q ss_conf 63440577778666542 Q 537021.9.peg.2 22 NIDEIDMNPKQKISKYV 38 (46) Q Consensus 22 nideidmnpkqkiskyv 38 (46) ..|+||+|+|.++-.+. T Consensus 2 ~~~~id~n~Ks~L~e~~ 18 (117) T 1t4o_A 2 KTDKLDMNAKRQLYSLI 18 (117) T ss_dssp -CCCCCTTHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHH T ss_conf 77647868999999998 No 7 >3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae} Probab=7.11 E-value=1.1e+02 Score=13.95 Aligned_cols=14 Identities=36% Similarity=0.382 Sum_probs=9.5 Q ss_pred HHHHHHHHCCCCHH Q ss_conf 99999971456154 Q 537021.9.peg.2 6 QLVKEIISLNIPRA 19 (46) Q Consensus 6 qlvkeiislnipra 19 (46) .|-.|+||+||-.- T Consensus 50 rLNDElIslNIENN 63 (75) T 3a7o_A 50 RLNDELISGTIENN 63 (75) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 86288887478878 No 8 >1tuj_A Odorant binding protein Asp2; alpha helix, complex, TSP, transport protein; HET: TSD; NMR {Apis mellifera} Probab=6.87 E-value=1e+02 Score=14.20 Aligned_cols=29 Identities=38% Similarity=0.397 Sum_probs=20.9 Q ss_pred CHHHHHHHHHHHCCCCHHHCCHHHHCCCH Q ss_conf 13999999997145615440634405777 Q 537021.9.peg.2 2 AATIQLVKEIISLNIPRAIANIDEIDMNP 30 (46) Q Consensus 2 aatiqlvkeiislnipraianideidmnp 30 (46) |..|||||.|-.--|..|-...||-.... T Consensus 83 addiqlvkgianecienakgetdecnign 111 (123) T 1tuj_A 83 ADDIQLVKGIANECIENAKGETDECNIGN 111 (123) T ss_dssp SHHHHHHHHHHHHHHHHHTTCSSHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 14789999888999873468865464577 No 9 >1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1 Probab=6.23 E-value=1.3e+02 Score=13.66 Aligned_cols=17 Identities=35% Similarity=0.634 Sum_probs=13.2 Q ss_pred HHHHHHHHHHHCCCCHH Q ss_conf 39999999971456154 Q 537021.9.peg.2 3 ATIQLVKEIISLNIPRA 19 (46) Q Consensus 3 atiqlvkeiislnipra 19 (46) .++..||.-|+|+||+- T Consensus 24 e~~~~vk~WI~l~IPki 40 (140) T 1avo_B 24 EQLNLVTTWLQLQIPRI 40 (140) T ss_dssp HHHHHHHHHHHHTCCCC T ss_pred HHHHHHHHHHHHHCCCC T ss_conf 99989999998817754 No 10 >2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens} Probab=4.00 E-value=2.3e+02 Score=12.56 Aligned_cols=23 Identities=22% Similarity=0.210 Sum_probs=0.0 Q ss_pred CCHHHCCHHHHCCCHHHHHHHHH Q ss_conf 61544063440577778666542 Q 537021.9.peg.2 16 IPRAIANIDEIDMNPKQKISKYV 38 (46) Q Consensus 16 ipraianideidmnpkqkiskyv 38 (46) |..||..++|-.--..|.|.||+ T Consensus 16 I~eAI~~l~er~GsS~~AI~kyI 38 (88) T 2rqp_A 16 LTEAIKACFQKSGASVVAIRKYI 38 (88) T ss_dssp HHHHHHHHHHHTCCCHHHHHHHH T ss_pred HHHHHHHCCCCCCCCHHHHHHHH T ss_conf 99999982998995999999999 Done!