RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= 537021.9.peg.232_1 (46 letters) >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 Score = 24.2 bits (51), Expect = 6.9 Identities = 9/25 (36%), Positives = 10/25 (40%) Query: 16 IPRAIANIDEIDMNPKQKISKYVIP 40 IPR D I M KI + I Sbjct: 474 IPRKFIYQDHIQMTANGKIDRKRIG 498 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.318 0.133 0.347 Gapped Lambda K H 0.267 0.0421 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 372,396 Number of extensions: 10989 Number of successful extensions: 56 Number of sequences better than 10.0: 1 Number of HSP's gapped: 56 Number of HSP's successfully gapped: 3 Length of query: 46 Length of database: 5,693,230 Length adjustment: 19 Effective length of query: 27 Effective length of database: 5,232,594 Effective search space: 141280038 Effective search space used: 141280038 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.8 bits)