RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.232_1
         (46 letters)



>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
           non-ribosomal peptide synthetase, NRPS, adenylation
           domain, D-alanylation; HET: AMP; 2.28A {Bacillus
           subtilis} PDB: 3e7x_A*
          Length = 511

 Score = 24.2 bits (51), Expect = 6.9
 Identities = 9/25 (36%), Positives = 10/25 (40%)

Query: 16  IPRAIANIDEIDMNPKQKISKYVIP 40
           IPR     D I M    KI +  I 
Sbjct: 474 IPRKFIYQDHIQMTANGKIDRKRIG 498


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.318    0.133    0.347 

Gapped
Lambda     K      H
   0.267   0.0421    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 372,396
Number of extensions: 10989
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 3
Length of query: 46
Length of database: 5,693,230
Length adjustment: 19
Effective length of query: 27
Effective length of database: 5,232,594
Effective search space: 141280038
Effective search space used: 141280038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.8 bits)