RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= 537021.9.peg.232_1 (46 letters) >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 Score = 24.2 bits (51), Expect = 3.3 Identities = 5/25 (20%), Positives = 10/25 (40%) Query: 16 IPRAIANIDEIDMNPKQKISKYVIP 40 IP + ++ K+SK + Sbjct: 502 IPDRVEFVESFPQTGVGKVSKKALR 526 >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 Score = 24.1 bits (51), Expect = 3.4 Identities = 6/25 (24%), Positives = 12/25 (48%) Query: 16 IPRAIANIDEIDMNPKQKISKYVIP 40 IP +D++ + KI + +P Sbjct: 484 IPSYFIQLDKMPLTSNGKIDRKQLP 508 >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 Score = 23.3 bits (49), Expect = 5.6 Identities = 6/25 (24%), Positives = 9/25 (36%) Query: 16 IPRAIANIDEIDMNPKQKISKYVIP 40 +P A +EI K K + Sbjct: 500 LPDAYVFAEEIPRTSAGKFLKRALR 524 >d1riia_ c.60.1.1 (A:) Phosphoglycerate mutase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 243 Score = 23.0 bits (48), Expect = 7.7 Identities = 8/29 (27%), Positives = 13/29 (44%) Query: 9 KEIISLNIPRAIANIDEIDMNPKQKISKY 37 EI+ LNIP I ++D + + Sbjct: 199 DEIVGLNIPTGIPLRYDLDSAMRPLVRGG 227 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.318 0.133 0.347 Gapped Lambda K H 0.267 0.0411 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 161,280 Number of extensions: 4827 Number of successful extensions: 26 Number of sequences better than 10.0: 1 Number of HSP's gapped: 26 Number of HSP's successfully gapped: 8 Length of query: 46 Length of database: 2,407,596 Length adjustment: 18 Effective length of query: 28 Effective length of database: 2,160,456 Effective search space: 60492768 Effective search space used: 60492768 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 47 (22.7 bits)