RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.233_1
         (72 letters)



>gnl|CDD|143918 pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5). 
          Length = 276

 Score = 24.6 bits (54), Expect = 6.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 32 IFNKIDTTVNIIKNNGIIVII 52
            N++D  V+   +NG+ VII
Sbjct: 63 WLNRVDEVVDAAIDNGMYVII 83


>gnl|CDD|107356 cd06361, PBP1_GPC6A_like, Ligand-binding domain of the promiscuous
           L-alpha-amino acid receptor GPRC6A which is a
           broad-spectrum amino acid-sensing receptor.  This family
           includes the ligand-binding domain of the promiscuous
           L-alpha-amino acid receptor GPRC6A which is a
           broad-spectrum amino acid-sensing receptor, and its fish
           homolog, the 5.24 chemoreceptor. GPRC6A is a member of
           the family C of G-protein-coupled receptors that
           transduce extracellular signals into G-protein
           activation and ultimately into cellular responses.
          Length = 403

 Score = 24.1 bits (52), Expect = 9.7
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 8/39 (20%)

Query: 15  PNILSSNTERIRIGVLIIFNKIDTTVNIIKNNGIIVIII 53
           P  LS NT+  RI        I TT  II+ N + VI++
Sbjct: 210 PASLSDNTKLNRI--------IRTTEKIIEENKVNVIVV 240


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.320    0.138    0.384 

Gapped
Lambda     K      H
   0.267   0.0709    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 828,236
Number of extensions: 34875
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 7
Length of query: 72
Length of database: 6,263,737
Length adjustment: 43
Effective length of query: 29
Effective length of database: 5,334,550
Effective search space: 154701950
Effective search space used: 154701950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)