RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.233_1 (72 letters) >gnl|CDD|163324 TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by Rv1855c from Mycobacterium tuberculosis. Length = 227 Score = 26.9 bits (60), Expect = 1.1 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 7/38 (18%) Query: 18 LSSNTERIRIGVLIIFNKIDTTVNIIKNNGIIVIIIAT 55 L+ T RIR+G L+ T ++ G++ ++AT Sbjct: 59 LARETSRIRLGTLV-------TGVTYRHPGLLAKMVAT 89 >gnl|CDD|128774 smart00498, FH2, Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain. Length = 432 Score = 25.4 bits (56), Expect = 3.2 Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%) Query: 26 RIGVLIIFNKIDTTVNIIKNNGIIVIIIATCLLLKNSDTLSK 67 R+ L+ + V +K + + A C L+ S K Sbjct: 162 RLNALLFKANFEEEVEDLKPQ--LEKVEAACEELRESKKFRK 201 >gnl|CDD|183224 PRK11598, PRK11598, putative metal dependent hydrolase; Provisional. Length = 545 Score = 24.3 bits (53), Expect = 7.8 Identities = 5/21 (23%), Positives = 16/21 (76%) Query: 31 IIFNKIDTTVNIIKNNGIIVI 51 ++F+ ++ +N ++ +G+IV+ Sbjct: 358 VLFHGLENYINNLQGDGVIVL 378 >gnl|CDD|178861 PRK00098, PRK00098, GTPase RsgA; Reviewed. Length = 298 Score = 24.0 bits (53), Expect = 8.1 Identities = 7/17 (41%), Positives = 9/17 (52%) Query: 23 ERIRIGVLIIFNKIDTT 39 E I +I+ NKID Sbjct: 108 EANGIKPIIVLNKIDLL 124 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.138 0.384 Gapped Lambda K H 0.267 0.0819 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 1,119,074 Number of extensions: 55692 Number of successful extensions: 133 Number of sequences better than 10.0: 1 Number of HSP's gapped: 133 Number of HSP's successfully gapped: 14 Length of query: 72 Length of database: 5,994,473 Length adjustment: 43 Effective length of query: 29 Effective length of database: 5,065,329 Effective search space: 146894541 Effective search space used: 146894541 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (22.9 bits)