RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.233_1
         (72 letters)



>gnl|CDD|163324 TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase,
          Rv1855c family.  Coenzyme F420 has a limited
          phylogenetic distribution, including methanogenic
          archaea, Mycobacterium tuberculosis and related
          species, Colwellia psychrerythraea 34H,
          Rhodopseudomonas palustris HaA2, and others. Partial
          phylogenetic profiling identifies protein subfamilies,
          within the larger family called luciferase-like
          monooxygenanases (pfam00296), that appear only in
          F420-positive genomes and are likely to be
          F420-dependent. This model describes one such
          subfamily, exemplified by Rv1855c from Mycobacterium
          tuberculosis.
          Length = 227

 Score = 26.9 bits (60), Expect = 1.1
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 7/38 (18%)

Query: 18 LSSNTERIRIGVLIIFNKIDTTVNIIKNNGIIVIIIAT 55
          L+  T RIR+G L+       T    ++ G++  ++AT
Sbjct: 59 LARETSRIRLGTLV-------TGVTYRHPGLLAKMVAT 89


>gnl|CDD|128774 smart00498, FH2, Formin Homology 2 Domain.  FH proteins control
           rearrangements of the actin cytoskeleton, especially in
           the context of cytokinesis and cell polarisation.
           Members of this family have been found to interact with
           Rho-GTPases, profilin and other actin-assoziated
           proteins. These interactions are mediated by the
           proline-rich FH1 domain, usually located in front of FH2
           (but not listed in SMART). Despite this cytosolic
           function, vertebrate formins have been assigned
           functions within the nucleus. A set of Formin-Binding
           Proteins (FBPs) has been shown to bind FH1 with their WW
           domain.
          Length = 432

 Score = 25.4 bits (56), Expect = 3.2
 Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%)

Query: 26  RIGVLIIFNKIDTTVNIIKNNGIIVIIIATCLLLKNSDTLSK 67
           R+  L+     +  V  +K    +  + A C  L+ S    K
Sbjct: 162 RLNALLFKANFEEEVEDLKPQ--LEKVEAACEELRESKKFRK 201


>gnl|CDD|183224 PRK11598, PRK11598, putative metal dependent hydrolase;
           Provisional.
          Length = 545

 Score = 24.3 bits (53), Expect = 7.8
 Identities = 5/21 (23%), Positives = 16/21 (76%)

Query: 31  IIFNKIDTTVNIIKNNGIIVI 51
           ++F+ ++  +N ++ +G+IV+
Sbjct: 358 VLFHGLENYINNLQGDGVIVL 378


>gnl|CDD|178861 PRK00098, PRK00098, GTPase RsgA; Reviewed.
          Length = 298

 Score = 24.0 bits (53), Expect = 8.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 23  ERIRIGVLIIFNKIDTT 39
           E   I  +I+ NKID  
Sbjct: 108 EANGIKPIIVLNKIDLL 124


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.138    0.384 

Gapped
Lambda     K      H
   0.267   0.0819    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,119,074
Number of extensions: 55692
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 14
Length of query: 72
Length of database: 5,994,473
Length adjustment: 43
Effective length of query: 29
Effective length of database: 5,065,329
Effective search space: 146894541
Effective search space used: 146894541
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (22.9 bits)