RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= 537021.9.peg.233_1 (72 letters) >3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} (A:1-71,A:122-166) Length = 116 Score = 28.0 bits (63), Expect = 0.51 Identities = 5/29 (17%), Positives = 14/29 (48%) Query: 27 IGVLIIFNKIDTTVNIIKNNGIIVIIIAT 55 + VL++ +D + + V+ ++T Sbjct: 63 VDVLLLSEDVDEFSELADKSNAKVVFVST 91 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.320 0.138 0.384 Gapped Lambda K H 0.267 0.0623 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 502,830 Number of extensions: 16959 Number of successful extensions: 45 Number of sequences better than 10.0: 1 Number of HSP's gapped: 45 Number of HSP's successfully gapped: 5 Length of query: 72 Length of database: 4,956,049 Length adjustment: 38 Effective length of query: 34 Effective length of database: 3,671,459 Effective search space: 124829606 Effective search space used: 124829606 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.3 bits)