RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= 537021.9.peg.233_1 (72 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 30.7 bits (69), Expect = 0.083 Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 23/78 (29%) Query: 8 RTPPKAHPNIL--SSNTERIRIGVLIIFN---KIDTTVN-----------IIKNNGIIVI 51 R K + L + ++ IF D ++ + ++ Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVA--IFGGQGNTDDYFEELRDLYQTYHVLVGD---LIK 189 Query: 52 IIATCL--LLKNSDTLSK 67 A L L++ + K Sbjct: 190 FSAETLSELIRTTLDAEK 207 Score = 28.0 bits (62), Expect = 0.53 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 13/45 (28%) Query: 27 IGVLIIFNKIDTTVNIIKNNGIIVIIIATCLLLKNSDTLSKSIGY 71 +GVL NK D T G+ VI+ T L N D G+ Sbjct: 512 LGVLTHRNK-DGT-------GVRVIVAGT--LDINPDD---DYGF 543 >3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM glucanase, carbohydrate metabolism, cellulose degradation, glycosidase; HET: BTB; 2.10A {Clostridium cellulovorans} Length = 515 Score = 27.7 bits (61), Expect = 0.59 Identities = 5/20 (25%), Positives = 10/20 (50%) Query: 33 FNKIDTTVNIIKNNGIIVII 52 +++ N +N + VII Sbjct: 85 MKRVEEIANYAFDNDMYVII 104 >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* Length = 444 Score = 24.6 bits (52), Expect = 5.0 Identities = 6/21 (28%), Positives = 10/21 (47%) Query: 10 PPKAHPNILSSNTERIRIGVL 30 P NI N +++RI + Sbjct: 6 PSSTLFNIFDFNPKKVRIAFI 26 >1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of glycosyl hydrolase, cellulose degradation; 1.60A {Clostridium cellulolyticum H10} SCOP: c.1.8.3 Length = 380 Score = 24.4 bits (52), Expect = 6.1 Identities = 6/20 (30%), Positives = 11/20 (55%) Query: 33 FNKIDTTVNIIKNNGIIVII 52 N++ VN +N + VI+ Sbjct: 100 MNRVQEVVNYCIDNKMYVIL 119 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.138 0.384 Gapped Lambda K H 0.267 0.0624 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 599,589 Number of extensions: 22357 Number of successful extensions: 95 Number of sequences better than 10.0: 1 Number of HSP's gapped: 95 Number of HSP's successfully gapped: 13 Length of query: 72 Length of database: 5,693,230 Length adjustment: 42 Effective length of query: 30 Effective length of database: 4,674,982 Effective search space: 140249460 Effective search space used: 140249460 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.3 bits)