RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.233_1
         (72 letters)



>d1uoza_ c.6.1.1 (A:) Putative cellulase Rv0062 (Cel6, CelA1)
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 301

 Score = 23.6 bits (51), Expect = 4.9
 Identities = 3/19 (15%), Positives = 9/19 (47%)

Query: 34  NKIDTTVNIIKNNGIIVII 52
             ID   + + ++   +I+
Sbjct: 106 GWIDAVASGLGSSPATIIV 124


>d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini
           [TaxId: 2094]}
          Length = 409

 Score = 23.2 bits (49), Expect = 5.7
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 18  LSSNTERIRIGVLIIFNKIDTTVNIIKNNGIIVIII 53
             +N   IR GV+I +++ + T   ++  GI V+  
Sbjct: 348 DGTNYLAIRPGVVIGYSRNEKTNAALEAAGIKVLPF 383


>d2bodx1 c.6.1.1 (X:2-286) Cellulase E2 {Thermomonospora fusca,
           strain yx [TaxId: 2021]}
          Length = 285

 Score = 22.9 bits (49), Expect = 6.7
 Identities = 5/17 (29%), Positives = 8/17 (47%)

Query: 36  IDTTVNIIKNNGIIVII 52
           ID     +KN    +I+
Sbjct: 97  IDEFAAGLKNRPAYIIV 113


>d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa
           [TaxId: 287]}
          Length = 412

 Score = 22.8 bits (48), Expect = 8.0
 Identities = 8/36 (22%), Positives = 19/36 (52%)

Query: 18  LSSNTERIRIGVLIIFNKIDTTVNIIKNNGIIVIII 53
             +N   +  GV++ +++   T  +++  G+ VI I
Sbjct: 352 DGNNVVCLEPGVVVGYDRNTYTNTLLRKAGVEVITI 387


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.384 

Gapped
Lambda     K      H
   0.267   0.0536    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 259,569
Number of extensions: 9824
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 8
Length of query: 72
Length of database: 2,407,596
Length adjustment: 40
Effective length of query: 32
Effective length of database: 1,858,396
Effective search space: 59468672
Effective search space used: 59468672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)