Query 537021.9.peg.237_1 Match_columns 50 No_of_seqs 7 out of 9 Neff 1.9 Searched_HMMs 23785 Date Wed May 25 16:09:34 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_237.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3e6m_A MARR family transcripti 8.2 1.1E+02 0.0046 12.4 3.3 32 2-33 26-62 (161) 2 2ari_A Envelope polyprotein GP 6.5 1.2E+02 0.0049 12.2 0.6 15 1-15 8-22 (39) 3 2xl1_A Arginine attenuator pep 5.1 1.5E+02 0.0064 11.7 0.5 18 13-30 5-22 (26) 4 2grg_A Hypothetical protein; Y 3.6 1.5E+02 0.0065 11.6 -0.4 14 36-49 17-30 (120) 5 3cjn_A Transcriptional regulat 3.3 2.4E+02 0.01 10.7 2.4 32 2-33 25-61 (162) 6 1j8r_A PAPG adhesin, pyeloneph 3.1 1.7E+02 0.0071 11.4 -0.6 10 41-50 182-191 (196) 7 2g9p_A Antimicrobial peptide l 2.6 2.9E+02 0.012 10.3 1.1 11 16-26 9-19 (26) 8 1zxu_A AT5G01750 protein; PFAM 2.5 3E+02 0.012 10.2 2.1 18 4-21 198-215 (217) 9 3mk7_C Cytochrome C oxidase, C 2.4 3.1E+02 0.013 10.1 1.9 13 25-37 56-68 (311) 10 1yew_B Particulate methane mon 2.3 3.2E+02 0.013 10.0 3.6 23 20-42 19-41 (247) No 1 >3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} Probab=8.24 E-value=1.1e+02 Score=12.37 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=21.6 Q ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 467999999-----99999841034799999999999 Q 537021.9.peg.2 2 FLPFLIAFL-----VSISLILKQRKISYILLLILFII 33 (50) Q Consensus 2 FlPFLiAl~-----~~~~~i~~k~klsY~Lw~iL~ii 33 (50) |+||++... ....-..++..+|+.-|.+|.++ T Consensus 26 ~l~~~l~~~~~~~~~~~~~~l~~~gLt~~q~~vL~~l 62 (161) T 3e6m_A 26 FLPYLLTRITHIWSSELNQALASEKLPTPKLRLLSSL 62 (161) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 9999999999999999999997869799999999999 No 2 >2ari_A Envelope polyprotein GP160; HIV, fusion, peptide, domain, membrane, micelle, viral protein; NMR {Human immunodeficiency virus 1} PDB: 2jnr_B Probab=6.46 E-value=1.2e+02 Score=12.22 Aligned_cols=15 Identities=33% Similarity=0.370 Sum_probs=10.0 Q ss_pred CHHHHHHHHHHHHHH Q ss_conf 946799999999999 Q 537021.9.peg.2 1 MFLPFLIAFLVSISL 15 (50) Q Consensus 1 MFlPFLiAl~~~~~~ 15 (50) |||-||-|-+-.|+. T Consensus 8 ~flGfLgaAGSTMGA 22 (39) T 2ari_A 8 LFLGFLGAAGSTMGA 22 (39) T ss_dssp HHHHHHHHHHHHHTT T ss_pred HHHHHHHCCCCCCCH T ss_conf 998763214343330 No 3 >2xl1_A Arginine attenuator peptide; translation, antibiotic, ribosome, cytomegalovirus; NMR {Neurospora crassa} Probab=5.10 E-value=1.5e+02 Score=11.66 Aligned_cols=18 Identities=28% Similarity=0.110 Sum_probs=13.1 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999841034799999999 Q 537021.9.peg.2 13 ISLILKQRKISYILLLIL 30 (50) Q Consensus 13 ~~~i~~k~klsY~Lw~iL 30 (50) +++...|+-+|--||-.| T Consensus 5 psvftsqdylsdhlwral 22 (26) T 2xl1_A 5 PSVFTSQDYLSDHLWRAL 22 (26) T ss_pred CCEEECHHHHHHHHHHHH T ss_conf 753010778889999987 No 4 >2grg_A Hypothetical protein; YNR034W-AP; helix/beta strand protein, structural genomics, PSI, protein structure initiative; NMR {Saccharomyces cerevisiae} SCOP: d.110.10.1 Probab=3.58 E-value=1.5e+02 Score=11.62 Aligned_cols=14 Identities=29% Similarity=0.550 Sum_probs=9.6 Q ss_pred HHHHHHHHCCCCCC Q ss_conf 99988632220024 Q 537021.9.peg.2 36 LLFKYHATNNINLS 49 (50) Q Consensus 36 l~Fk~Hat~~lnLS 49 (50) +.|.-|+.+++||+ T Consensus 17 ~~~~~~~~~s~~l~ 30 (120) T 2grg_A 17 LYFQGHMKSSIPIT 30 (120) T ss_dssp ------CCCCEEHH T ss_pred EEEECCCCCCCCHH T ss_conf 57720012566188 No 5 >3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} Probab=3.27 E-value=2.4e+02 Score=10.66 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=21.1 Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 46799999-----999999841034799999999999 Q 537021.9.peg.2 2 FLPFLIAF-----LVSISLILKQRKISYILLLILFII 33 (50) Q Consensus 2 FlPFLiAl-----~~~~~~i~~k~klsY~Lw~iL~ii 33 (50) |+||++.- ...+....++..+|+.-|.+|..| T Consensus 25 ~l~y~l~r~~~~~~~~~~~~l~~~gLt~~q~~iL~~l 61 (162) T 3cjn_A 25 YAPYLMNRIMGRYNANLRKEMTALGLSTAKMRALAIL 61 (162) T ss_dssp CHHHHHHHHHHHHHHHHHTTHHHHTCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 5999999999999999999998859599999999999 No 6 >1j8r_A PAPG adhesin, pyelonephritic adhesin; PAG adhesin, GBO4, structural genomics, PSI, protein structure initiative; HET: NGA GLA GAL BGC; 1.80A {Escherichia coli} SCOP: b.2.3.3 PDB: 1j8s_A Probab=3.11 E-value=1.7e+02 Score=11.41 Aligned_cols=10 Identities=20% Similarity=0.311 Sum_probs=5.9 Q ss_pred HHHCCCCCCC Q ss_conf 6322200249 Q 537021.9.peg.2 41 HATNNINLSF 50 (50) Q Consensus 41 Hat~~lnLSF 50 (50) -|||++++|| T Consensus 182 P~~ntl~~sf 191 (196) T 1j8r_A 182 PRENEMLFLF 191 (196) T ss_dssp CCCEEEEEEE T ss_pred CCCCEEEEEE T ss_conf 8787399997 No 7 >2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic} Probab=2.62 E-value=2.9e+02 Score=10.27 Aligned_cols=11 Identities=27% Similarity=0.534 Sum_probs=7.8 Q ss_pred HHHHHHHHHHH Q ss_conf 84103479999 Q 537021.9.peg.2 16 ILKQRKISYIL 26 (50) Q Consensus 16 i~~k~klsY~L 26 (50) -+|.+.+||.. T Consensus 9 kfgrkaisyav 19 (26) T 2g9p_A 9 KFGRKAISYAV 19 (26) T ss_dssp HHTSHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99199999999 No 8 >1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A Probab=2.50 E-value=3e+02 Score=10.18 Aligned_cols=18 Identities=11% Similarity=0.408 Sum_probs=13.4 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 799999999999841034 Q 537021.9.peg.2 4 PFLIAFLVSISLILKQRK 21 (50) Q Consensus 4 PFLiAl~~~~~~i~~k~k 21 (50) .|.+|+.+++-.|++.++ T Consensus 198 ali~alvi~iD~i~~e~~ 215 (217) T 1zxu_A 198 AFIASLVVILDDVNREDR 215 (217) T ss_dssp HHHHHHHHHHHHHHC--- T ss_pred HHHHHHHHHHHHHHCCCC T ss_conf 999999999875404144 No 9 >3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri} Probab=2.40 E-value=3.1e+02 Score=10.11 Aligned_cols=13 Identities=31% Similarity=0.529 Sum_probs=8.6 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999999 Q 537021.9.peg.2 25 ILLLILFIITILL 37 (50) Q Consensus 25 ~Lw~iL~iitil~ 37 (50) .-|+.+|++||.| T Consensus 56 ~ww~~~f~~tiv~ 68 (311) T 3mk7_C 56 RWWFLLFIGTLVF 68 (311) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 8999999999999 No 10 >1yew_B Particulate methane monooxygenase, A subunit; membrane protein, copper, zinc, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus str} Probab=2.27 E-value=3.2e+02 Score=10.02 Aligned_cols=23 Identities=26% Similarity=0.668 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 34799999999999999998863 Q 537021.9.peg.2 20 RKISYILLLILFIITILLFKYHA 42 (50) Q Consensus 20 ~klsY~Lw~iL~iitil~Fk~Ha 42 (50) |++.|..+.++|.+++=.|.-|. T Consensus 19 r~~d~~~~~~~f~~~~g~~hih~ 41 (247) T 1yew_B 19 RTIDWMALFVVFFVIVGSYHIHA 41 (247) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH T ss_pred EEEHHHHHHHHHHHHHHHHHHHH T ss_conf 10168999999999999999999 Done!