Query         537021.9.peg.237_1
Match_columns 50
No_of_seqs    7 out of 9
Neff          1.9 
Searched_HMMs 23785
Date          Wed May 25 16:09:34 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_237.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3e6m_A MARR family transcripti   8.2 1.1E+02  0.0046   12.4   3.3   32    2-33     26-62  (161)
  2 2ari_A Envelope polyprotein GP   6.5 1.2E+02  0.0049   12.2   0.6   15    1-15      8-22  (39)
  3 2xl1_A Arginine attenuator pep   5.1 1.5E+02  0.0064   11.7   0.5   18   13-30      5-22  (26)
  4 2grg_A Hypothetical protein; Y   3.6 1.5E+02  0.0065   11.6  -0.4   14   36-49     17-30  (120)
  5 3cjn_A Transcriptional regulat   3.3 2.4E+02    0.01   10.7   2.4   32    2-33     25-61  (162)
  6 1j8r_A PAPG adhesin, pyeloneph   3.1 1.7E+02  0.0071   11.4  -0.6   10   41-50    182-191 (196)
  7 2g9p_A Antimicrobial peptide l   2.6 2.9E+02   0.012   10.3   1.1   11   16-26      9-19  (26)
  8 1zxu_A AT5G01750 protein; PFAM   2.5   3E+02   0.012   10.2   2.1   18    4-21    198-215 (217)
  9 3mk7_C Cytochrome C oxidase, C   2.4 3.1E+02   0.013   10.1   1.9   13   25-37     56-68  (311)
 10 1yew_B Particulate methane mon   2.3 3.2E+02   0.013   10.0   3.6   23   20-42     19-41  (247)

No 1  
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=8.24  E-value=1.1e+02  Score=12.37  Aligned_cols=32  Identities=25%  Similarity=0.438  Sum_probs=21.6

Q ss_pred             HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             467999999-----99999841034799999999999
Q 537021.9.peg.2    2 FLPFLIAFL-----VSISLILKQRKISYILLLILFII   33 (50)
Q Consensus         2 FlPFLiAl~-----~~~~~i~~k~klsY~Lw~iL~ii   33 (50)
                      |+||++...     ....-..++..+|+.-|.+|.++
T Consensus        26 ~l~~~l~~~~~~~~~~~~~~l~~~gLt~~q~~vL~~l   62 (161)
T 3e6m_A           26 FLPYLLTRITHIWSSELNQALASEKLPTPKLRLLSSL   62 (161)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             9999999999999999999997869799999999999


No 2  
>2ari_A Envelope polyprotein GP160; HIV, fusion, peptide, domain, membrane, micelle, viral protein; NMR {Human immunodeficiency virus 1} PDB: 2jnr_B
Probab=6.46  E-value=1.2e+02  Score=12.22  Aligned_cols=15  Identities=33%  Similarity=0.370  Sum_probs=10.0

Q ss_pred             CHHHHHHHHHHHHHH
Q ss_conf             946799999999999
Q 537021.9.peg.2    1 MFLPFLIAFLVSISL   15 (50)
Q Consensus         1 MFlPFLiAl~~~~~~   15 (50)
                      |||-||-|-+-.|+.
T Consensus         8 ~flGfLgaAGSTMGA   22 (39)
T 2ari_A            8 LFLGFLGAAGSTMGA   22 (39)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCCCCCH
T ss_conf             998763214343330


No 3  
>2xl1_A Arginine attenuator peptide; translation, antibiotic, ribosome, cytomegalovirus; NMR {Neurospora crassa}
Probab=5.10  E-value=1.5e+02  Score=11.66  Aligned_cols=18  Identities=28%  Similarity=0.110  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             999841034799999999
Q 537021.9.peg.2   13 ISLILKQRKISYILLLIL   30 (50)
Q Consensus        13 ~~~i~~k~klsY~Lw~iL   30 (50)
                      +++...|+-+|--||-.|
T Consensus         5 psvftsqdylsdhlwral   22 (26)
T 2xl1_A            5 PSVFTSQDYLSDHLWRAL   22 (26)
T ss_pred             CCEEECHHHHHHHHHHHH
T ss_conf             753010778889999987


No 4  
>2grg_A Hypothetical protein; YNR034W-AP; helix/beta strand protein, structural genomics, PSI, protein structure initiative; NMR {Saccharomyces cerevisiae} SCOP: d.110.10.1
Probab=3.58  E-value=1.5e+02  Score=11.62  Aligned_cols=14  Identities=29%  Similarity=0.550  Sum_probs=9.6

Q ss_pred             HHHHHHHHCCCCCC
Q ss_conf             99988632220024
Q 537021.9.peg.2   36 LLFKYHATNNINLS   49 (50)
Q Consensus        36 l~Fk~Hat~~lnLS   49 (50)
                      +.|.-|+.+++||+
T Consensus        17 ~~~~~~~~~s~~l~   30 (120)
T 2grg_A           17 LYFQGHMKSSIPIT   30 (120)
T ss_dssp             ------CCCCEEHH
T ss_pred             EEEECCCCCCCCHH
T ss_conf             57720012566188


No 5  
>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=3.27  E-value=2.4e+02  Score=10.66  Aligned_cols=32  Identities=16%  Similarity=0.244  Sum_probs=21.1

Q ss_pred             HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             46799999-----999999841034799999999999
Q 537021.9.peg.2    2 FLPFLIAF-----LVSISLILKQRKISYILLLILFII   33 (50)
Q Consensus         2 FlPFLiAl-----~~~~~~i~~k~klsY~Lw~iL~ii   33 (50)
                      |+||++.-     ...+....++..+|+.-|.+|..|
T Consensus        25 ~l~y~l~r~~~~~~~~~~~~l~~~gLt~~q~~iL~~l   61 (162)
T 3cjn_A           25 YAPYLMNRIMGRYNANLRKEMTALGLSTAKMRALAIL   61 (162)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             5999999999999999999998859599999999999


No 6  
>1j8r_A PAPG adhesin, pyelonephritic adhesin; PAG adhesin, GBO4, structural genomics, PSI, protein structure initiative; HET: NGA GLA GAL BGC; 1.80A {Escherichia coli} SCOP: b.2.3.3 PDB: 1j8s_A
Probab=3.11  E-value=1.7e+02  Score=11.41  Aligned_cols=10  Identities=20%  Similarity=0.311  Sum_probs=5.9

Q ss_pred             HHHCCCCCCC
Q ss_conf             6322200249
Q 537021.9.peg.2   41 HATNNINLSF   50 (50)
Q Consensus        41 Hat~~lnLSF   50 (50)
                      -|||++++||
T Consensus       182 P~~ntl~~sf  191 (196)
T 1j8r_A          182 PRENEMLFLF  191 (196)
T ss_dssp             CCCEEEEEEE
T ss_pred             CCCCEEEEEE
T ss_conf             8787399997


No 7  
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=2.62  E-value=2.9e+02  Score=10.27  Aligned_cols=11  Identities=27%  Similarity=0.534  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHH
Q ss_conf             84103479999
Q 537021.9.peg.2   16 ILKQRKISYIL   26 (50)
Q Consensus        16 i~~k~klsY~L   26 (50)
                      -+|.+.+||..
T Consensus         9 kfgrkaisyav   19 (26)
T 2g9p_A            9 KFGRKAISYAV   19 (26)
T ss_dssp             HHTSHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99199999999


No 8  
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=2.50  E-value=3e+02  Score=10.18  Aligned_cols=18  Identities=11%  Similarity=0.408  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             799999999999841034
Q 537021.9.peg.2    4 PFLIAFLVSISLILKQRK   21 (50)
Q Consensus         4 PFLiAl~~~~~~i~~k~k   21 (50)
                      .|.+|+.+++-.|++.++
T Consensus       198 ali~alvi~iD~i~~e~~  215 (217)
T 1zxu_A          198 AFIASLVVILDDVNREDR  215 (217)
T ss_dssp             HHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHCCCC
T ss_conf             999999999875404144


No 9  
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=2.40  E-value=3.1e+02  Score=10.11  Aligned_cols=13  Identities=31%  Similarity=0.529  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999999
Q 537021.9.peg.2   25 ILLLILFIITILL   37 (50)
Q Consensus        25 ~Lw~iL~iitil~   37 (50)
                      .-|+.+|++||.|
T Consensus        56 ~ww~~~f~~tiv~   68 (311)
T 3mk7_C           56 RWWFLLFIGTLVF   68 (311)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
T ss_conf             8999999999999


No 10 
>1yew_B Particulate methane monooxygenase, A subunit; membrane protein, copper, zinc, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus str}
Probab=2.27  E-value=3.2e+02  Score=10.02  Aligned_cols=23  Identities=26%  Similarity=0.668  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             34799999999999999998863
Q 537021.9.peg.2   20 RKISYILLLILFIITILLFKYHA   42 (50)
Q Consensus        20 ~klsY~Lw~iL~iitil~Fk~Ha   42 (50)
                      |++.|..+.++|.+++=.|.-|.
T Consensus        19 r~~d~~~~~~~f~~~~g~~hih~   41 (247)
T 1yew_B           19 RTIDWMALFVVFFVIVGSYHIHA   41 (247)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEHHHHHHHHHHHHHHHHHHHH
T ss_conf             10168999999999999999999


Done!