Query 537021.9.peg.237_1
Match_columns 50
No_of_seqs 7 out of 9
Neff 1.9
Searched_HMMs 13730
Date Wed May 25 15:58:55 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_237.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j8ra_ b.2.3.3 (A:) PapG adhe 3.1 98 0.0071 11.4 -0.6 10 41-50 182-191 (196)
2 d2pf1a2 g.32.1.1 (A:36-65) Pro 2.7 1.6E+02 0.012 10.3 1.3 13 34-46 4-16 (30)
3 d1h2vc2 a.118.1.14 (C:291-480) 2.6 1.7E+02 0.012 10.3 1.3 33 9-44 101-133 (190)
4 d1qhda2 b.19.1.1 (A:149-332) v 2.4 73 0.0053 12.1 -1.9 12 38-49 166-177 (184)
5 d3bula1 a.46.1.1 (A:651-740) M 2.1 2E+02 0.014 9.9 2.1 13 1-13 63-75 (90)
6 d1i1rb_ a.26.1.1 (B:) Interleu 1.8 2.4E+02 0.018 9.4 1.5 11 20-30 9-19 (167)
7 d1m0da_ c.52.1.17 (A:) Endonuc 1.8 2E+02 0.014 9.9 -0.5 14 16-29 85-98 (129)
8 d1bf5a2 b.2.5.5 (A:317-568) ST 1.7 2.5E+02 0.018 9.3 1.2 17 33-49 153-169 (252)
9 d1g8ea_ a.145.1.1 (A:) Flagell 1.6 2.8E+02 0.02 9.1 1.3 15 18-32 11-25 (98)
10 d1n1jb_ a.22.1.3 (B:) Nuclear 1.6 2.8E+02 0.02 9.1 0.9 24 1-24 33-56 (78)
No 1
>d1j8ra_ b.2.3.3 (A:) PapG adhesin receptor-binding domain {Escherichia coli [TaxId: 562]}
Probab=3.11 E-value=98 Score=11.41 Aligned_cols=10 Identities=20% Similarity=0.311 Sum_probs=5.9
Q ss_pred HHHCCCCCCC
Q ss_conf 6322200249
Q 537021.9.peg.2 41 HATNNINLSF 50 (50)
Q Consensus 41 Hat~~lnLSF 50 (50)
-|||++++||
T Consensus 182 P~~ntl~~sf 191 (196)
T d1j8ra_ 182 PRENEMLFLF 191 (196)
T ss_dssp CCCEEEEEEE
T ss_pred CCCCEEEEEE
T ss_conf 8787399997
No 2
>d2pf1a2 g.32.1.1 (A:36-65) Prothrombin {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.65 E-value=1.6e+02 Score=10.29 Aligned_cols=13 Identities=23% Similarity=0.304 Sum_probs=9.5
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999988632220
Q 537021.9.peg.2 34 TILLFKYHATNNI 46 (50)
Q Consensus 34 til~Fk~Hat~~l 46 (50)
-.||-||.|-++.
T Consensus 4 d~fwakytaces~ 16 (30)
T d2pf1a2 4 DAFWAKYTACESA 16 (30)
T ss_dssp HHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHH
T ss_conf 4899998899873
No 3
>d1h2vc2 a.118.1.14 (C:291-480) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.60 E-value=1.7e+02 Score=10.25 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999984103479999999999999999886322
Q 537021.9.peg.2 9 FLVSISLILKQRKISYILLLILFIITILLFKYHATN 44 (50)
Q Consensus 9 l~~~~~~i~~k~klsY~Lw~iL~iitil~Fk~Hat~ 44 (50)
++-++..++.+-. .+=..++---+-||-||..|
T Consensus 101 ~~~ai~~ly~~l~---~md~e~~~Rf~dWfShHLSN 133 (190)
T d1h2vc2 101 LAQATEMLYMRLD---TMNTTCVDRFINWFSHHLSN 133 (190)
T ss_dssp HHHHHHHHHHTGG---GBCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHC
T ss_conf 9999999998631---17999999999999999606
No 4
>d1qhda2 b.19.1.1 (A:149-332) vp6, the major capsid protein of group A rotavirus {Bovine rotavirus [TaxId: 10927]}
Probab=2.43 E-value=73 Score=12.06 Aligned_cols=12 Identities=42% Similarity=0.617 Sum_probs=7.2
Q ss_pred HHHHHHCCCCCC
Q ss_conf 988632220024
Q 537021.9.peg.2 38 FKYHATNNINLS 49 (50)
Q Consensus 38 Fk~Hat~~lnLS 49 (50)
|.|||+--|+||
T Consensus 166 f~~~A~~~lTL~ 177 (184)
T d1qhda2 166 FEHHATVGLTLR 177 (184)
T ss_dssp CCSEEEEEEEEE
T ss_pred CCCEEEEEEEEE
T ss_conf 653026899998
No 5
>d3bula1 a.46.1.1 (A:651-740) Methionine synthase domain {Escherichia coli [TaxId: 562]}
Probab=2.13 E-value=2e+02 Score=9.86 Aligned_cols=13 Identities=31% Similarity=0.521 Sum_probs=7.6
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 9467999999999
Q 537021.9.peg.2 1 MFLPFLIAFLVSI 13 (50)
Q Consensus 1 MFlPFLiAl~~~~ 13 (50)
||+|.++.-.-++
T Consensus 63 ~flP~vl~sA~aM 75 (90)
T d3bula1 63 MFLPQVVKSARVM 75 (90)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 5099999999999
No 6
>d1i1rb_ a.26.1.1 (B:) Interleukin-6 {Human herpesvirus 8, Kaposi's sarcoma herpes-virus [TaxId: 37296]}
Probab=1.80 E-value=2.4e+02 Score=9.43 Aligned_cols=11 Identities=18% Similarity=0.594 Sum_probs=6.0
Q ss_pred HHHHHHHHHHH
Q ss_conf 34799999999
Q 537021.9.peg.2 20 RKISYILLLIL 30 (50)
Q Consensus 20 ~klsY~Lw~iL 30 (50)
+.+.|+||-|-
T Consensus 9 ~~i~~~l~~i~ 19 (167)
T d1i1rb_ 9 QRLNWMLWVID 19 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 7
>d1m0da_ c.52.1.17 (A:) Endonuclease I (Holliday junction resolvase) {Bacteriophage T7 [TaxId: 10760]}
Probab=1.75 E-value=2e+02 Score=9.88 Aligned_cols=14 Identities=21% Similarity=0.100 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 84103479999999
Q 537021.9.peg.2 16 ILKQRKISYILLLI 29 (50)
Q Consensus 16 i~~k~klsY~Lw~i 29 (50)
|.++.|-||.-|.-
T Consensus 85 i~K~sktTYa~WCe 98 (129)
T d1m0da_ 85 LYKGSPTSYGEFCE 98 (129)
T ss_dssp SSTTCSCBHHHHHH
T ss_pred CCCCCCCCHHHHHH
T ss_conf 22688674999998
No 8
>d1bf5a2 b.2.5.5 (A:317-568) STAT-1, DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.75 E-value=2.5e+02 Score=9.34 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHCCCCCC
Q ss_conf 99999988632220024
Q 537021.9.peg.2 33 ITILLFKYHATNNINLS 49 (50)
Q Consensus 33 itil~Fk~Hat~~lnLS 49 (50)
-||+|++.-+.+.-|+.
T Consensus 153 ATIlWdNafs~~~rnl~ 169 (252)
T d1bf5a2 153 ASILWYNMLVAEPRNLS 169 (252)
T ss_dssp HHHHHHHHHCCSSCCTT
T ss_pred HHHEEHHHHCCCCCCCC
T ss_conf 41201233048876778
No 9
>d1g8ea_ a.145.1.1 (A:) Flagellar transcriptional activator FlhD {Escherichia coli [TaxId: 562]}
Probab=1.60 E-value=2.8e+02 Score=9.12 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 103479999999999
Q 537021.9.peg.2 18 KQRKISYILLLILFI 32 (50)
Q Consensus 18 ~k~klsY~Lw~iL~i 32 (50)
+.-++||.+.+--.|
T Consensus 11 ~e~NLsYLlLAQrli 25 (98)
T d1g8ea_ 11 YDINLSYLLLAQRLI 25 (98)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 998499999999998
No 10
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.59 E-value=2.8e+02 Score=9.11 Aligned_cols=24 Identities=17% Similarity=0.034 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 946799999999999841034799
Q 537021.9.peg.2 1 MFLPFLIAFLVSISLILKQRKISY 24 (50)
Q Consensus 1 MFlPFLiAl~~~~~~i~~k~klsY 24 (50)
||.-+|..-......-.++|.++|
T Consensus 33 ~Fi~~l~~~A~~~a~~~~rkti~~ 56 (78)
T d1n1jb_ 33 IFITELTLRAWIHTEDNKRRTLQR 56 (78)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 999999999999999748881789
Done!