RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.237_1
         (50 letters)



>gnl|CDD|144140 pfam00434, VP7, Glycoprotein VP7. 
          Length = 326

 Score = 26.7 bits (59), Expect = 1.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 2  FLPFLIAF-LVSISLILKQRKISYILLLILFIITILLFKYHATN-NINL 48
           L FLI+  L++  L    R + YI+   L +I +L     A N  INL
Sbjct: 9  ILTFLISIILLNYILKTITRIMDYIIYRFLLVIVVLSPFSSAQNYGINL 57


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.344    0.156    0.433 

Gapped
Lambda     K      H
   0.267   0.0736    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 569,933
Number of extensions: 23081
Number of successful extensions: 620
Number of sequences better than 10.0: 1
Number of HSP's gapped: 605
Number of HSP's successfully gapped: 107
Length of query: 50
Length of database: 6,263,737
Length adjustment: 23
Effective length of query: 27
Effective length of database: 5,766,730
Effective search space: 155701710
Effective search space used: 155701710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 51 (23.4 bits)