RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.237_1 (50 letters) >gnl|CDD|185090 PRK15136, PRK15136, multidrug efflux system protein EmrA; Provisional. Length = 390 Score = 25.0 bits (55), Expect = 4.5 Identities = 8/16 (50%), Positives = 12/16 (75%) Query: 18 KQRKISYILLLILFII 33 +RK + +LL +LFII Sbjct: 18 GKRKRALLLLTLLFII 33 >gnl|CDD|184397 PRK13922, PRK13922, rod shape-determining protein MreC; Provisional. Length = 276 Score = 23.8 bits (52), Expect = 9.6 Identities = 5/35 (14%), Positives = 19/35 (54%) Query: 2 FLPFLIAFLVSISLILKQRKISYILLLILFIITIL 36 L ++ L++++L+L R++ + + + ++ Sbjct: 13 LLLLILLLLLALALLLADRRLGSLSPVRQVVGDVV 47 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.344 0.156 0.433 Gapped Lambda K H 0.267 0.0744 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 755,012 Number of extensions: 33819 Number of successful extensions: 611 Number of sequences better than 10.0: 1 Number of HSP's gapped: 599 Number of HSP's successfully gapped: 127 Length of query: 50 Length of database: 5,994,473 Length adjustment: 23 Effective length of query: 27 Effective length of database: 5,497,489 Effective search space: 148432203 Effective search space used: 148432203 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 38 (21.5 bits) S2: 50 (23.0 bits)