Query 537021.9.peg.248_1
Match_columns 45
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed May 25 16:01:29 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_248.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f3k_A Omega-conotoxin txvii; 7.2 75 0.0032 14.8 -0.0 19 26-44 8-26 (26)
2 1b4b_A Arginine repressor; cor 6.2 1.6E+02 0.0069 13.1 1.3 21 21-41 27-47 (71)
3 1avo_A 11S regulator; proteaso 4.7 1.7E+02 0.0074 13.0 0.6 23 6-28 20-43 (60)
4 2b3y_A Iron-responsive element 4.1 2.6E+02 0.011 12.2 1.9 37 6-43 470-506 (888)
5 3nrl_A Uncharacterized protein 3.9 2.1E+02 0.0089 12.6 0.5 8 36-43 30-37 (81)
6 1opz_A Potential copper-transp 3.9 1.5E+02 0.0062 13.4 -0.3 7 36-42 14-20 (76)
7 2hcz_X Beta-expansin 1A; domai 3.7 2E+02 0.0086 12.7 0.3 8 36-43 67-74 (245)
8 1yjr_A Copper-transporting ATP 3.6 1.5E+02 0.0063 13.3 -0.4 7 36-42 12-18 (75)
9 2xmm_A SSR2857 protein, ATX1; 3.6 1.3E+02 0.0056 13.6 -0.7 7 36-42 9-15 (64)
10 2aj0_A Probable cadmium-transp 3.4 1.5E+02 0.0063 13.3 -0.6 7 36-42 11-17 (71)
No 1
>1f3k_A Omega-conotoxin txvii; cystine knot motif, triple-stranded antiparallel beta-sheet, L-type calcium channel blocker; NMR {Synthetic} SCOP: g.3.6.1
Probab=7.20 E-value=75 Score=14.84 Aligned_cols=19 Identities=37% Similarity=0.899 Sum_probs=14.8
Q ss_pred HHHCCCCEEEEECCCEEEE
Q ss_conf 5312663211202221341
Q 537021.9.peg.2 26 LDSLSFPCFIGISCGACIF 44 (45)
Q Consensus 26 ldslsfpcfigiscgacif 44 (45)
-|..|..|-.||--|.|.+
T Consensus 8 cdvfsldcctgiclgvcmw 26 (26)
T 1f3k_A 8 CDVFSLDCCTGICLGVCMW 26 (26)
T ss_dssp CCSSSCCSTTSCCSSSCCC
T ss_pred CCEEEEECCCCEEEEEEEC
T ss_conf 4677770334237778729
No 2
>1b4b_A Arginine repressor; core, oligomerization domain, helix turn helix; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=6.24 E-value=1.6e+02 Score=13.14 Aligned_cols=21 Identities=33% Similarity=0.751 Sum_probs=17.7
Q ss_pred HHHHHHHHCCCCEEEEECCCE
Q ss_conf 676565312663211202221
Q 537021.9.peg.2 21 FVGNFLDSLSFPCFIGISCGA 41 (45)
Q Consensus 21 fvgnfldslsfpcfigiscga 41 (45)
-++..+|.+.+|...|.-+|.
T Consensus 27 ~va~~iD~~~~~~i~GTIAGd 47 (71)
T 1b4b_A 27 AIGVLLDNLDWDEIVGTICGD 47 (71)
T ss_dssp HHHHHHHHHCCTTEEEEEECS
T ss_pred HHHHHHHCCCCCCEEEEEECC
T ss_conf 999999638999708998049
No 3
>1avo_A 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=4.71 E-value=1.7e+02 Score=12.99 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=17.0
Q ss_pred ECCCCHHHHHHHHHHHH-HHHHHH
Q ss_conf 10121355667788767-656531
Q 537021.9.peg.2 6 LQAGSLVATGFLEKIFV-GNFLDS 28 (45)
Q Consensus 6 lqagslvatgflekifv-gnflds 28 (45)
-+|-.|+.+.|-+||-- .++|.+
T Consensus 20 ~eAE~Lv~~ffP~KI~eLd~lLk~ 43 (60)
T 1avo_A 20 TKTENLLGSYFPKKISELDAFLKE 43 (60)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999996727999999998665
No 4
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 2ipy_A
Probab=4.06 E-value=2.6e+02 Score=12.15 Aligned_cols=37 Identities=38% Similarity=0.622 Sum_probs=25.6
Q ss_pred ECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEE
Q ss_conf 10121355667788767656531266321120222134
Q 537021.9.peg.2 6 LQAGSLVATGFLEKIFVGNFLDSLSFPCFIGISCGACI 43 (45)
Q Consensus 6 lqagslvatgflekifvgnfldslsfpcfigiscgaci 43 (45)
+..||-+.+-.+++-=+-..|+.+-|- ..+-.||.||
T Consensus 470 v~PGS~~V~~~l~~~Gl~~~L~~aGf~-i~~~GC~~Ci 506 (888)
T 2b3y_A 470 LSPGSGVVTYYLQESGVMPYLSQLGFD-VVGYGCMTCI 506 (888)
T ss_dssp ECCSSHHHHHHHHHTSCHHHHHHTTCC-BCCSSCGGGG
T ss_pred EECCHHHHHHHHHHCCCHHHHHHCCEE-EECCCCCCCC
T ss_conf 835849999999987737779855939-9278651431
No 5
>3nrl_A Uncharacterized protein rumgna_01417; beta protein, structural genomics, PSI-2, protein structure initiative; 1.90A {Ruminococcus gnavus}
Probab=3.90 E-value=2.1e+02 Score=12.57 Aligned_cols=8 Identities=50% Similarity=1.655 Sum_probs=0.0
Q ss_pred EECCCEEE
Q ss_conf 20222134
Q 537021.9.peg.2 36 GISCGACI 43 (45)
Q Consensus 36 giscgaci 43 (45)
|+.||.|.
T Consensus 30 GlHCGe~l 37 (81)
T 3nrl_A 30 GLHCGECF 37 (81)
T ss_dssp CCCTTCEE
T ss_pred CCCCCCEE
T ss_conf 71357679
No 6
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=3.87 E-value=1.5e+02 Score=13.37 Aligned_cols=7 Identities=57% Similarity=1.735 Sum_probs=0.0
Q ss_pred EECCCEE
Q ss_conf 2022213
Q 537021.9.peg.2 36 GISCGAC 42 (45)
Q Consensus 36 giscgac 42 (45)
|++|+.|
T Consensus 14 Gm~C~~C 20 (76)
T 1opz_A 14 GMTCAAC 20 (76)
T ss_dssp SCCSTTH
T ss_pred CCCHHHH
T ss_conf 9313999
No 7
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin like beta-sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays}
Probab=3.70 E-value=2e+02 Score=12.65 Aligned_cols=8 Identities=50% Similarity=1.452 Sum_probs=0.0
Q ss_pred EECCCEEE
Q ss_conf 20222134
Q 537021.9.peg.2 36 GISCGACI 43 (45)
Q Consensus 36 giscgaci 43 (45)
|.+||+|.
T Consensus 67 g~~CG~Cy 74 (245)
T 2hcz_X 67 GKGCGSCY 74 (245)
T ss_dssp GTSTTCEE
T ss_pred CCCCCCCE
T ss_conf 88776687
No 8
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=3.61 E-value=1.5e+02 Score=13.31 Aligned_cols=7 Identities=43% Similarity=1.673 Sum_probs=0.0
Q ss_pred EECCCEE
Q ss_conf 2022213
Q 537021.9.peg.2 36 GISCGAC 42 (45)
Q Consensus 36 giscgac 42 (45)
|++|+.|
T Consensus 12 Gm~C~~C 18 (75)
T 1yjr_A 12 GMTCASC 18 (75)
T ss_dssp TCCTTTH
T ss_pred CCCCHHH
T ss_conf 9661899
No 9
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=3.58 E-value=1.3e+02 Score=13.58 Aligned_cols=7 Identities=57% Similarity=1.360 Sum_probs=0.0
Q ss_pred EECCCEE
Q ss_conf 2022213
Q 537021.9.peg.2 36 GISCGAC 42 (45)
Q Consensus 36 giscgac 42 (45)
|++|+.|
T Consensus 9 gM~C~~C 15 (64)
T 2xmm_A 9 TIACEAC 15 (64)
T ss_dssp TCCSHHH
T ss_pred CCCCHHH
T ss_conf 9004315
No 10
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A
Probab=3.45 E-value=1.5e+02 Score=13.35 Aligned_cols=7 Identities=57% Similarity=1.578 Sum_probs=0.0
Q ss_pred EECCCEE
Q ss_conf 2022213
Q 537021.9.peg.2 36 GISCGAC 42 (45)
Q Consensus 36 giscgac 42 (45)
|++|+.|
T Consensus 11 GM~C~~C 17 (71)
T 2aj0_A 11 GLSCTNC 17 (71)
T ss_dssp SCCCHHH
T ss_pred CCCCHHH
T ss_conf 9463899
Done!