Query 537021.9.peg.252_1
Match_columns 45
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed May 25 16:00:50 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_252.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2inc_A Toluene, O-xylene mono 6.9 1.7E+02 0.005 14.4 0.8 24 7-30 36-59 (116)
2 >2inp_A Phenol hydroxylase com 5.9 2E+02 0.0061 14.0 0.9 25 6-30 32-56 (145)
3 >1d2v_C Myeloperoxidase; heme- 4.0 3.2E+02 0.0094 13.2 0.7 37 2-38 79-117 (144)
4 >1lfd_A Ralgds; RAL, effector 4.0 2E+02 0.0058 14.1 -0.4 34 12-45 54-87 (87)
5 >2g29_A Nitrate transport prot 3.9 2.7E+02 0.0079 13.5 0.3 13 2-14 10-22 (36)
6 >2i49_A Bicarbonate transporte 3.8 2.6E+02 0.0077 13.5 0.2 13 2-14 9-21 (33)
7 >1yvr_A RO autoantigen, 60-kDa 3.2 3.7E+02 0.011 12.9 0.5 11 12-22 6-16 (89)
8 >1a1d_A RNA polymerase; RPB8, 3.1 5.2E+02 0.015 12.2 1.2 17 29-45 130-146 (146)
9 >1dmu_A BGLI restriction endon 2.9 3.8E+02 0.011 12.8 0.3 20 17-36 218-237 (299)
10 >2hje_A Autoinducer 2 sensor k 2.5 6.1E+02 0.018 11.9 0.9 11 35-45 51-61 (84)
No 1
>>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} (A:81-196)
Probab=6.86 E-value=1.7e+02 Score=14.38 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHE
Q ss_conf 114865620201111000024300
Q 537021.9.peg.2 7 TVFSPEVRNMGKMRSLTDNRCSRT 30 (45)
Q Consensus 7 tvfspevrnmgkmrsltdnrcsrt 30 (45)
..-.||.||+..|.+|...|-+.+
T Consensus 36 ~~~~~~~R~~~~~q~lDEiRH~q~ 59 (116)
T 2inc_A 36 FAKAPGNRNMATFGMMDENRHGQI 59 (116)
T ss_dssp HCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 567888899999999999989999
No 2
>>2inp_A Phenol hydroxylase component PHN; DIIRON, four-helix bundle, regulatory protein, oxidoreductase; 2.30A {Pseudomonas stutzeri} PDB: 2inn_A (A:84-180,A:340-347,A:443-482)
Probab=5.92 E-value=2e+02 Score=14.00 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=19.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHE
Q ss_conf 0114865620201111000024300
Q 537021.9.peg.2 6 STVFSPEVRNMGKMRSLTDNRCSRT 30 (45)
Q Consensus 6 stvfspevrnmgkmrsltdnrcsrt 30 (45)
...-.|+.||+..|.+|-..|-+.+
T Consensus 32 R~~~g~g~Rn~~~mQ~lDEiRH~Q~ 56 (145)
T 2inp_A 32 RQFSGAGARVACQMQAIDELRHSQT 56 (145)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 6468879999999998898878999
No 3
>>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase- bromide complex; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} (C:105-185,C:404-466)
Probab=3.98 E-value=3.2e+02 Score=13.16 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=23.1
Q ss_pred CCHHCCCCCHHHHHHHHHHHHHHHHHHHE--EHHHEEEE
Q ss_conf 40010114865620201111000024300--01011555
Q 537021.9.peg.2 2 EFIDSTVFSPEVRNMGKMRSLTDNRCSRT--ISRIQLDL 38 (45)
Q Consensus 2 efidstvfspevrnmgkmrsltdnrcsrt--isriqldl 38 (45)
||+..-+|+|+-..-=+--||.---|.-+ |.+||.+.
T Consensus 79 e~L~pg~Ft~~QL~eIrk~sLariiCdn~d~i~~vq~~~ 117 (144)
T 1d2v_C 79 DYLNEGVFSMQQRQALAQISLPRIICDNTGITTVSKNNI 117 (144)
T ss_dssp TTHSTTTSCHHHHHHHTTCCHHHHHHHHSSCCEEECSCT
T ss_pred HHHCCCCCCHHHHHHHHHCCHHHHHHCCCCCCCCCCCCC
T ss_conf 878799899999999996689998760799853367664
No 4
>>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} (A:)
Probab=3.95 E-value=2e+02 Score=14.08 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHEEHHHEEEEEEEEEEC
Q ss_conf 5620201111000024300010115556688739
Q 537021.9.peg.2 12 EVRNMGKMRSLTDNRCSRTISRIQLDLRFLLIRR 45 (45)
Q Consensus 12 evrnmgkmrsltdnrcsrtisriqldlrfllirr 45 (45)
+|-..|+-|-|.|+-|--.+-..--.++|.|-||
T Consensus 54 qV~~~~~ErvL~d~e~pl~~~~~w~~~~F~LRrr 87 (87)
T 1lfd_A 54 QIISEDHKLKIPENANVFYAMNSAANYDFILKKR 87 (87)
T ss_dssp EESSSSCEEECCTTSBHHHHSCTTSCCEEEEEEC
T ss_pred EECCCCCEEECCCCCCEEEEECCCCCCCEEEECC
T ss_conf 9848997796479971789964776754587249
No 5
>>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP} (A:382-417)
Probab=3.87 E-value=2.7e+02 Score=13.49 Aligned_cols=13 Identities=38% Similarity=0.718 Sum_probs=10.2
Q ss_pred CCHHCCCCCHHHH
Q ss_conf 4001011486562
Q 537021.9.peg.2 2 EFIDSTVFSPEVR 14 (45)
Q Consensus 2 efidstvfspevr 14 (45)
.|.|..+|.||--
T Consensus 10 ~FFDG~~FDP~nP 22 (36)
T 2g29_A 10 TFFDGITFDPENP 22 (36)
T ss_dssp EBTTSCEECTTCH
T ss_pred CCCCCCCCCCCCH
T ss_conf 2158885187069
No 6
>>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic solute-binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A (A:397-429)
Probab=3.84 E-value=2.6e+02 Score=13.54 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=10.1
Q ss_pred CCHHCCCCCHHHH
Q ss_conf 4001011486562
Q 537021.9.peg.2 2 EFIDSTVFSPEVR 14 (45)
Q Consensus 2 efidstvfspevr 14 (45)
.|.|..+|.||--
T Consensus 9 ~FFDG~~FDP~nP 21 (33)
T 2i49_A 9 TFFDGITFDPANP 21 (33)
T ss_dssp ECTTSCEECTTCH
T ss_pred CCCCCCCCCCCCH
T ss_conf 0267882484249
No 7
>>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} (A:276-364)
Probab=3.19 E-value=3.7e+02 Score=12.85 Aligned_cols=11 Identities=45% Similarity=0.646 Sum_probs=8.1
Q ss_pred HHHHHHHHHHH
Q ss_conf 56202011110
Q 537021.9.peg.2 12 EVRNMGKMRSL 22 (45)
Q Consensus 12 evrnmgkmrsl 22 (45)
-.||+|+|-++
T Consensus 6 lLRNLgrlt~~ 16 (89)
T 1yvr_A 6 LLRNLGKMTAD 16 (89)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
T ss_conf 99867766452
No 8
>>1a1d_A RNA polymerase; RPB8, OB fold, eukaryotic, yeast, nucleotidyltransferase; NMR {Saccharomyces cerevisiae} (A:)
Probab=3.06 E-value=5.2e+02 Score=12.21 Aligned_cols=17 Identities=35% Similarity=0.735 Sum_probs=12.5
Q ss_pred HEEHHHEEEEEEEEEEC
Q ss_conf 00010115556688739
Q 537021.9.peg.2 29 RTISRIQLDLRFLLIRR 45 (45)
Q Consensus 29 rtisriqldlrfllirr 45 (45)
+.++.+.+|--|||||+
T Consensus 130 ~~l~~l~~d~vYLLirk 146 (146)
T 1a1d_A 130 RNLNNLKQENAYLLIRR 146 (146)
T ss_pred HHCCCCCCCEEEEEECC
T ss_conf 88666662449999809
No 9
>>1dmu_A BGLI restriction endonuclease; protein-DNA complex, active site calcium IONS, alpha/beta structure; HET: DNA; 2.20A {Bacillus subtilis} (A:)
Probab=2.91 E-value=3.8e+02 Score=12.83 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHEEHHHEE
Q ss_conf 01111000024300010115
Q 537021.9.peg.2 17 GKMRSLTDNRCSRTISRIQL 36 (45)
Q Consensus 17 gkmrsltdnrcsrtisriql 36 (45)
-.|+|||.+--...+++|.+
T Consensus 218 Y~m~slt~~d~gqpl~~i~~ 237 (299)
T 1dmu_A 218 YAMRSLTKGDTGQSLYKIKL 237 (299)
T ss_dssp EEEGGGSTTCCCEEEEEEEE
T ss_pred HHHHHCCCCCCCCEEEEEEE
T ss_conf 33331025778835567899
No 10
>>2hje_A Autoinducer 2 sensor kinase/phosphatase LUXQ; PER/ARNT/simple-minded (PAS) fold, autoinducer-2 (AI-2), quorum sensing, histidine sensor kinase; 1.70A {Vibrio harveyi} (A:61-144)
Probab=2.47 E-value=6.1e+02 Score=11.90 Aligned_cols=11 Identities=36% Similarity=0.754 Sum_probs=0.0
Q ss_pred EEEEEEEEEEC
Q ss_conf 15556688739
Q 537021.9.peg.2 35 QLDLRFLLIRR 45 (45)
Q Consensus 35 qldlrfllirr 45 (45)
++..|.||+||
T Consensus 51 ~~g~~hlLvRR 61 (84)
T 2hje_A 51 SIGSRHMLVRR 61 (84)
T ss_dssp TTEEEEEEEEE
T ss_pred CCCCEEEEEEE
T ss_conf 88735899983
Done!