Query 537021.9.peg.252_1 Match_columns 45 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 16:18:43 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_252.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1cw0_A Protein (DNA mismatch e 3.4 2.7E+02 0.012 12.8 0.7 16 6-21 1-18 (155) 2 1dmu_A BGLI restriction endonu 2.7 2.9E+02 0.012 12.6 0.3 20 17-36 218-237 (299) 3 3bdm_F Proteasome component C1 1.8 4.1E+02 0.017 12.0 -0.0 10 5-14 10-19 (287) 4 1xn8_A Hypothetical protein YQ 1.8 4.9E+02 0.02 11.7 0.3 12 3-15 9-20 (131) 5 2wlv_A GAG polyprotein, HIV-2 1.7 3.5E+02 0.015 12.3 -0.6 15 3-17 25-39 (144) 6 3dxe_B Amyloid beta A4 protein 1.7 6E+02 0.025 11.2 0.7 14 8-21 6-19 (35) 7 3h0g_H DNA-directed RNA polyme 1.5 6.1E+02 0.026 11.2 0.4 16 30-45 110-125 (125) 8 2l27_B Peptide agonist; CRF, E 1.4 1.2E+02 0.0049 14.4 -3.6 11 34-44 3-13 (38) 9 1pvz_A K+ toxin-like peptide; 1.4 5.7E+02 0.024 11.3 -0.0 11 19-29 5-15 (31) 10 2pwo_A GAG-POL polyprotein (PR 1.3 5E+02 0.021 11.6 -0.5 16 1-16 24-39 (146) No 1 >1cw0_A Protein (DNA mismatch endonuclease); protein-DNA complex, intercalation, zinc, hydrolase/DNA; HET: DNA; 2.30A {Escherichia coli} SCOP: c.52.1.15 Probab=3.37 E-value=2.7e+02 Score=12.76 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=11.3 Q ss_pred CCCCCHHHH--HHHHHHH Q ss_conf 011486562--0201111 Q 537021.9.peg.2 6 STVFSPEVR--NMGKMRS 21 (45) Q Consensus 6 stvfspevr--nmgkmrs 21 (45) |-+|+|+.| ||-+.|+ T Consensus 1 ~D~~~~~~Rs~~M~~ir~ 18 (155) T 1cw0_A 1 ADVHDKATRSKNMRAIAT 18 (155) T ss_dssp CCSSCHHHHHHHHHTCCS T ss_pred CCCCCHHHHHHHHHHHHC T ss_conf 984798999999987547 No 2 >1dmu_A BGLI restriction endonuclease; protein-DNA complex, active site calcium IONS, alpha/beta structure, A:A mismatch, hydrolase/DNA complex; HET: DNA; 2.20A {Bacillus subtilis} SCOP: c.52.1.4 Probab=2.68 E-value=2.9e+02 Score=12.64 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=12.5 Q ss_pred HHHHHHHHHHHHHEEHHHEE Q ss_conf 01111000024300010115 Q 537021.9.peg.2 17 GKMRSLTDNRCSRTISRIQL 36 (45) Q Consensus 17 gkmrsltdnrcsrtisriql 36 (45) -.|+|||.+--...+++|.+ T Consensus 218 Y~m~slt~~d~gqpl~~i~~ 237 (299) T 1dmu_A 218 YAMRSLTKGDTGQSLYKIKL 237 (299) T ss_dssp EEEGGGSTTCCCEEEEEEEE T ss_pred HHHHHCCCCCCCCEEEEEEE T ss_conf 33331025778835567899 No 3 >3bdm_F Proteasome component C1; ubiquitin, proteolysis, pathogen, virulence factor, cytoplasm, hydrolase, nucleus, protease; HET: GDT; 2.70A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_G* 2zcy_F* 1z7q_G Probab=1.84 E-value=4.1e+02 Score=12.00 Aligned_cols=10 Identities=50% Similarity=0.906 Sum_probs=6.0 Q ss_pred HCCCCCHHHH Q ss_conf 1011486562 Q 537021.9.peg.2 5 DSTVFSPEVR 14 (45) Q Consensus 5 dstvfspevr 14 (45) +.|+|||+-| T Consensus 10 ~~t~fSP~Gr 19 (287) T 3bdm_F 10 SNSVFSPDGR 19 (287) T ss_dssp STTCCCTTSC T ss_pred CCCEECCCCE T ss_conf 9863999981 No 4 >1xn8_A Hypothetical protein YQBG; alpha, GFT structural genomics, protein structure initiative, PSI, NESG, SR215; NMR {Bacillus subtilis} SCOP: a.229.1.1 PDB: 1zts_A Probab=1.78 E-value=4.9e+02 Score=11.66 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=4.8 Q ss_pred CHHCCCCCHHHHH Q ss_conf 0010114865620 Q 537021.9.peg.2 3 FIDSTVFSPEVRN 15 (45) Q Consensus 3 fidstvfspevrn 15 (45) .|+-||| |||+| T Consensus 9 li~Ytv~-~~VK~ 20 (131) T 1xn8_A 9 LKSYSVF-ESVKT 20 (131) T ss_dssp HHHHCCC-HHHHH T ss_pred HHHHHHH-HHHHC T ss_conf 8876626-98863 No 5 >2wlv_A GAG polyprotein, HIV-2 capsid,; virus protein, RNA-binding, capsid protein, viral nucleoprotein, AIDS; 1.25A {Human immunodeficiency virus type 2} PDB: 2x82_A Probab=1.70 E-value=3.5e+02 Score=12.30 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=10.4 Q ss_pred CHHCCCCCHHHHHHH Q ss_conf 001011486562020 Q 537021.9.peg.2 3 FIDSTVFSPEVRNMG 17 (45) Q Consensus 3 fidstvfspevrnmg 17 (45) .|....|||||-.|= T Consensus 25 vvEEk~fspEvipmF 39 (144) T 2wlv_A 25 LVEEKKFGAEVVPGF 39 (144) T ss_dssp HHHHHTSCTTHHHHH T ss_pred HHHHCCCCHHHHHHH T ss_conf 999627884676778 No 6 >3dxe_B Amyloid beta A4 protein; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} PDB: 3dxc_B 3dxd_B 2roz_A Probab=1.67 E-value=6e+02 Score=11.24 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=10.7 Q ss_pred CCCHHHHHHHHHHH Q ss_conf 14865620201111 Q 537021.9.peg.2 8 VFSPEVRNMGKMRS 21 (45) Q Consensus 8 vfspevrnmgkmrs 21 (45) ..+||-|...+|.. T Consensus 6 ~~tpEeRH~a~MQ~ 19 (35) T 3dxe_B 6 AVAPEERHLSKMQQ 19 (35) T ss_dssp -CCHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHH T ss_conf 66889999999986 No 7 >3h0g_H DNA-directed RNA polymerases I, II, and III subunit rpabc3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Probab=1.50 E-value=6.1e+02 Score=11.22 Aligned_cols=16 Identities=44% Similarity=0.808 Sum_probs=8.8 Q ss_pred EEHHHEEEEEEEEEEC Q ss_conf 0010115556688739 Q 537021.9.peg.2 30 TISRIQLDLRFLLIRR 45 (45) Q Consensus 30 tisriqldlrfllirr 45 (45) .++.+++|--|||||+ T Consensus 110 ~L~~~~~d~vYLLirK 125 (125) T 3h0g_H 110 KLYRLSLDHVYLLLRR 125 (125) T ss_dssp SCSCCCCSCCCEEECC T ss_pred HCCCCCCCEEEEEEEC T ss_conf 8877751449999939 No 8 >2l27_B Peptide agonist; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens} Probab=1.37 E-value=1.2e+02 Score=14.40 Aligned_cols=11 Identities=64% Similarity=0.975 Sum_probs=0.0 Q ss_pred HEEEEEEEEEE Q ss_conf 11555668873 Q 537021.9.peg.2 34 IQLDLRFLLIR 44 (45) Q Consensus 34 iqldlrfllir 44 (45) |.+||.|-|.| T Consensus 3 iSlDLTFHlLR 13 (38) T 2l27_B 3 ISLDLTFNLLR 13 (38) T ss_dssp CCSHHHHHHHH T ss_pred CCHHHHHHHHH T ss_conf 20567899999 No 9 >1pvz_A K+ toxin-like peptide; alpha/beta scaffold; NMR {Mesobuthus martensii} SCOP: g.3.7.2 Probab=1.37 E-value=5.7e+02 Score=11.35 Aligned_cols=11 Identities=45% Similarity=0.881 Sum_probs=0.0 Q ss_pred HHHHHHHHHHH Q ss_conf 11100002430 Q 537021.9.peg.2 19 MRSLTDNRCSR 29 (45) Q Consensus 19 mrsltdnrcsr 29 (45) .|-.||..|+| T Consensus 5 vrc~td~dc~r 15 (31) T 1pvz_A 5 IKCATDADCSR 15 (31) T ss_dssp EECSSHHHHHH T ss_pred EEEECCHHHHH T ss_conf 88603420554 No 10 >2pwo_A GAG-POL polyprotein (PR160GAG-POL); viral capsid, HIV-1, anti-viral, viral protein; 1.45A {Human immunodeficiency virus 1} PDB: 2pwm_A 2gon_A 1afv_A 1gwp_A 2pxr_C 2gol_B 1m9c_C 2x83_A 2x2d_D* 1ak4_C 2jpr_A* 1m9e_C 1m9y_C 1m9f_C 1m9x_C 1m9d_C 1fgl_B Probab=1.26 E-value=5e+02 Score=11.60 Aligned_cols=16 Identities=38% Similarity=0.706 Sum_probs=0.0 Q ss_pred CCCHHCCCCCHHHHHH Q ss_conf 9400101148656202 Q 537021.9.peg.2 1 MEFIDSTVFSPEVRNM 16 (45) Q Consensus 1 mefidstvfspevrnm 16 (45) ++.|....|||||-.| T Consensus 24 VKvveEk~f~pEvIpm 39 (146) T 2pwo_A 24 VKVVEEKAFSPEVIPM 39 (146) T ss_dssp HHHHHHHTTSTTHHHH T ss_pred HHHHHHCCCCCCHHHH T ss_conf 9999860578212068 Done!