Query 537021.9.peg.252_1 Match_columns 45 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed May 25 16:10:04 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_252.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1dmua_ c.52.1.4 (A:) Restrict 2.7 1.7E+02 0.012 12.6 0.3 20 17-36 218-237 (299) 2 d1rm6b2 d.145.1.3 (B:1-216) 4- 2.3 2.3E+02 0.016 12.1 0.5 15 6-20 99-113 (216) 3 d2vxfa1 b.38.1.5 (A:6-85) LSM1 1.7 1.5E+02 0.011 12.8 -1.2 15 3-17 26-40 (80) 4 d1xn8a_ a.229.1.1 (A:) Hypothe 1.6 3.2E+02 0.024 11.4 0.3 12 3-15 9-20 (131) 5 d1ffvc2 d.145.1.3 (C:1-177) Ca 1.5 3.7E+02 0.027 11.1 0.8 21 6-29 99-119 (177) 6 d1vcva1 c.1.10.1 (A:1-226) Deo 1.5 3E+02 0.022 11.5 0.0 12 2-13 3-14 (226) 7 d1jroa4 d.145.1.3 (A:179-345) 1.5 3.9E+02 0.028 11.0 0.7 21 6-29 90-110 (167) 8 d1rutx3 g.39.1.3 (X:83-113) LI 1.4 4E+02 0.029 11.0 1.1 15 25-39 6-20 (31) 9 d1u3em1 d.4.1.3 (M:1-105) Intr 1.4 2.4E+02 0.017 12.0 -0.8 27 1-27 1-29 (105) 10 d1pvza_ g.3.7.2 (A:) K+ toxin- 1.4 3.3E+02 0.024 11.3 -0.0 11 19-29 5-15 (31) No 1 >d1dmua_ c.52.1.4 (A:) Restriction endonuclease BglI {Bacillus subtilis [TaxId: 1423]} Probab=2.68 E-value=1.7e+02 Score=12.64 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=12.5 Q ss_pred HHHHHHHHHHHHHEEHHHEE Q ss_conf 01111000024300010115 Q 537021.9.peg.2 17 GKMRSLTDNRCSRTISRIQL 36 (45) Q Consensus 17 gkmrsltdnrcsrtisriql 36 (45) -.|+|||.+--...+++|.+ T Consensus 218 Y~m~slt~~d~gqpl~~i~~ 237 (299) T d1dmua_ 218 YAMRSLTKGDTGQSLYKIKL 237 (299) T ss_dssp EEEGGGSTTCCCEEEEEEEE T ss_pred HHHHHCCCCCCCCEEEEEEE T ss_conf 33331025778835567899 No 2 >d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Probab=2.31 E-value=2.3e+02 Score=12.08 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=11.5 Q ss_pred CCCCCHHHHHHHHHH Q ss_conf 011486562020111 Q 537021.9.peg.2 6 STVFSPEVRNMGKMR 20 (45) Q Consensus 6 stvfspevrnmgkmr 20 (45) +.+-||.+||||.+- T Consensus 99 ~~~as~qIRN~aTiG 113 (216) T d1rm6b2 99 ESVAGPTHRAAATLG 113 (216) T ss_dssp HHSSCHHHHHHCBHH T ss_pred HHHCCHHHHCCEECC T ss_conf 987799996872224 No 3 >d2vxfa1 b.38.1.5 (A:6-85) LSM14 homolog A (Lsm14a) {Zebrafish (Danio rerio) [TaxId: 7955]} Probab=1.67 E-value=1.5e+02 Score=12.83 Aligned_cols=15 Identities=40% Similarity=0.439 Sum_probs=12.3 Q ss_pred CHHCCCCCHHHHHHH Q ss_conf 001011486562020 Q 537021.9.peg.2 3 FIDSTVFSPEVRNMG 17 (45) Q Consensus 3 fidstvfspevrnmg 17 (45) ..+||+.--.||.+| T Consensus 26 ~~~sTi~L~nVrsfG 40 (80) T d2vxfa1 26 TENSTVALAKVRSFG 40 (80) T ss_dssp TTTTEEEEEEEEECC T ss_pred CCCCEEEEEEEEEEE T ss_conf 634789914315862 No 4 >d1xn8a_ a.229.1.1 (A:) Hypothetical protein YqbG {Bacillus subtilis [TaxId: 1423]} Probab=1.58 E-value=3.2e+02 Score=11.39 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=4.6 Q ss_pred CHHCCCCCHHHHH Q ss_conf 0010114865620 Q 537021.9.peg.2 3 FIDSTVFSPEVRN 15 (45) Q Consensus 3 fidstvfspevrn 15 (45) .|+-||| |||+| T Consensus 9 li~Ytv~-~~VK~ 20 (131) T d1xn8a_ 9 LKSYSVF-ESVKT 20 (131) T ss_dssp HHHHCCC-HHHHH T ss_pred HHHHHHH-HHHHC T ss_conf 8876627-98863 No 5 >d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Probab=1.53 E-value=3.7e+02 Score=11.10 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=12.9 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 011486562020111100002430 Q 537021.9.peg.2 6 STVFSPEVRNMGKMRSLTDNRCSR 29 (45) Q Consensus 6 stvfspevrnmgkmrsltdnrcsr 29 (45) +.+-||.+||+|.. -.|-|.. T Consensus 99 ~~~as~qIRn~aTi---GGni~~~ 119 (177) T d1ffvc2 99 KLIADPQVRNRGTI---GGDIAHG 119 (177) T ss_dssp GGSSCTTGGGTCBH---HHHHHTC T ss_pred HCCCCHHHEEEEEE---CCCEEEC T ss_conf 53589215689985---3636651 No 6 >d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Probab=1.51 E-value=3e+02 Score=11.54 Aligned_cols=12 Identities=17% Similarity=0.542 Sum_probs=6.3 Q ss_pred CCHHCCCCCHHH Q ss_conf 400101148656 Q 537021.9.peg.2 2 EFIDSTVFSPEV 13 (45) Q Consensus 2 efidstvfspev 13 (45) .|||.|...|+. T Consensus 3 ~~ID~TlL~p~~ 14 (226) T d1vcva1 3 HLVDYALLKPYL 14 (226) T ss_dssp GGEEEECCCTTC T ss_pred CHHCCCCCCCCC T ss_conf 501105899999 No 7 >d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Probab=1.48 E-value=3.9e+02 Score=11.04 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=12.5 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 011486562020111100002430 Q 537021.9.peg.2 6 STVFSPEVRNMGKMRSLTDNRCSR 29 (45) Q Consensus 6 stvfspevrnmgkmrsltdnrcsr 29 (45) ..+-+|.+||||. +-.|-|.. T Consensus 90 ~~ia~~qIRn~aT---iGGNl~~a 110 (167) T d1jroa4 90 RRFASEQVRQVAT---IGGNIANG 110 (167) T ss_dssp HTSSCHHHHTTCB---HHHHHHHC T ss_pred HHHCCHHHHEEEE---ECCCEEEC T ss_conf 8634875622557---52522333 No 8 >d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]} Probab=1.41 E-value=4e+02 Score=10.97 Aligned_cols=15 Identities=27% Similarity=0.612 Sum_probs=10.9 Q ss_pred HHHHHEEHHHEEEEE Q ss_conf 024300010115556 Q 537021.9.peg.2 25 NRCSRTISRIQLDLR 39 (45) Q Consensus 25 nrcsrtisriqldlr 39 (45) .+|.+.|+.-++-.| T Consensus 6 a~C~~~I~~~e~VmR 20 (31) T d1rutx3 6 SACGQSIPASELVMR 20 (31) T ss_dssp TTTCCEECTTSEEEE T ss_pred CCCCCCCCHHHHHEE T ss_conf 000586786685200 No 9 >d1u3em1 d.4.1.3 (M:1-105) Intron-encoded homing endonuclease I-HmuI {Bacteriophage SP01 [TaxId: 10685]} Probab=1.37 E-value=2.4e+02 Score=11.98 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=17.4 Q ss_pred CCCHHCCCCC--HHHHHHHHHHHHHHHHH Q ss_conf 9400101148--65620201111000024 Q 537021.9.peg.2 1 MEFIDSTVFS--PEVRNMGKMRSLTDNRC 27 (45) Q Consensus 1 mefidstvfs--pevrnmgkmrsltdnrc 27 (45) ||+-+-.-|. -+|-++|..+|...++. T Consensus 1 meWk~i~~~~~~Y~vS~~Grv~~~~~~~~ 29 (105) T d1u3em1 1 MEWKDIKGYEGHYQVSNTGEVYSIKSGKT 29 (105) T ss_dssp CCEEECTTSTTTEEEETTSCEEESSSCSE T ss_pred CCCEECCCCCCEEEECCCCCEEECCCCEE T ss_conf 98719899777058869977897639979 No 10 >d1pvza_ g.3.7.2 (A:) K+ toxin-like peptide Bmp07 (BmKK2) {Chinese scorpion (Buthus martensi karsch) [TaxId: 34649]} Probab=1.37 E-value=3.3e+02 Score=11.35 Aligned_cols=11 Identities=45% Similarity=0.881 Sum_probs=0.0 Q ss_pred HHHHHHHHHHH Q ss_conf 11100002430 Q 537021.9.peg.2 19 MRSLTDNRCSR 29 (45) Q Consensus 19 mrsltdnrcsr 29 (45) .|-.||..|+| T Consensus 5 vrc~td~dc~r 15 (31) T d1pvza_ 5 IKCATDADCSR 15 (31) T ss_dssp EECSSHHHHHH T ss_pred EEEECCHHHHH T ss_conf 88603420554 Done!