Query         537021.9.peg.254_1
Match_columns 38
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Wed May 25 16:09:21 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_254.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2gu2_A ASPA protein; aspartoac  30.5      17 0.00071   18.1   1.5   25    9-33    280-304 (312)
  2 2jrp_A Putative cytoplasmic pr  27.8      12 0.00049   18.8   0.3   10   24-33     60-69  (81)
  3 2jne_A Hypothetical protein YF  22.3      22 0.00093   17.5   0.8   10   24-33     90-99  (101)
  4 3nh4_A Aspartoacylase-2; merca  16.3      50  0.0021   15.8   1.6   23    8-30    288-310 (327)
  5 3klk_A Glucansucrase; native f  13.8      23 0.00095   17.4  -0.7   16    1-16    461-476 (1039)
  6 2fb7_A SM-like protein, LSM-14   7.6 1.4E+02  0.0059   13.6   1.5   11   23-33     23-33  (95)
  7 2vxe_A CG10686-PA; EDC3, CAR-1   7.2 1.5E+02  0.0063   13.5   1.5   11   23-33     17-27  (88)
  8 1laj_A Capsid protein; anti-pa   5.9 1.6E+02  0.0069   13.3   1.1   12   27-38    101-112 (217)
  9 3lw5_N Photosystem I-N subunit   4.9      64  0.0027   15.3  -1.5   31    3-33     40-70  (85)
 10 2q8r_E CCL14; common CC chemok   3.8 2.8E+02   0.012   12.2   3.3   34    1-34     17-50  (66)

No 1  
>2gu2_A ASPA protein; aspartoacylase family, aminoacylase-2, ACY-2, ACY2_RAT, structural genomics, PSI, protein structure initiative; HET: MSE; 1.80A {Rattus norvegicus} SCOP: c.56.5.7 PDB: 2q4z_A 2i3c_A 2q51_A 2o4h_A* 2o53_A
Probab=30.49  E-value=17  Score=18.06  Aligned_cols=25  Identities=24%  Similarity=0.208  Sum_probs=19.0

Q ss_pred             EEECCCCCCCCCEEEEEECCEEEEE
Q ss_conf             7634887312334667733527898
Q 537021.9.peg.2    9 YFHNENGYEKKGIKFLISKSRIRCV   33 (38)
Q Consensus         9 yfhnengyekkgikflisksrircv   33 (38)
                      -|-||-.|..|+|-|-.++...-.+
T Consensus       280 vFINEaAY~ek~iA~~lt~k~~~~~  304 (312)
T 2gu2_A          280 VFVNEAAYYEKKEAFAKTTKLTLNA  304 (312)
T ss_dssp             ESTTCGGGTTTTCSEEEEEEEEEEE
T ss_pred             ECCCHHHHHHHHHHHHHHCEEEEEC
T ss_conf             6347899876306876541168753


No 2  
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=27.81  E-value=12  Score=18.83  Aligned_cols=10  Identities=60%  Similarity=0.806  Sum_probs=7.8

Q ss_pred             EEECCEEEEE
Q ss_conf             7733527898
Q 537021.9.peg.2   24 LISKSRIRCV   33 (38)
Q Consensus        24 lisksrircv   33 (38)
                      ||||||++-+
T Consensus        60 LiSK~rV~F~   69 (81)
T 2jrp_A           60 LISKKRVNFV   69 (81)
T ss_dssp             CCCTTSSEEE
T ss_pred             EEEEEEEEEE
T ss_conf             2570168999


No 3  
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=22.25  E-value=22  Score=17.49  Aligned_cols=10  Identities=60%  Similarity=0.810  Sum_probs=8.2

Q ss_pred             EEECCEEEEE
Q ss_conf             7733527898
Q 537021.9.peg.2   24 LISKSRIRCV   33 (38)
Q Consensus        24 lisksrircv   33 (38)
                      ||||+|++-+
T Consensus        90 LiSKsRV~Fv   99 (101)
T 2jne_A           90 LISKKRVEFV   99 (101)
T ss_dssp             EECTTTSEEE
T ss_pred             EEEEEEEEEE
T ss_conf             2160148998


No 4  
>3nh4_A Aspartoacylase-2; mercapturates, hydrolase; 2.00A {Mus musculus} PDB: 3nh5_A 3nfz_A 3nh8_A*
Probab=16.29  E-value=50  Score=15.80  Aligned_cols=23  Identities=35%  Similarity=0.408  Sum_probs=17.9

Q ss_pred             EEEECCCCCCCCCEEEEEECCEE
Q ss_conf             07634887312334667733527
Q 537021.9.peg.2    8 GYFHNENGYEKKGIKFLISKSRI   30 (38)
Q Consensus         8 gyfhnengyekkgikflisksri   30 (38)
                      --|-||-.|-.|+|-|..++.+.
T Consensus       288 PvFINEaAY~ek~iA~~l~~k~~  310 (327)
T 3nh4_A          288 PVFINEAAYYEKHVAFLKSEKIR  310 (327)
T ss_dssp             CBSTTCGGGTTTTCSEEEEEEEE
T ss_pred             EECCCHHHHHHHHHHHHHHHEEE
T ss_conf             75044698876407775542479


No 5  
>3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A*
Probab=13.82  E-value=23  Score=17.43  Aligned_cols=16  Identities=31%  Similarity=0.879  Sum_probs=10.7

Q ss_pred             CCEEEEEEEEECCCCC
Q ss_conf             9605770076348873
Q 537021.9.peg.2    1 VPCYFYGGYFHNENGY   16 (38)
Q Consensus         1 vpcyfyggyfhnengy   16 (38)
                      +||-|||-++-....|
T Consensus       461 ~PcVFYGDLYgd~Gqy  476 (1039)
T 3klk_A          461 VPRVYYGDLYQDGGQY  476 (1039)
T ss_dssp             EEEEEHHHHBCSSBST
T ss_pred             CEEEEECCCCCCCCCC
T ss_conf             3036751246889864


No 6  
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=7.59  E-value=1.4e+02  Score=13.63  Aligned_cols=11  Identities=55%  Similarity=0.558  Sum_probs=8.8

Q ss_pred             EEEECCEEEEE
Q ss_conf             67733527898
Q 537021.9.peg.2   23 FLISKSRIRCV   33 (38)
Q Consensus        23 flisksrircv   33 (38)
                      -||||+.||-+
T Consensus        23 SLISk~dIRYE   33 (95)
T 2fb7_A           23 SLISKAEIRYE   33 (95)
T ss_dssp             EEEETTTEEEE
T ss_pred             EEEECCCCEEE
T ss_conf             99887883789


No 7  
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=7.23  E-value=1.5e+02  Score=13.50  Aligned_cols=11  Identities=55%  Similarity=0.537  Sum_probs=8.3

Q ss_pred             EEEECCEEEEE
Q ss_conf             67733527898
Q 537021.9.peg.2   23 FLISKSRIRCV   33 (38)
Q Consensus        23 flisksrircv   33 (38)
                      -||||+.||-+
T Consensus        17 SLISk~dIRYe   27 (88)
T 2vxe_A           17 SLISKADIRYE   27 (88)
T ss_dssp             EEEETTTEEEE
T ss_pred             EEEECCCCEEE
T ss_conf             99987882789


No 8  
>1laj_A Capsid protein; anti-parallel beta sheets, jelly roll, T=3 icosahedral virus, protein-RNA complex, disulphide bridge, icosahedral virus; 3.40A {Tomato aspermy virus} SCOP: b.121.4.5
Probab=5.93  E-value=1.6e+02  Score=13.31  Aligned_cols=12  Identities=42%  Similarity=0.894  Sum_probs=9.3

Q ss_pred             CCEEEEEEECCC
Q ss_conf             352789863269
Q 537021.9.peg.2   27 KSRIRCVQFGIN   38 (38)
Q Consensus        27 ksrircvqfgin   38 (38)
                      |..++|+|+.+|
T Consensus       101 kk~vs~iq~rlN  112 (217)
T 1laj_A          101 KKKVSCVQVRLN  112 (217)
T ss_dssp             TSEEEEEEEEEE
T ss_pred             HHHHEEEEEECC
T ss_conf             543104685237


No 9  
>3lw5_N Photosystem I-N subunit, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CL1 PQN BCR LMU LMG; 3.30A {Phaseolus vulgaris} PDB: 2o01_N*
Probab=4.90  E-value=64  Score=15.28  Aligned_cols=31  Identities=19%  Similarity=0.408  Sum_probs=22.9

Q ss_pred             EEEEEEEEECCCCCCCCCEEEEEECCEEEEE
Q ss_conf             0577007634887312334667733527898
Q 537021.9.peg.2    3 CYFYGGYFHNENGYEKKGIKFLISKSRIRCV   33 (38)
Q Consensus         3 cyfyggyfhnengyekkgikflisksrircv   33 (38)
                      |-|--.+|--++--++++++||-..-.|.|-
T Consensus        40 C~fP~Nf~GCq~la~~~~V~fls~Dl~iECE   70 (85)
T 3lw5_N           40 CKFPENFTGCQDLAKQKKVPFLSDDLDLECE   70 (85)
T ss_dssp             SSCCSCCSCSSSCCCTTBTTBSCCSCCCSCC
T ss_pred             CCCCCCCCCHHHHHHCCCCCEECCCCEEEEC
T ss_conf             0277321117989864898512155101644


No 10 
>2q8r_E CCL14; common CC chemokine fold, cytokine; 1.82A {Homo sapiens}
Probab=3.78  E-value=2.8e+02  Score=12.17  Aligned_cols=34  Identities=21%  Similarity=0.459  Sum_probs=0.0

Q ss_pred             CCEEEEEEEEECCCCCCCCCEEEEEECCEEEEEE
Q ss_conf             9605770076348873123346677335278986
Q 537021.9.peg.2    1 VPCYFYGGYFHNENGYEKKGIKFLISKSRIRCVQ   34 (38)
Q Consensus         1 vpcyfyggyfhnengyekkgikflisksrircvq   34 (38)
                      +|.-+.-+|+....+-..++|-|...+.|--|+.
T Consensus        17 Ip~~~I~~Y~~t~~~C~~~aVIF~tkkgr~iCad   50 (66)
T 2q8r_E           17 IPRQRIMDYYETNSQCSKPGIVFITKRGHSVCTN   50 (66)
T ss_dssp             CCGGGEEEEEECCTTSSSCCEEEEETTSCEEEEC
T ss_pred             CCHHHEEEEEECCCCCCCCEEEEEECCCCEECCC
T ss_conf             8956800888778999988699997789978079


Done!