Query 537021.9.peg.254_1 Match_columns 38 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 16:09:21 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_254.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2gu2_A ASPA protein; aspartoac 30.5 17 0.00071 18.1 1.5 25 9-33 280-304 (312) 2 2jrp_A Putative cytoplasmic pr 27.8 12 0.00049 18.8 0.3 10 24-33 60-69 (81) 3 2jne_A Hypothetical protein YF 22.3 22 0.00093 17.5 0.8 10 24-33 90-99 (101) 4 3nh4_A Aspartoacylase-2; merca 16.3 50 0.0021 15.8 1.6 23 8-30 288-310 (327) 5 3klk_A Glucansucrase; native f 13.8 23 0.00095 17.4 -0.7 16 1-16 461-476 (1039) 6 2fb7_A SM-like protein, LSM-14 7.6 1.4E+02 0.0059 13.6 1.5 11 23-33 23-33 (95) 7 2vxe_A CG10686-PA; EDC3, CAR-1 7.2 1.5E+02 0.0063 13.5 1.5 11 23-33 17-27 (88) 8 1laj_A Capsid protein; anti-pa 5.9 1.6E+02 0.0069 13.3 1.1 12 27-38 101-112 (217) 9 3lw5_N Photosystem I-N subunit 4.9 64 0.0027 15.3 -1.5 31 3-33 40-70 (85) 10 2q8r_E CCL14; common CC chemok 3.8 2.8E+02 0.012 12.2 3.3 34 1-34 17-50 (66) No 1 >2gu2_A ASPA protein; aspartoacylase family, aminoacylase-2, ACY-2, ACY2_RAT, structural genomics, PSI, protein structure initiative; HET: MSE; 1.80A {Rattus norvegicus} SCOP: c.56.5.7 PDB: 2q4z_A 2i3c_A 2q51_A 2o4h_A* 2o53_A Probab=30.49 E-value=17 Score=18.06 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=19.0 Q ss_pred EEECCCCCCCCCEEEEEECCEEEEE Q ss_conf 7634887312334667733527898 Q 537021.9.peg.2 9 YFHNENGYEKKGIKFLISKSRIRCV 33 (38) Q Consensus 9 yfhnengyekkgikflisksrircv 33 (38) -|-||-.|..|+|-|-.++...-.+ T Consensus 280 vFINEaAY~ek~iA~~lt~k~~~~~ 304 (312) T 2gu2_A 280 VFVNEAAYYEKKEAFAKTTKLTLNA 304 (312) T ss_dssp ESTTCGGGTTTTCSEEEEEEEEEEE T ss_pred ECCCHHHHHHHHHHHHHHCEEEEEC T ss_conf 6347899876306876541168753 No 2 >2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2} Probab=27.81 E-value=12 Score=18.83 Aligned_cols=10 Identities=60% Similarity=0.806 Sum_probs=7.8 Q ss_pred EEECCEEEEE Q ss_conf 7733527898 Q 537021.9.peg.2 24 LISKSRIRCV 33 (38) Q Consensus 24 lisksrircv 33 (38) ||||||++-+ T Consensus 60 LiSK~rV~F~ 69 (81) T 2jrp_A 60 LISKKRVNFV 69 (81) T ss_dssp CCCTTSSEEE T ss_pred EEEEEEEEEE T ss_conf 2570168999 No 3 >2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1 Probab=22.25 E-value=22 Score=17.49 Aligned_cols=10 Identities=60% Similarity=0.810 Sum_probs=8.2 Q ss_pred EEECCEEEEE Q ss_conf 7733527898 Q 537021.9.peg.2 24 LISKSRIRCV 33 (38) Q Consensus 24 lisksrircv 33 (38) ||||+|++-+ T Consensus 90 LiSKsRV~Fv 99 (101) T 2jne_A 90 LISKKRVEFV 99 (101) T ss_dssp EECTTTSEEE T ss_pred EEEEEEEEEE T ss_conf 2160148998 No 4 >3nh4_A Aspartoacylase-2; mercapturates, hydrolase; 2.00A {Mus musculus} PDB: 3nh5_A 3nfz_A 3nh8_A* Probab=16.29 E-value=50 Score=15.80 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=17.9 Q ss_pred EEEECCCCCCCCCEEEEEECCEE Q ss_conf 07634887312334667733527 Q 537021.9.peg.2 8 GYFHNENGYEKKGIKFLISKSRI 30 (38) Q Consensus 8 gyfhnengyekkgikflisksri 30 (38) --|-||-.|-.|+|-|..++.+. T Consensus 288 PvFINEaAY~ek~iA~~l~~k~~ 310 (327) T 3nh4_A 288 PVFINEAAYYEKHVAFLKSEKIR 310 (327) T ss_dssp CBSTTCGGGTTTTCSEEEEEEEE T ss_pred EECCCHHHHHHHHHHHHHHHEEE T ss_conf 75044698876407775542479 No 5 >3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* Probab=13.82 E-value=23 Score=17.43 Aligned_cols=16 Identities=31% Similarity=0.879 Sum_probs=10.7 Q ss_pred CCEEEEEEEEECCCCC Q ss_conf 9605770076348873 Q 537021.9.peg.2 1 VPCYFYGGYFHNENGY 16 (38) Q Consensus 1 vpcyfyggyfhnengy 16 (38) +||-|||-++-....| T Consensus 461 ~PcVFYGDLYgd~Gqy 476 (1039) T 3klk_A 461 VPRVYYGDLYQDGGQY 476 (1039) T ss_dssp EEEEEHHHHBCSSBST T ss_pred CEEEEECCCCCCCCCC T ss_conf 3036751246889864 No 6 >2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A Probab=7.59 E-value=1.4e+02 Score=13.63 Aligned_cols=11 Identities=55% Similarity=0.558 Sum_probs=8.8 Q ss_pred EEEECCEEEEE Q ss_conf 67733527898 Q 537021.9.peg.2 23 FLISKSRIRCV 33 (38) Q Consensus 23 flisksrircv 33 (38) -||||+.||-+ T Consensus 23 SLISk~dIRYE 33 (95) T 2fb7_A 23 SLISKAEIRYE 33 (95) T ss_dssp EEEETTTEEEE T ss_pred EEEECCCCEEE T ss_conf 99887883789 No 7 >2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster} Probab=7.23 E-value=1.5e+02 Score=13.50 Aligned_cols=11 Identities=55% Similarity=0.537 Sum_probs=8.3 Q ss_pred EEEECCEEEEE Q ss_conf 67733527898 Q 537021.9.peg.2 23 FLISKSRIRCV 33 (38) Q Consensus 23 flisksrircv 33 (38) -||||+.||-+ T Consensus 17 SLISk~dIRYe 27 (88) T 2vxe_A 17 SLISKADIRYE 27 (88) T ss_dssp EEEETTTEEEE T ss_pred EEEECCCCEEE T ss_conf 99987882789 No 8 >1laj_A Capsid protein; anti-parallel beta sheets, jelly roll, T=3 icosahedral virus, protein-RNA complex, disulphide bridge, icosahedral virus; 3.40A {Tomato aspermy virus} SCOP: b.121.4.5 Probab=5.93 E-value=1.6e+02 Score=13.31 Aligned_cols=12 Identities=42% Similarity=0.894 Sum_probs=9.3 Q ss_pred CCEEEEEEECCC Q ss_conf 352789863269 Q 537021.9.peg.2 27 KSRIRCVQFGIN 38 (38) Q Consensus 27 ksrircvqfgin 38 (38) |..++|+|+.+| T Consensus 101 kk~vs~iq~rlN 112 (217) T 1laj_A 101 KKKVSCVQVRLN 112 (217) T ss_dssp TSEEEEEEEEEE T ss_pred HHHHEEEEEECC T ss_conf 543104685237 No 9 >3lw5_N Photosystem I-N subunit, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CL1 PQN BCR LMU LMG; 3.30A {Phaseolus vulgaris} PDB: 2o01_N* Probab=4.90 E-value=64 Score=15.28 Aligned_cols=31 Identities=19% Similarity=0.408 Sum_probs=22.9 Q ss_pred EEEEEEEEECCCCCCCCCEEEEEECCEEEEE Q ss_conf 0577007634887312334667733527898 Q 537021.9.peg.2 3 CYFYGGYFHNENGYEKKGIKFLISKSRIRCV 33 (38) Q Consensus 3 cyfyggyfhnengyekkgikflisksrircv 33 (38) |-|--.+|--++--++++++||-..-.|.|- T Consensus 40 C~fP~Nf~GCq~la~~~~V~fls~Dl~iECE 70 (85) T 3lw5_N 40 CKFPENFTGCQDLAKQKKVPFLSDDLDLECE 70 (85) T ss_dssp SSCCSCCSCSSSCCCTTBTTBSCCSCCCSCC T ss_pred CCCCCCCCCHHHHHHCCCCCEECCCCEEEEC T ss_conf 0277321117989864898512155101644 No 10 >2q8r_E CCL14; common CC chemokine fold, cytokine; 1.82A {Homo sapiens} Probab=3.78 E-value=2.8e+02 Score=12.17 Aligned_cols=34 Identities=21% Similarity=0.459 Sum_probs=0.0 Q ss_pred CCEEEEEEEEECCCCCCCCCEEEEEECCEEEEEE Q ss_conf 9605770076348873123346677335278986 Q 537021.9.peg.2 1 VPCYFYGGYFHNENGYEKKGIKFLISKSRIRCVQ 34 (38) Q Consensus 1 vpcyfyggyfhnengyekkgikflisksrircvq 34 (38) +|.-+.-+|+....+-..++|-|...+.|--|+. T Consensus 17 Ip~~~I~~Y~~t~~~C~~~aVIF~tkkgr~iCad 50 (66) T 2q8r_E 17 IPRQRIMDYYETNSQCSKPGIVFITKRGHSVCTN 50 (66) T ss_dssp CCGGGEEEEEECCTTSSSCCEEEEETTSCEEEEC T ss_pred CCHHHEEEEEECCCCCCCCEEEEEECCCCEECCC T ss_conf 8956800888778999988699997789978079 Done!