Query 537021.9.peg.26_1 Match_columns 49 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Sun May 22 13:39:34 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_26.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1n13_A PVLARGDC, pyruvoyl-depe 15.2 43 0.0018 15.5 1.0 23 4-26 6-28 (52) 2 1n2m_A PVLARGDC, pyruvoyl-depe 12.0 60 0.0025 14.8 1.0 29 4-32 6-34 (165) 3 1t12_A LTP 1, nonspecific lipi 8.3 88 0.0037 14.0 0.7 10 3-12 74-83 (91) 4 2do3_A Transcription elongatio 7.1 1E+02 0.0042 13.7 0.6 16 4-19 5-20 (69) 5 3kbg_A 30S ribosomal protein S 6.4 1.6E+02 0.0067 12.8 1.3 17 10-26 56-72 (213) 6 2iny_A Hexon protein, late pro 5.5 1.1E+02 0.0045 13.6 -0.0 14 6-19 526-539 (942) 7 1jgn_B PAIP2, polyadenylate-bi 4.4 2.1E+02 0.0087 12.2 0.8 8 23-30 3-10 (26) 8 2obe_A Hexon, PII; trimer, dou 3.5 1.5E+02 0.0061 12.9 -0.5 13 7-19 537-549 (932) 9 2hw2_A Rifampin ADP-ribosyl tr 3.5 2.7E+02 0.011 11.6 1.2 18 1-18 2-19 (143) 10 3owc_A Probable acetyltransfer 3.5 1.9E+02 0.0081 12.4 0.0 12 3-14 2-13 (188) No 1 >1n13_A PVLARGDC, pyruvoyl-dependent arginine decarboxylase beta chain; pyruvoyl group, pyruvate, agmatine, lyase; 1.40A {Methanocaldococcus jannaschii} SCOP: d.155.1.2 PDB: 1mt1_A 2qqc_A 2qqd_A Probab=15.19 E-value=43 Score=15.55 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=16.7 Q ss_pred CCCCCCCCCCCCEEEEEEECCCC Q ss_conf 76344422421011110113578 Q 537021.9.peg.2 4 IPIPFPISIPRKYFHILISKKNK 26 (49) Q Consensus 4 ipipfpisiprkyfhiliskknk 26 (49) -||-+|..+|.|||-.--+-..+ T Consensus 6 ~~ih~~~~~Pkk~~lvag~~Eg~ 28 (52) T 1n13_A 6 NPLHAYFKLPNTVSLVAGSSEGE 28 (52) T ss_dssp -CCSCCCCCCCEEEEEEEEEECS T ss_pred CCCCCCCCCCCEEEEEEECCCCC T ss_conf 52204435896799997225788 No 2 >1n2m_A PVLARGDC, pyruvoyl-dependent arginine decarboxylase; pyruvoyl group, pyruvate, agmatine, lyase; 1.90A {Methanocaldococcus jannaschii} SCOP: d.155.1.2 PDB: 2qqd_C Probab=11.99 E-value=60 Score=14.83 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=19.2 Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCCCH Q ss_conf 76344422421011110113578886200 Q 537021.9.peg.2 4 IPIPFPISIPRKYFHILISKKNKNPNASL 32 (49) Q Consensus 4 ipipfpisiprkyfhiliskknknpnasl 32 (49) -||-.|.-||+|||-.--+-..+++-+|. T Consensus 6 ~~~~~~~~vP~~~f~t~G~g~~~~~l~sF 34 (165) T 1n2m_A 6 NPLHAYFKLPNTVSLVAGSSEGETPLNAF 34 (165) T ss_dssp -CCSCCCCCCCEEEEEEEEEECSSHHHHH T ss_pred CCCCCCCCCCCEEEEEEEEECCCCHHHHH T ss_conf 53535457886799998840788667789 No 3 >1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum} Probab=8.27 E-value=88 Score=14.03 Aligned_cols=10 Identities=40% Similarity=0.743 Sum_probs=5.4 Q ss_pred CCCCCCCCCC Q ss_conf 6763444224 Q 537021.9.peg.2 3 NIPIPFPISI 12 (49) Q Consensus 3 nipipfpisi 12 (49) ++.+|||||- T Consensus 74 ~V~~p~pIs~ 83 (91) T 1t12_A 74 GVNIPYKISP 83 (91) T ss_dssp TCCCSSCSSS T ss_pred CCCCCCCCCC T ss_conf 7899999888 No 4 >2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5 Probab=7.15 E-value=1e+02 Score=13.75 Aligned_cols=16 Identities=38% Similarity=0.592 Sum_probs=13.0 Q ss_pred CCCCCCCCCCCCEEEE Q ss_conf 7634442242101111 Q 537021.9.peg.2 4 IPIPFPISIPRKYFHI 19 (49) Q Consensus 4 ipipfpisiprkyfhi 19 (49) --|-||++--||||.. T Consensus 5 ~~~efp~~~LrK~F~~ 20 (69) T 2do3_A 5 SSGEFPAQELRKYFKM 20 (69) T ss_dssp SCCCCCCCCCCSSCCT T ss_pred CEEEECHHHCEEECCC T ss_conf 3877567990551349 No 5 >3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum} Probab=6.41 E-value=1.6e+02 Score=12.76 Aligned_cols=17 Identities=12% Similarity=0.362 Sum_probs=14.1 Q ss_pred CCCCCCEEEEEEECCCC Q ss_conf 22421011110113578 Q 537021.9.peg.2 10 ISIPRKYFHILISKKNK 26 (49) Q Consensus 10 isiprkyfhiliskknk 26 (49) ||||.+||.++...+.+ T Consensus 56 isi~~e~yRv~~d~kgr 72 (213) T 3kbg_A 56 IEINGESYRVVYNDQGA 72 (213) T ss_dssp EEETTEEEEEEECTTSC T ss_pred EEECCCEEEEEECCCCE T ss_conf 99789879999869961 No 6 >2iny_A Hexon protein, late protein 2; avian adenovirus, CELO, major coat protein, crystal packing, nanotechnology, viral jelly roll, viral protein; 3.90A {Fowl adenovirus 1} Probab=5.51 E-value=1.1e+02 Score=13.61 Aligned_cols=14 Identities=50% Similarity=0.987 Sum_probs=10.6 Q ss_pred CCCCCCCCCCEEEE Q ss_conf 34442242101111 Q 537021.9.peg.2 6 IPFPISIPRKYFHI 19 (49) Q Consensus 6 ipfpisiprkyfhi 19 (49) .+|-|.+|.|+|-| T Consensus 526 ~~FHIQVPQKFFAI 539 (942) T 2iny_A 526 CRFHIQVPQKYFAI 539 (942) T ss_dssp CCCCEEECCCCTTT T ss_pred CCEEEECCHHHHHH T ss_conf 11277034488777 No 7 >1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens} Probab=4.37 E-value=2.1e+02 Score=12.20 Aligned_cols=8 Identities=75% Similarity=0.941 Sum_probs=0.0 Q ss_pred CCCCCCCC Q ss_conf 35788862 Q 537021.9.peg.2 23 KKNKNPNA 30 (49) Q Consensus 23 kknknpna 30 (49) |.|-|||| T Consensus 3 ksnlnpna 10 (26) T 1jgn_B 3 KSNLNPNA 10 (26) T ss_dssp CCSSCTTC T ss_pred CCCCCCCH T ss_conf 36689885 No 8 >2obe_A Hexon, PII; trimer, double-barrel subunit, viral jellyroll, base, hypervariable tower, viral protein; 2.10A {Simian adenovirus 25} PDB: 1p2z_A* 3iyn_A 1p30_A 2bvi_F Probab=3.55 E-value=1.5e+02 Score=12.94 Aligned_cols=13 Identities=54% Similarity=1.239 Sum_probs=0.0 Q ss_pred CCCCCCCCCEEEE Q ss_conf 4442242101111 Q 537021.9.peg.2 7 PFPISIPRKYFHI 19 (49) Q Consensus 7 pfpisiprkyfhi 19 (49) +|-|.+|.|+|-| T Consensus 537 ~FHIQVPQKFFAI 549 (932) T 2obe_A 537 PFHIQVPQKFFAI 549 (932) T ss_dssp EEEEEEECCCTTT T ss_pred EEEEECCHHHHHH T ss_conf 0477034488777 No 9 >2hw2_A Rifampin ADP-ribosyl transferase; protein-antibiotic complex, ADP-ribosylation; HET: RFP; 1.45A {Mycobacterium smegmatis} Probab=3.52 E-value=2.7e+02 Score=11.63 Aligned_cols=18 Identities=33% Similarity=0.704 Sum_probs=0.0 Q ss_pred CCCCCCCCCCCCCCCEEE Q ss_conf 986763444224210111 Q 537021.9.peg.2 1 MTNIPIPFPISIPRKYFH 18 (49) Q Consensus 1 mtnipipfpisiprkyfh 18 (49) |++-|-||-+.-.--||| T Consensus 2 ~~~~p~~fev~d~Gpf~H 19 (143) T 2hw2_A 2 VANPPKPFEVHESGAYLH 19 (143) T ss_dssp ----CCTTCBCTTCCEEE T ss_pred CCCCCCCCCCCCCCCCCC T ss_conf 788998730058887445 No 10 >3owc_A Probable acetyltransferase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: COA; 1.90A {Pseudomonas aeruginosa} Probab=3.49 E-value=1.9e+02 Score=12.35 Aligned_cols=12 Identities=33% Similarity=0.611 Sum_probs=0.0 Q ss_pred CCCCCCCCCCCC Q ss_conf 676344422421 Q 537021.9.peg.2 3 NIPIPFPISIPR 14 (49) Q Consensus 3 nipipfpisipr 14 (49) |.|+|..+|+|+ T Consensus 2 ~~p~p~~~~~~~ 13 (188) T 3owc_A 2 HMPTPGTGSVPE 13 (188) T ss_dssp -----------C T ss_pred CCCCCCCCCCCC T ss_conf 989899888997 Done!