Query         537021.9.peg.26_1
Match_columns 49
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Sun May 22 13:39:34 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_26.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1n13_A PVLARGDC, pyruvoyl-depe  15.2      43  0.0018   15.5   1.0   23    4-26      6-28  (52)
  2 1n2m_A PVLARGDC, pyruvoyl-depe  12.0      60  0.0025   14.8   1.0   29    4-32      6-34  (165)
  3 1t12_A LTP 1, nonspecific lipi   8.3      88  0.0037   14.0   0.7   10    3-12     74-83  (91)
  4 2do3_A Transcription elongatio   7.1   1E+02  0.0042   13.7   0.6   16    4-19      5-20  (69)
  5 3kbg_A 30S ribosomal protein S   6.4 1.6E+02  0.0067   12.8   1.3   17   10-26     56-72  (213)
  6 2iny_A Hexon protein, late pro   5.5 1.1E+02  0.0045   13.6  -0.0   14    6-19    526-539 (942)
  7 1jgn_B PAIP2, polyadenylate-bi   4.4 2.1E+02  0.0087   12.2   0.8    8   23-30      3-10  (26)
  8 2obe_A Hexon, PII; trimer, dou   3.5 1.5E+02  0.0061   12.9  -0.5   13    7-19    537-549 (932)
  9 2hw2_A Rifampin ADP-ribosyl tr   3.5 2.7E+02   0.011   11.6   1.2   18    1-18      2-19  (143)
 10 3owc_A Probable acetyltransfer   3.5 1.9E+02  0.0081   12.4   0.0   12    3-14      2-13  (188)

No 1  
>1n13_A PVLARGDC, pyruvoyl-dependent arginine decarboxylase beta chain; pyruvoyl group, pyruvate, agmatine, lyase; 1.40A {Methanocaldococcus jannaschii} SCOP: d.155.1.2 PDB: 1mt1_A 2qqc_A 2qqd_A
Probab=15.19  E-value=43  Score=15.55  Aligned_cols=23  Identities=13%  Similarity=0.143  Sum_probs=16.7

Q ss_pred             CCCCCCCCCCCCEEEEEEECCCC
Q ss_conf             76344422421011110113578
Q 537021.9.peg.2    4 IPIPFPISIPRKYFHILISKKNK   26 (49)
Q Consensus         4 ipipfpisiprkyfhiliskknk   26 (49)
                      -||-+|..+|.|||-.--+-..+
T Consensus         6 ~~ih~~~~~Pkk~~lvag~~Eg~   28 (52)
T 1n13_A            6 NPLHAYFKLPNTVSLVAGSSEGE   28 (52)
T ss_dssp             -CCSCCCCCCCEEEEEEEEEECS
T ss_pred             CCCCCCCCCCCEEEEEEECCCCC
T ss_conf             52204435896799997225788


No 2  
>1n2m_A PVLARGDC, pyruvoyl-dependent arginine decarboxylase; pyruvoyl group, pyruvate, agmatine, lyase; 1.90A {Methanocaldococcus jannaschii} SCOP: d.155.1.2 PDB: 2qqd_C
Probab=11.99  E-value=60  Score=14.83  Aligned_cols=29  Identities=14%  Similarity=0.204  Sum_probs=19.2

Q ss_pred             CCCCCCCCCCCCEEEEEEECCCCCCCCCH
Q ss_conf             76344422421011110113578886200
Q 537021.9.peg.2    4 IPIPFPISIPRKYFHILISKKNKNPNASL   32 (49)
Q Consensus         4 ipipfpisiprkyfhiliskknknpnasl   32 (49)
                      -||-.|.-||+|||-.--+-..+++-+|.
T Consensus         6 ~~~~~~~~vP~~~f~t~G~g~~~~~l~sF   34 (165)
T 1n2m_A            6 NPLHAYFKLPNTVSLVAGSSEGETPLNAF   34 (165)
T ss_dssp             -CCSCCCCCCCEEEEEEEEEECSSHHHHH
T ss_pred             CCCCCCCCCCCEEEEEEEEECCCCHHHHH
T ss_conf             53535457886799998840788667789


No 3  
>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}
Probab=8.27  E-value=88  Score=14.03  Aligned_cols=10  Identities=40%  Similarity=0.743  Sum_probs=5.4

Q ss_pred             CCCCCCCCCC
Q ss_conf             6763444224
Q 537021.9.peg.2    3 NIPIPFPISI   12 (49)
Q Consensus         3 nipipfpisi   12 (49)
                      ++.+|||||-
T Consensus        74 ~V~~p~pIs~   83 (91)
T 1t12_A           74 GVNIPYKISP   83 (91)
T ss_dssp             TCCCSSCSSS
T ss_pred             CCCCCCCCCC
T ss_conf             7899999888


No 4  
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=7.15  E-value=1e+02  Score=13.75  Aligned_cols=16  Identities=38%  Similarity=0.592  Sum_probs=13.0

Q ss_pred             CCCCCCCCCCCCEEEE
Q ss_conf             7634442242101111
Q 537021.9.peg.2    4 IPIPFPISIPRKYFHI   19 (49)
Q Consensus         4 ipipfpisiprkyfhi   19 (49)
                      --|-||++--||||..
T Consensus         5 ~~~efp~~~LrK~F~~   20 (69)
T 2do3_A            5 SSGEFPAQELRKYFKM   20 (69)
T ss_dssp             SCCCCCCCCCCSSCCT
T ss_pred             CEEEECHHHCEEECCC
T ss_conf             3877567990551349


No 5  
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=6.41  E-value=1.6e+02  Score=12.76  Aligned_cols=17  Identities=12%  Similarity=0.362  Sum_probs=14.1

Q ss_pred             CCCCCCEEEEEEECCCC
Q ss_conf             22421011110113578
Q 537021.9.peg.2   10 ISIPRKYFHILISKKNK   26 (49)
Q Consensus        10 isiprkyfhiliskknk   26 (49)
                      ||||.+||.++...+.+
T Consensus        56 isi~~e~yRv~~d~kgr   72 (213)
T 3kbg_A           56 IEINGESYRVVYNDQGA   72 (213)
T ss_dssp             EEETTEEEEEEECTTSC
T ss_pred             EEECCCEEEEEECCCCE
T ss_conf             99789879999869961


No 6  
>2iny_A Hexon protein, late protein 2; avian adenovirus, CELO, major coat protein, crystal packing, nanotechnology, viral jelly roll, viral protein; 3.90A {Fowl adenovirus 1}
Probab=5.51  E-value=1.1e+02  Score=13.61  Aligned_cols=14  Identities=50%  Similarity=0.987  Sum_probs=10.6

Q ss_pred             CCCCCCCCCCEEEE
Q ss_conf             34442242101111
Q 537021.9.peg.2    6 IPFPISIPRKYFHI   19 (49)
Q Consensus         6 ipfpisiprkyfhi   19 (49)
                      .+|-|.+|.|+|-|
T Consensus       526 ~~FHIQVPQKFFAI  539 (942)
T 2iny_A          526 CRFHIQVPQKYFAI  539 (942)
T ss_dssp             CCCCEEECCCCTTT
T ss_pred             CCEEEECCHHHHHH
T ss_conf             11277034488777


No 7  
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=4.37  E-value=2.1e+02  Score=12.20  Aligned_cols=8  Identities=75%  Similarity=0.941  Sum_probs=0.0

Q ss_pred             CCCCCCCC
Q ss_conf             35788862
Q 537021.9.peg.2   23 KKNKNPNA   30 (49)
Q Consensus        23 kknknpna   30 (49)
                      |.|-||||
T Consensus         3 ksnlnpna   10 (26)
T 1jgn_B            3 KSNLNPNA   10 (26)
T ss_dssp             CCSSCTTC
T ss_pred             CCCCCCCH
T ss_conf             36689885


No 8  
>2obe_A Hexon, PII; trimer, double-barrel subunit, viral jellyroll, base, hypervariable tower, viral protein; 2.10A {Simian adenovirus 25} PDB: 1p2z_A* 3iyn_A 1p30_A 2bvi_F
Probab=3.55  E-value=1.5e+02  Score=12.94  Aligned_cols=13  Identities=54%  Similarity=1.239  Sum_probs=0.0

Q ss_pred             CCCCCCCCCEEEE
Q ss_conf             4442242101111
Q 537021.9.peg.2    7 PFPISIPRKYFHI   19 (49)
Q Consensus         7 pfpisiprkyfhi   19 (49)
                      +|-|.+|.|+|-|
T Consensus       537 ~FHIQVPQKFFAI  549 (932)
T 2obe_A          537 PFHIQVPQKFFAI  549 (932)
T ss_dssp             EEEEEEECCCTTT
T ss_pred             EEEEECCHHHHHH
T ss_conf             0477034488777


No 9  
>2hw2_A Rifampin ADP-ribosyl transferase; protein-antibiotic complex, ADP-ribosylation; HET: RFP; 1.45A {Mycobacterium smegmatis}
Probab=3.52  E-value=2.7e+02  Score=11.63  Aligned_cols=18  Identities=33%  Similarity=0.704  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCCCCCCEEE
Q ss_conf             986763444224210111
Q 537021.9.peg.2    1 MTNIPIPFPISIPRKYFH   18 (49)
Q Consensus         1 mtnipipfpisiprkyfh   18 (49)
                      |++-|-||-+.-.--|||
T Consensus         2 ~~~~p~~fev~d~Gpf~H   19 (143)
T 2hw2_A            2 VANPPKPFEVHESGAYLH   19 (143)
T ss_dssp             ----CCTTCBCTTCCEEE
T ss_pred             CCCCCCCCCCCCCCCCCC
T ss_conf             788998730058887445


No 10 
>3owc_A Probable acetyltransferase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: COA; 1.90A {Pseudomonas aeruginosa}
Probab=3.49  E-value=1.9e+02  Score=12.35  Aligned_cols=12  Identities=33%  Similarity=0.611  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCCC
Q ss_conf             676344422421
Q 537021.9.peg.2    3 NIPIPFPISIPR   14 (49)
Q Consensus         3 nipipfpisipr   14 (49)
                      |.|+|..+|+|+
T Consensus         2 ~~p~p~~~~~~~   13 (188)
T 3owc_A            2 HMPTPGTGSVPE   13 (188)
T ss_dssp             -----------C
T ss_pred             CCCCCCCCCCCC
T ss_conf             989899888997


Done!