RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.26_1
         (49 letters)



>gnl|CDD|33204 COG3397, COG3397, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 308

 Score = 25.0 bits (54), Expect = 4.3
 Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 3/27 (11%)

Query: 15  KYFHILISKKNKNPNASLTKKKRSDSE 41
            Y+   I+K   +PN  LT     D E
Sbjct: 129 AYWKYYITKPGWDPNKPLT---WDDLE 152


>gnl|CDD|145950 pfam03067, Chitin_bind_3, Chitin binding domain.  This domain is
           found associated with a wide variety of cellulose
           binding domain. This domain however is a chitin binding
           domain. This domain is found in isolation in baculoviral
           spheroidins and spindolins, protein of unknown function.
          Length = 180

 Score = 24.7 bits (54), Expect = 5.4
 Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 3/27 (11%)

Query: 15  KYFHILISKKNKNPNASLTKKKRSDSE 41
            YF   I+K   +PN  LT     D E
Sbjct: 99  SYFEYYITKPGWDPNQPLT---WDDLE 122


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.313    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0692    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 574,853
Number of extensions: 17743
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 3
Length of query: 49
Length of database: 6,263,737
Length adjustment: 22
Effective length of query: 27
Effective length of database: 5,788,339
Effective search space: 156285153
Effective search space used: 156285153
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.5 bits)