Query         537021.9.peg.298_1
Match_columns 38
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed May 25 15:58:23 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_298.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1dtc_A Acetyl-delta-toxin; NM  31.2      34   0.001   16.6   2.4   16    1-16      1-16  (26)
  2 >1hbn_B Methyl-coenzyme M redu   6.2 2.3E+02  0.0068   12.5   2.8   21   11-31     33-61  (62)
  3 >1dt9_A ERF1, protein (eukaryo   5.2 1.9E+02  0.0057   12.9   0.4   21    8-28     15-35  (102)
  4 >3f3f_C Nucleoporin NUP85; str   5.2 2.2E+02  0.0064   12.6   0.6   22    2-25     41-62  (76)
  5 >1eci_B Ectatomin; pore-formin   4.7 2.5E+02  0.0073   12.3   0.6   10   10-19     22-31  (34)
  6 >1xou_A ESPA; coiled coil, hel   3.8 3.5E+02    0.01   11.6   3.1   21   10-30    158-178 (192)
  7 >3ibv_A Exportin-T; karyopheri   3.6 3.6E+02   0.011   11.5   1.4   11    5-15     92-102 (208)
  8 >1oks_A RNA polymerase alpha s   3.5 3.8E+02   0.011   11.4   1.7   10   19-28      4-13  (56)
  9 >2ztg_A Alanyl-tRNA synthetase   3.4 3.4E+02    0.01   11.6   0.4   10    2-11     22-31  (71)
 10 >3hy0_A Alanyl-tRNA synthetase   3.0 3.9E+02   0.012   11.3   0.4    9    2-10     26-34  (73)

No 1  
>>1dtc_A Acetyl-delta-toxin; NMR {Staphylococcus aureus} (A:)
Probab=31.21  E-value=34  Score=16.58  Aligned_cols=16  Identities=50%  Similarity=0.740  Sum_probs=13.3

Q ss_pred             CCHHHHHHHHHHHHHH
Q ss_conf             9047999999999998
Q 537021.9.peg.2    1 MAHDLYETIGTIQKMI   16 (38)
Q Consensus         1 mahdlyetigtiqkmi   16 (38)
                      ||.|...|||..-|-|
T Consensus         1 ma~diistigdlvkwi   16 (26)
T 1dtc_A            1 MAQDIISTIGDLVKWI   16 (26)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
T ss_conf             9078999999999999


No 2  
>>1hbn_B Methyl-coenzyme M reductase I beta subunit; methanogenesis, biological methanogenesis, NI-enzyme, oxidoreductase; HET: MHS AGM MGN F43 TP7; 1.16A {Methanothermobacterthermautotrophicus} (B:1-43,B:424-442)
Probab=6.18  E-value=2.3e+02  Score=12.48  Aligned_cols=21  Identities=33%  Similarity=0.537  Sum_probs=11.6

Q ss_pred             HHHHHHH--------HHHHHHHHHHHHHH
Q ss_conf             9999987--------79999999997753
Q 537021.9.peg.2   11 TIQKMIK--------TKYVVSSLIKSLNE   31 (38)
Q Consensus        11 tiqkmik--------tkyvvsslikslne   31 (38)
                      +||+||+        -||||..--.--||
T Consensus        33 aIkkiI~~tKR~~~~~~~~~~~~~~~~~~   61 (62)
T 1hbn_B           33 AIKSIVQGIKRFREPLKYVVEAAAEIKNE   61 (62)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             79999986557653799999999886326


No 3  
>>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} (A:30-131)
Probab=5.19  E-value=1.9e+02  Score=12.86  Aligned_cols=21  Identities=33%  Similarity=0.472  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999998779999999997
Q 537021.9.peg.2    8 TIGTIQKMIKTKYVVSSLIKS   28 (38)
Q Consensus         8 tigtiqkmiktkyvvssliks   28 (38)
                      .|+.+.+|....|-..|-|||
T Consensus        15 ~I~~v~~~L~~E~~~AsNIKs   35 (102)
T 1dt9_A           15 QISRVAKMLADEFGTASNIKS   35 (102)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHH
T ss_conf             657999999999867630334


No 4  
>>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleoporin complex, nuclear pore complex, macromolecular assembly; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B (C:495-570)
Probab=5.18  E-value=2.2e+02  Score=12.62  Aligned_cols=22  Identities=27%  Similarity=0.738  Sum_probs=12.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             047999999999998779999999
Q 537021.9.peg.2    2 AHDLYETIGTIQKMIKTKYVVSSL   25 (38)
Q Consensus         2 ahdlyetigtiqkmiktkyvvssl   25 (38)
                      |..+|-+.|  ||++...|+..+|
T Consensus        41 A~~iy~~~G--~k~l~~g~~~Eal   62 (76)
T 3f3f_C           41 AKEIYTTLG--NQMLSAHNIIESI   62 (76)
T ss_dssp             HHHHHHHHH--C------------
T ss_pred             HHHHHHHHH--HHHHHCCCHHHHH
T ss_conf             999999999--9999778799999


No 5  
>>1eci_B Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} (B:)
Probab=4.66  E-value=2.5e+02  Score=12.33  Aligned_cols=10  Identities=60%  Similarity=0.893  Sum_probs=4.7

Q ss_pred             HHHHHHHHHH
Q ss_conf             9999998779
Q 537021.9.peg.2   10 GTIQKMIKTK   19 (38)
Q Consensus        10 gtiqkmiktk   19 (38)
                      |.|..|||.|
T Consensus        22 gsiatmikkk   31 (34)
T 1eci_B           22 GSIATMIKKK   31 (34)
T ss_dssp             TTHHHHHHHH
T ss_pred             CHHHHHHHHH
T ss_conf             1599999885


No 6  
>>1xou_A ESPA; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} (A:)
Probab=3.80  E-value=3.5e+02  Score=11.60  Aligned_cols=21  Identities=19%  Similarity=0.108  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999877999999999775
Q 537021.9.peg.2   10 GTIQKMIKTKYVVSSLIKSLN   30 (38)
Q Consensus        10 gtiqkmiktkyvvssliksln   30 (38)
                      =.||||..+--+.-|++.++-
T Consensus       158 LqlQk~mQtyN~~vs~~sslq  178 (192)
T 1xou_A          158 LEIQQXSNTLNLLTSARSDXQ  178 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999998999


No 7  
>>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* (A:528-735)
Probab=3.64  E-value=3.6e+02  Score=11.52  Aligned_cols=11  Identities=36%  Similarity=0.742  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999999
Q 537021.9.peg.2    5 LYETIGTIQKM   15 (38)
Q Consensus         5 lyetigtiqkm   15 (38)
                      |||++|.+--+
T Consensus        92 LFEa~G~Lis~  102 (208)
T 3ibv_A           92 LFETVGVLISS  102 (208)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999985


No 8  
>>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} (A:)
Probab=3.46  E-value=3.8e+02  Score=11.43  Aligned_cols=10  Identities=50%  Similarity=0.717  Sum_probs=4.9

Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999997
Q 537021.9.peg.2   19 KYVVSSLIKS   28 (38)
Q Consensus        19 kyvvssliks   28 (38)
                      +-|..|+|||
T Consensus         4 rsVirSiIkS   13 (56)
T 1oks_A            4 RSVIRSIIKS   13 (56)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             8999999998


No 9  
>>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} (A:424-494)
Probab=3.35  E-value=3.4e+02  Score=11.64  Aligned_cols=10  Identities=30%  Similarity=0.637  Sum_probs=5.7

Q ss_pred             CHHHHHHHHH
Q ss_conf             0479999999
Q 537021.9.peg.2    2 AHDLYETIGT   11 (38)
Q Consensus         2 ahdlyetigt   11 (38)
                      |..||+|-|-
T Consensus        22 af~LydTyGf   31 (71)
T 2ztg_A           22 LIELYDSHGI   31 (71)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHCCC
T ss_conf             8758750698


No 10 
>>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, nucleotide-binding, amino acid-binding, acetylation; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* (A:369-441)
Probab=2.99  E-value=3.9e+02  Score=11.34  Aligned_cols=9  Identities=56%  Similarity=0.921  Sum_probs=0.0

Q ss_pred             CHHHHHHHH
Q ss_conf             047999999
Q 537021.9.peg.2    2 AHDLYETIG   10 (38)
Q Consensus         2 ahdlyetig   10 (38)
                      +..||+|.|
T Consensus        26 ~f~LydTyG   34 (73)
T 3hy0_A           26 AFRLYDTYG   34 (73)
T ss_dssp             HHHHHHHHC
T ss_pred             HEEEECCCC
T ss_conf             300311789


Done!