Query 537021.9.peg.298_1 Match_columns 38 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 15:58:23 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_298.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1dtc_A Acetyl-delta-toxin; NM 31.2 34 0.001 16.6 2.4 16 1-16 1-16 (26) 2 >1hbn_B Methyl-coenzyme M redu 6.2 2.3E+02 0.0068 12.5 2.8 21 11-31 33-61 (62) 3 >1dt9_A ERF1, protein (eukaryo 5.2 1.9E+02 0.0057 12.9 0.4 21 8-28 15-35 (102) 4 >3f3f_C Nucleoporin NUP85; str 5.2 2.2E+02 0.0064 12.6 0.6 22 2-25 41-62 (76) 5 >1eci_B Ectatomin; pore-formin 4.7 2.5E+02 0.0073 12.3 0.6 10 10-19 22-31 (34) 6 >1xou_A ESPA; coiled coil, hel 3.8 3.5E+02 0.01 11.6 3.1 21 10-30 158-178 (192) 7 >3ibv_A Exportin-T; karyopheri 3.6 3.6E+02 0.011 11.5 1.4 11 5-15 92-102 (208) 8 >1oks_A RNA polymerase alpha s 3.5 3.8E+02 0.011 11.4 1.7 10 19-28 4-13 (56) 9 >2ztg_A Alanyl-tRNA synthetase 3.4 3.4E+02 0.01 11.6 0.4 10 2-11 22-31 (71) 10 >3hy0_A Alanyl-tRNA synthetase 3.0 3.9E+02 0.012 11.3 0.4 9 2-10 26-34 (73) No 1 >>1dtc_A Acetyl-delta-toxin; NMR {Staphylococcus aureus} (A:) Probab=31.21 E-value=34 Score=16.58 Aligned_cols=16 Identities=50% Similarity=0.740 Sum_probs=13.3 Q ss_pred CCHHHHHHHHHHHHHH Q ss_conf 9047999999999998 Q 537021.9.peg.2 1 MAHDLYETIGTIQKMI 16 (38) Q Consensus 1 mahdlyetigtiqkmi 16 (38) ||.|...|||..-|-| T Consensus 1 ma~diistigdlvkwi 16 (26) T 1dtc_A 1 MAQDIISTIGDLVKWI 16 (26) T ss_dssp CHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHH T ss_conf 9078999999999999 No 2 >>1hbn_B Methyl-coenzyme M reductase I beta subunit; methanogenesis, biological methanogenesis, NI-enzyme, oxidoreductase; HET: MHS AGM MGN F43 TP7; 1.16A {Methanothermobacterthermautotrophicus} (B:1-43,B:424-442) Probab=6.18 E-value=2.3e+02 Score=12.48 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=11.6 Q ss_pred HHHHHHH--------HHHHHHHHHHHHHH Q ss_conf 9999987--------79999999997753 Q 537021.9.peg.2 11 TIQKMIK--------TKYVVSSLIKSLNE 31 (38) Q Consensus 11 tiqkmik--------tkyvvsslikslne 31 (38) +||+||+ -||||..--.--|| T Consensus 33 aIkkiI~~tKR~~~~~~~~~~~~~~~~~~ 61 (62) T 1hbn_B 33 AIKSIVQGIKRFREPLKYVVEAAAEIKNE 61 (62) T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 79999986557653799999999886326 No 3 >>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} (A:30-131) Probab=5.19 E-value=1.9e+02 Score=12.86 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=13.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999998779999999997 Q 537021.9.peg.2 8 TIGTIQKMIKTKYVVSSLIKS 28 (38) Q Consensus 8 tigtiqkmiktkyvvssliks 28 (38) .|+.+.+|....|-..|-||| T Consensus 15 ~I~~v~~~L~~E~~~AsNIKs 35 (102) T 1dt9_A 15 QISRVAKMLADEFGTASNIKS 35 (102) T ss_dssp CHHHHHHHHHHHHHHHTTCCC T ss_pred CHHHHHHHHHHHHHHHHHHHH T ss_conf 657999999999867630334 No 4 >>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleoporin complex, nuclear pore complex, macromolecular assembly; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B (C:495-570) Probab=5.18 E-value=2.2e+02 Score=12.62 Aligned_cols=22 Identities=27% Similarity=0.738 Sum_probs=12.7 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 047999999999998779999999 Q 537021.9.peg.2 2 AHDLYETIGTIQKMIKTKYVVSSL 25 (38) Q Consensus 2 ahdlyetigtiqkmiktkyvvssl 25 (38) |..+|-+.| ||++...|+..+| T Consensus 41 A~~iy~~~G--~k~l~~g~~~Eal 62 (76) T 3f3f_C 41 AKEIYTTLG--NQMLSAHNIIESI 62 (76) T ss_dssp HHHHHHHHH--C------------ T ss_pred HHHHHHHHH--HHHHHCCCHHHHH T ss_conf 999999999--9999778799999 No 5 >>1eci_B Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} (B:) Probab=4.66 E-value=2.5e+02 Score=12.33 Aligned_cols=10 Identities=60% Similarity=0.893 Sum_probs=4.7 Q ss_pred HHHHHHHHHH Q ss_conf 9999998779 Q 537021.9.peg.2 10 GTIQKMIKTK 19 (38) Q Consensus 10 gtiqkmiktk 19 (38) |.|..|||.| T Consensus 22 gsiatmikkk 31 (34) T 1eci_B 22 GSIATMIKKK 31 (34) T ss_dssp TTHHHHHHHH T ss_pred CHHHHHHHHH T ss_conf 1599999885 No 6 >>1xou_A ESPA; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} (A:) Probab=3.80 E-value=3.5e+02 Score=11.60 Aligned_cols=21 Identities=19% Similarity=0.108 Sum_probs=16.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999877999999999775 Q 537021.9.peg.2 10 GTIQKMIKTKYVVSSLIKSLN 30 (38) Q Consensus 10 gtiqkmiktkyvvssliksln 30 (38) =.||||..+--+.-|++.++- T Consensus 158 LqlQk~mQtyN~~vs~~sslq 178 (192) T 1xou_A 158 LEIQQXSNTLNLLTSARSDXQ 178 (192) T ss_dssp HHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999998999 No 7 >>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* (A:528-735) Probab=3.64 E-value=3.6e+02 Score=11.52 Aligned_cols=11 Identities=36% Similarity=0.742 Sum_probs=8.9 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999999 Q 537021.9.peg.2 5 LYETIGTIQKM 15 (38) Q Consensus 5 lyetigtiqkm 15 (38) |||++|.+--+ T Consensus 92 LFEa~G~Lis~ 102 (208) T 3ibv_A 92 LFETVGVLISS 102 (208) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999985 No 8 >>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} (A:) Probab=3.46 E-value=3.8e+02 Score=11.43 Aligned_cols=10 Identities=50% Similarity=0.717 Sum_probs=4.9 Q ss_pred HHHHHHHHHH Q ss_conf 9999999997 Q 537021.9.peg.2 19 KYVVSSLIKS 28 (38) Q Consensus 19 kyvvssliks 28 (38) +-|..|+||| T Consensus 4 rsVirSiIkS 13 (56) T 1oks_A 4 RSVIRSIIKS 13 (56) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 8999999998 No 9 >>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} (A:424-494) Probab=3.35 E-value=3.4e+02 Score=11.64 Aligned_cols=10 Identities=30% Similarity=0.637 Sum_probs=5.7 Q ss_pred CHHHHHHHHH Q ss_conf 0479999999 Q 537021.9.peg.2 2 AHDLYETIGT 11 (38) Q Consensus 2 ahdlyetigt 11 (38) |..||+|-|- T Consensus 22 af~LydTyGf 31 (71) T 2ztg_A 22 LIELYDSHGI 31 (71) T ss_dssp HHHHHHHHCC T ss_pred HHHHHHHCCC T ss_conf 8758750698 No 10 >>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, nucleotide-binding, amino acid-binding, acetylation; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* (A:369-441) Probab=2.99 E-value=3.9e+02 Score=11.34 Aligned_cols=9 Identities=56% Similarity=0.921 Sum_probs=0.0 Q ss_pred CHHHHHHHH Q ss_conf 047999999 Q 537021.9.peg.2 2 AHDLYETIG 10 (38) Q Consensus 2 ahdlyetig 10 (38) +..||+|.| T Consensus 26 ~f~LydTyG 34 (73) T 3hy0_A 26 AFRLYDTYG 34 (73) T ss_dssp HHHHHHHHC T ss_pred HEEEECCCC T ss_conf 300311789 Done!