Query 537021.9.peg.33_1
Match_columns 100
No_of_seqs 109 out of 961
Neff 6.6
Searched_HMMs 39220
Date Sun May 22 16:43:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_33.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13581 D-3-phosphoglycerate 100.0 1.9E-34 5E-39 202.4 12.3 97 1-97 428-524 (524)
2 cd04903 ACT_LSD C-terminal ACT 99.9 3.7E-24 9.4E-29 148.3 8.7 71 25-95 1-71 (71)
3 cd04902 ACT_3PGDH-xct C-termin 99.9 6.5E-24 1.7E-28 147.0 7.6 73 25-97 1-73 (73)
4 cd04879 ACT_3PGDH-like ACT_3PG 99.9 3E-22 7.6E-27 138.2 7.5 71 25-95 1-71 (71)
5 cd04901 ACT_3PGDH C-terminal A 99.8 6.6E-20 1.7E-24 125.8 7.5 69 25-95 1-69 (69)
6 PRK11790 D-3-phosphoglycerate 99.8 2.2E-18 5.5E-23 117.8 7.9 91 3-95 318-408 (409)
7 TIGR01327 PGDH D-3-phosphoglyc 99.7 6.9E-18 1.8E-22 115.2 9.4 97 1-97 438-535 (535)
8 TIGR00719 sda_beta L-serine de 99.7 2.2E-16 5.6E-21 107.3 6.7 82 2-83 127-208 (208)
9 LOAD_ACT consensus 98.9 5.4E-09 1.4E-13 68.3 7.3 71 25-95 1-74 (76)
10 cd04883 ACT_AcuB C-terminal AC 98.6 4.8E-07 1.2E-11 58.0 8.5 63 24-86 2-64 (72)
11 PRK08577 hypothetical protein; 98.5 1E-06 2.7E-11 56.2 8.3 75 24-98 57-135 (135)
12 pfam01842 ACT ACT domain. This 98.5 7.6E-07 1.9E-11 57.0 7.4 65 24-88 1-66 (66)
13 cd04874 ACT_Af1403 N-terminal 98.4 2.3E-06 5.8E-11 54.5 9.6 68 26-94 3-71 (72)
14 cd04878 ACT_AHAS N-terminal AC 98.4 1.8E-06 4.5E-11 55.0 8.5 70 24-93 1-72 (72)
15 cd04882 ACT_Bt0572_2 C-termina 98.4 1.7E-06 4.4E-11 55.1 7.8 58 26-85 2-59 (65)
16 cd04876 ACT_RelA-SpoT ACT dom 98.4 1.6E-06 4E-11 55.3 7.4 65 28-93 3-70 (71)
17 PRK06737 acetolactate synthase 98.3 4.9E-06 1.2E-10 52.7 8.3 72 23-94 2-75 (76)
18 COG1760 SdaA L-serine deaminas 98.3 1.2E-09 3E-14 71.8 -10.8 93 3-97 161-254 (262)
19 CHL00100 ilvH acetohydroxyacid 98.2 7.7E-06 2E-10 51.7 8.4 74 23-96 2-77 (172)
20 PRK10872 relA GDP/GTP pyrophos 98.2 5.7E-06 1.4E-10 52.4 7.6 72 25-96 668-742 (743)
21 PRK08178 acetolactate synthase 98.2 1.7E-05 4.3E-10 49.9 9.2 76 21-96 6-82 (96)
22 PRK11895 ilvH acetolactate syn 98.2 1.3E-05 3.4E-10 50.4 8.4 74 23-96 2-77 (161)
23 COG2150 Predicted regulator of 98.2 1.1E-05 2.9E-10 50.8 7.9 68 26-93 98-165 (167)
24 cd04881 ACT_HSDH-Hom ACT_HSDH_ 98.2 8.2E-06 2.1E-10 51.5 7.1 72 26-97 3-78 (79)
25 cd04888 ACT_PheB-BS C-terminal 98.1 3E-05 7.6E-10 48.6 9.2 70 25-95 2-75 (76)
26 PRK04435 hypothetical protein; 97.9 0.00019 4.8E-09 44.4 9.9 74 24-98 69-146 (146)
27 cd04872 ACT_1ZPV ACT domain pr 97.9 2.8E-05 7.2E-10 48.7 5.7 60 25-86 3-66 (88)
28 PRK11092 bifunctional (p)ppGpp 97.9 7.5E-05 1.9E-09 46.4 7.7 70 25-95 628-700 (702)
29 COG1707 ACT domain-containing 97.9 0.0001 2.6E-09 45.7 8.0 70 26-95 5-75 (218)
30 PRK10820 DNA-binding transcrip 97.8 6.7E-05 1.7E-09 46.7 6.9 71 25-97 2-72 (513)
31 PRK00194 hypothetical protein; 97.8 3.7E-05 9.5E-10 48.1 5.6 61 24-86 4-68 (90)
32 cd04889 ACT_PDH-BS-like C-term 97.8 7.1E-05 1.8E-09 46.6 6.7 54 27-83 2-55 (56)
33 cd04909 ACT_PDH-BS C-terminal 97.8 8.2E-05 2.1E-09 46.3 6.3 52 24-75 2-53 (69)
34 PRK06349 homoserine dehydrogen 97.7 0.0001 2.6E-09 45.7 6.4 76 22-98 351-430 (432)
35 PRK13011 formyltetrahydrofolat 97.7 7.4E-05 1.9E-09 46.5 5.2 68 18-85 2-73 (287)
36 cd04887 ACT_MalLac-Enz ACT_Mal 97.7 0.00048 1.2E-08 42.2 9.1 68 25-93 1-71 (74)
37 cd04875 ACT_F4HF-DF N-terminal 97.7 0.00015 3.8E-09 44.9 6.5 51 25-75 1-51 (74)
38 PRK06545 prephenate dehydrogen 97.5 0.00023 5.9E-09 43.9 5.9 49 13-61 278-326 (357)
39 cd04869 ACT_GcvR_2 ACT domains 97.5 0.00021 5.3E-09 44.1 5.4 61 26-86 2-69 (81)
40 COG0317 SpoT Guanosine polypho 97.5 0.00055 1.4E-08 41.9 7.5 71 24-95 628-701 (701)
41 PRK13562 acetolactate synthase 97.5 0.00062 1.6E-08 41.6 7.7 74 23-96 2-78 (84)
42 cd02116 ACT ACT domains are co 97.5 0.00028 7E-09 43.5 5.6 57 27-83 2-59 (60)
43 cd04877 ACT_TyrR N-terminal AC 97.4 0.0005 1.3E-08 42.1 6.3 71 25-97 2-72 (74)
44 COG0440 IlvH Acetolactate synt 97.4 0.0011 2.8E-08 40.3 7.5 76 21-96 2-79 (163)
45 COG0788 PurU Formyltetrahydrof 97.3 0.00071 1.8E-08 41.3 6.5 66 21-86 5-74 (287)
46 TIGR00655 PurU formyltetrahydr 97.3 0.00058 1.5E-08 41.8 5.3 63 25-87 2-77 (294)
47 PRK06027 purU formyltetrahydro 97.2 0.00087 2.2E-08 40.9 5.7 64 22-85 4-71 (285)
48 cd04926 ACT_ACR_4 C-terminal 97.2 0.003 7.7E-08 38.0 8.5 59 25-85 3-65 (72)
49 PRK11589 gcvR glycine cleavage 97.2 0.00054 1.4E-08 41.9 4.5 53 24-76 96-150 (183)
50 cd04905 ACT_CM-PDT C-terminal 97.2 0.0044 1.1E-07 37.1 9.1 62 24-86 2-69 (80)
51 PRK13010 purU formyltetrahydro 97.2 0.0012 3.1E-08 40.1 6.2 53 22-74 8-60 (289)
52 cd04899 ACT_ACR-UUR-like_2 C-t 97.0 0.0059 1.5E-07 36.5 8.2 59 25-85 2-64 (70)
53 COG0077 PheA Prephenate dehydr 97.0 0.0071 1.8E-07 36.0 8.5 67 21-88 192-264 (279)
54 KOG2663 consensus 96.9 0.0012 3E-08 40.2 4.2 74 20-93 74-149 (309)
55 PRK03059 PII uridylyl-transfer 96.9 0.0074 1.9E-07 35.9 8.3 49 22-71 678-726 (857)
56 cd04900 ACT_UUR-like_1 ACT dom 96.8 0.013 3.3E-07 34.7 8.9 62 23-85 1-67 (73)
57 cd04908 ACT_Bt0572_1 N-termina 96.8 0.0041 1E-07 37.3 6.1 58 26-87 4-61 (66)
58 PRK05007 PII uridylyl-transfer 96.8 0.01 2.6E-07 35.2 8.0 61 22-83 697-761 (881)
59 cd04873 ACT_UUR-ACR-like ACT d 96.8 0.014 3.6E-07 34.5 8.5 59 25-85 2-64 (70)
60 COG3830 ACT domain-containing 96.7 0.0017 4.4E-08 39.3 3.8 51 24-76 4-54 (90)
61 cd04870 ACT_PSP_1 CT domains f 96.7 0.0055 1.4E-07 36.6 6.2 58 26-85 2-62 (75)
62 PRK00275 glnD PII uridylyl-tra 96.7 0.013 3.3E-07 34.6 8.0 49 22-71 703-751 (894)
63 cd04880 ACT_AAAH-PDT-like ACT 96.6 0.024 6.1E-07 33.3 8.8 60 26-86 2-67 (75)
64 PRK05007 PII uridylyl-transfer 96.6 0.022 5.5E-07 33.5 8.6 63 21-85 803-869 (881)
65 COG4747 ACT domain-containing 96.6 0.0057 1.5E-07 36.5 5.6 50 23-73 69-118 (142)
66 PRK04374 PII uridylyl-transfer 96.5 0.017 4.4E-07 34.0 7.9 49 22-71 689-737 (869)
67 PRK01759 glnD PII uridylyl-tra 96.5 0.019 4.8E-07 33.8 7.7 51 20-71 682-732 (862)
68 COG2716 GcvR Glycine cleavage 96.4 0.0043 1.1E-07 37.2 3.9 43 20-62 89-131 (176)
69 PRK03381 PII uridylyl-transfer 96.4 0.022 5.5E-07 33.5 7.4 49 22-72 599-647 (781)
70 cd04928 ACT_TyrKc Uncharacteri 96.3 0.011 2.8E-07 35.1 5.7 57 24-81 2-58 (68)
71 PRK11898 prephenate dehydratas 96.3 0.049 1.2E-06 31.6 9.0 64 22-86 194-264 (285)
72 cd04895 ACT_ACR_1 ACT domain-c 96.3 0.03 7.7E-07 32.7 7.8 60 25-86 3-67 (72)
73 PRK05092 PII uridylyl-transfer 96.3 0.033 8.4E-07 32.5 8.0 49 22-71 734-782 (934)
74 PRK11899 prephenate dehydratas 96.2 0.057 1.5E-06 31.3 9.1 62 24-86 195-262 (284)
75 cd04904 ACT_AAAH ACT domain of 96.2 0.043 1.1E-06 31.9 8.2 68 25-95 2-73 (74)
76 cd04925 ACT_ACR_2 ACT domain-c 96.2 0.039 1E-06 32.1 7.9 59 26-85 3-66 (74)
77 COG4492 PheB ACT domain-contai 96.2 0.055 1.4E-06 31.3 8.7 73 24-97 73-149 (150)
78 cd04913 ACT_AKii-LysC-BS-like_ 95.8 0.0071 1.8E-07 36.0 2.7 66 26-92 5-73 (75)
79 PRK10622 pheA bifunctional cho 95.7 0.094 2.4E-06 30.1 8.3 64 22-86 296-365 (386)
80 cd04886 ACT_ThrD-II-like C-ter 95.7 0.038 9.8E-07 32.2 6.2 60 27-86 2-67 (73)
81 PRK01759 glnD PII uridylyl-tra 95.7 0.15 3.9E-06 29.0 9.2 64 20-85 788-855 (862)
82 PRK11152 ilvM acetolactate syn 95.6 0.025 6.5E-07 33.1 5.1 73 22-94 2-75 (76)
83 cd04929 ACT_TPH ACT domain of 95.6 0.11 2.9E-06 29.7 8.2 61 25-85 2-65 (74)
84 PRK11589 gcvR glycine cleavage 95.4 0.038 9.8E-07 32.2 5.3 57 25-85 10-66 (183)
85 cd04931 ACT_PAH ACT domain of 95.2 0.15 3.8E-06 29.1 7.8 64 22-86 13-81 (90)
86 TIGR00119 acolac_sm acetolacta 94.9 0.062 1.6E-06 31.1 5.2 73 23-95 2-76 (205)
87 COG4747 ACT domain-containing 94.9 0.26 6.6E-06 27.8 8.4 63 26-92 6-68 (142)
88 cd04893 ACT_GcvR_1 ACT domains 94.7 0.041 1E-06 32.0 3.8 56 25-84 3-58 (77)
89 PRK03059 PII uridylyl-transfer 94.1 0.35 8.9E-06 27.1 7.5 66 18-85 782-849 (857)
90 PRK00275 glnD PII uridylyl-tra 94.1 0.49 1.2E-05 26.3 8.7 66 18-85 809-879 (894)
91 TIGR01693 UTase_glnD protein-P 93.9 0.35 8.9E-06 27.1 7.1 31 26-56 707-737 (903)
92 PRK03381 PII uridylyl-transfer 93.8 0.55 1.4E-05 26.1 8.5 66 18-85 704-773 (781)
93 PRK05092 PII uridylyl-transfer 93.8 0.55 1.4E-05 26.1 9.3 64 20-85 843-911 (934)
94 COG3283 TyrR Transcriptional r 93.4 0.18 4.5E-06 28.7 5.0 71 25-97 2-72 (511)
95 COG2061 ACT-domain-containing 93.3 0.35 8.9E-06 27.1 6.4 68 25-93 7-78 (170)
96 COG2844 GlnD UTP:GlnB (protein 93.3 0.27 6.8E-06 27.7 5.7 52 18-71 786-837 (867)
97 TIGR00691 spoT_relA RelA/SpoT 93.1 0.63 1.6E-05 25.8 7.4 71 24-94 668-741 (741)
98 PRK09977 putative Mg(2+) trans 92.7 0.84 2.2E-05 25.1 9.0 62 33-94 152-214 (215)
99 cd04884 ACT_CBS C-terminal ACT 92.3 0.6 1.5E-05 25.9 6.4 62 28-89 4-69 (72)
100 PRK08198 threonine dehydratase 92.1 0.92 2.4E-05 24.9 7.2 65 22-86 328-398 (406)
101 PRK07431 aspartate kinase; Pro 91.8 0.23 5.9E-06 28.0 3.8 57 29-85 277-335 (594)
102 TIGR01127 ilvA_1Cterm threonin 91.8 1.1 2.8E-05 24.5 7.7 61 24-85 307-370 (381)
103 PRK06382 threonine dehydratase 91.6 0.52 1.3E-05 26.2 5.5 67 21-87 322-394 (400)
104 cd04891 ACT_AK-LysC-DapG-like_ 90.8 0.53 1.4E-05 26.1 4.8 44 29-73 7-50 (61)
105 TIGR01693 UTase_glnD protein-P 90.6 0.8 2E-05 25.2 5.6 64 19-84 827-895 (903)
106 PRK08526 threonine dehydratase 89.5 1.8 4.6E-05 23.4 6.7 65 21-85 324-394 (403)
107 PRK07334 threonine dehydratase 89.3 1.9 4.8E-05 23.3 7.0 65 22-86 322-392 (399)
108 PRK07431 aspartate kinase; Pro 88.2 0.79 2E-05 25.2 4.1 74 14-89 432-512 (594)
109 cd04936 ACT_AKii-LysC-BS-like_ 87.8 1 2.6E-05 24.7 4.5 49 30-84 10-58 (63)
110 cd04921 ACT_AKi-HSDH-ThrA-like 87.7 1.3 3.3E-05 24.1 4.9 50 30-83 11-60 (80)
111 cd04915 ACT_AK-Ectoine_2 ACT d 86.7 0.86 2.2E-05 25.0 3.6 39 28-69 9-47 (66)
112 cd04892 ACT_AK-like_2 ACT doma 86.7 0.98 2.5E-05 24.7 3.9 50 31-84 11-60 (65)
113 cd04919 ACT_AK-Hom3_2 ACT doma 86.4 1.1 2.8E-05 24.5 4.0 50 30-83 11-60 (66)
114 cd04924 ACT_AK-Arch_2 ACT doma 85.8 1.2 2.9E-05 24.4 3.9 50 31-84 12-61 (66)
115 cd04916 ACT_AKiii-YclM-BS_2 AC 84.8 1.3 3.4E-05 24.0 3.8 51 30-84 11-61 (66)
116 cd04923 ACT_AK-LysC-DapG-like_ 84.3 1.9 4.8E-05 23.2 4.4 48 30-83 10-57 (63)
117 TIGR00657 asp_kinases aspartat 84.2 3.5 8.9E-05 21.8 5.7 57 26-82 342-411 (504)
118 PRK06635 aspartate kinase; Rev 84.1 1.4 3.6E-05 23.9 3.6 61 29-89 268-330 (402)
119 cd04871 ACT_PSP_2 ACT domains 82.8 4.2 0.00011 21.4 5.9 58 27-86 4-72 (84)
120 COG3978 Acetolactate synthase 82.7 4.3 0.00011 21.4 7.8 76 23-98 3-79 (86)
121 pfam07881 Fucose_iso_N1 L-fuco 82.0 3.8 9.7E-05 21.6 5.2 66 14-85 91-158 (171)
122 cd04922 ACT_AKi-HSDH-ThrA_2 AC 81.6 2.4 6E-05 22.7 4.0 50 30-83 11-60 (66)
123 cd04937 ACT_AKi-DapG-BS_2 ACT 81.2 1.8 4.6E-05 23.3 3.3 26 30-55 11-36 (64)
124 COG0527 LysC Aspartokinases [A 80.7 5 0.00013 21.0 5.4 49 32-84 319-367 (447)
125 PRK08639 threonine dehydratase 79.0 5.8 0.00015 20.7 6.7 65 22-86 333-400 (418)
126 PRK09436 thrA bifunctional asp 78.2 6.2 0.00016 20.5 6.0 26 30-55 325-350 (817)
127 PRK09034 aspartate kinase; Rev 76.1 6.5 0.00017 20.4 4.9 54 30-86 318-373 (450)
128 PRK09181 aspartate kinase; Val 75.3 4.9 0.00013 21.1 4.1 50 32-85 342-391 (476)
129 PRK08210 aspartate kinase I; R 73.5 5 0.00013 21.0 3.7 51 30-86 279-329 (405)
130 PRK08841 aspartate kinase; Val 73.1 8.6 0.00022 19.8 5.6 55 24-84 319-373 (392)
131 PRK09084 aspartate kinase III; 72.8 8.7 0.00022 19.7 6.3 57 31-90 317-379 (447)
132 cd04930 ACT_TH ACT domain of t 70.9 9.7 0.00025 19.5 5.6 63 24-86 42-107 (115)
133 PRK06291 aspartate kinase; Pro 69.3 6.8 0.00017 20.3 3.7 26 30-55 331-356 (466)
134 COG1197 Mfd Transcription-repa 68.3 10 0.00026 19.4 4.4 59 21-89 872-930 (1139)
135 PRK10689 transcription-repair 67.2 11 0.00029 19.1 4.5 58 21-88 878-935 (1148)
136 cd04927 ACT_ACR-like_2 Second 66.8 12 0.00031 19.0 7.0 62 25-86 2-70 (76)
137 cd04918 ACT_AK1-AT_2 ACT domai 66.3 9.3 0.00024 19.6 3.9 44 29-75 9-52 (65)
138 TIGR00656 asp_kin_monofn aspar 65.9 12 0.0003 19.0 4.3 56 29-84 336-392 (480)
139 cd04935 ACT_AKiii-DAPDC_1 ACT 64.7 10 0.00026 19.4 3.8 53 32-87 13-69 (75)
140 cd04868 ACT_AK-like ACT domain 62.8 6 0.00015 20.6 2.4 47 32-82 12-58 (60)
141 TIGR01268 Phe4hydrox_tetr phen 61.9 15 0.00038 18.5 6.9 71 15-85 10-89 (445)
142 cd04912 ACT_AKiii-LysC-EC-like 59.5 17 0.00042 18.3 4.5 55 32-89 13-71 (75)
143 cd04932 ACT_AKiii-LysC-EC_1 AC 56.4 19 0.00048 18.0 4.1 55 32-89 13-71 (75)
144 pfam03927 NapD NapD protein. U 56.0 19 0.00049 17.9 6.1 63 32-98 11-74 (78)
145 pfam06897 DUF1269 Protein of u 50.5 13 0.00034 18.8 2.4 52 37-88 28-80 (102)
146 pfam05088 Bac_GDH Bacterial NA 46.5 28 0.0007 17.1 8.8 64 22-85 15-97 (1526)
147 TIGR00580 mfd transcription-re 46.0 5.4 0.00014 20.9 -0.1 60 21-90 790-849 (997)
148 COG3603 Uncharacterized conser 42.1 15 0.00039 18.5 1.7 26 31-56 74-99 (128)
149 cd04906 ACT_ThrD-I_1 First of 41.5 33 0.00085 16.7 6.8 59 25-86 3-65 (85)
150 COG2177 FtsX Cell division pro 38.7 23 0.00059 17.5 2.2 32 64-95 62-93 (297)
151 cd04907 ACT_ThrD-I_2 Second of 38.3 38 0.00096 16.4 6.1 60 25-86 3-64 (81)
152 PRK01002 nickel responsive reg 38.1 38 0.00097 16.4 7.9 73 23-97 58-133 (141)
153 PRK02264 N(5),N(10)-methenylte 37.4 39 0.00099 16.3 3.2 63 26-89 77-159 (318)
154 pfam00585 Thr_dehydrat_C C-ter 37.0 40 0.001 16.3 6.0 62 23-86 10-74 (91)
155 TIGR03120 one_C_mch methenylte 36.5 40 0.001 16.2 3.3 63 26-89 75-157 (312)
156 PRK10553 assembly protein for 34.8 43 0.0011 16.1 6.3 64 31-98 13-78 (87)
157 cd00545 MCH Methenyltetrahydro 34.5 44 0.0011 16.1 3.2 65 24-89 73-157 (312)
158 pfam02289 MCH Cyclohydrolase ( 32.6 47 0.0012 15.9 3.3 66 23-89 72-157 (312)
159 PRK08818 prephenate dehydrogen 31.2 50 0.0013 15.8 5.4 55 25-80 298-352 (373)
160 TIGR01270 Trp_5_monoox tryptop 31.1 50 0.0013 15.7 6.5 74 22-95 44-130 (499)
161 KOG2797 consensus 30.9 50 0.0013 15.7 3.8 36 22-57 280-315 (377)
162 PRK05925 aspartate kinase; Pro 29.3 54 0.0014 15.6 3.6 44 35-83 313-356 (440)
163 TIGR02282 MltB lytic murein tr 28.2 9.4 0.00024 19.6 -1.2 72 11-85 184-261 (323)
164 KOG1250 consensus 27.7 58 0.0015 15.4 3.5 61 25-85 375-436 (457)
165 PRK08744 consensus 26.7 60 0.0015 15.3 8.0 71 24-95 1112-1189(1195)
166 cd04885 ACT_ThrD-I Tandem C-te 26.7 60 0.0015 15.3 5.3 57 28-86 3-62 (68)
167 cd04914 ACT_AKi-DapG-BS_1 ACT 25.2 51 0.0013 15.7 2.1 51 35-88 14-64 (67)
168 PRK11679 lipoprotein; Provisio 23.6 69 0.0018 15.0 3.9 46 10-55 90-135 (345)
169 PRK09466 metL bifunctional asp 23.6 70 0.0018 15.0 5.1 54 30-87 327-380 (810)
170 PRK05406 LamB/YcsF family prot 22.7 72 0.0018 14.9 3.4 40 7-49 204-246 (246)
171 COG4803 Predicted membrane pro 22.2 48 0.0012 15.8 1.5 56 37-93 89-146 (170)
172 cd00292 EF1B Elongation factor 22.1 75 0.0019 14.8 5.3 61 37-98 23-86 (88)
173 cd04890 ACT_AK-like_1 ACT doma 21.4 77 0.002 14.7 4.2 46 32-83 12-57 (62)
174 pfam11110 Phage_hub_GP28 Basep 20.8 80 0.002 14.7 3.9 45 2-46 48-103 (151)
No 1
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-34 Score=202.45 Aligned_cols=97 Identities=36% Similarity=0.574 Sum_probs=95.2
Q ss_pred CCCCCEEEEEEECCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHH
Q ss_conf 95587378999799899765798399999828786688999899736996322774214789818999994788998999
Q 537021.9.peg.3 1 VFSDGKPRFIKIQEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVL 80 (100)
Q Consensus 1 vfg~g~~riv~i~g~~v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl 80 (100)
+||++.+|||+||||++|+.|++|+|+++|.|+||+||+||++||+++|||++|+++|+.+||.|+|++.+|+++|++++
T Consensus 428 vf~~~~pRIV~I~g~~vd~~p~G~mL~~~n~D~PGvIG~VGtiLG~~~INIA~m~lgR~~~gg~Ai~vl~vD~~v~~evl 507 (524)
T PRK13581 428 VFGDGEPRIVEINGFRVDAKPEGHMLVIRNRDRPGVIGKIGTLLGEHGINIASMQLGRDEAGGEALMVLSVDDPVPDEVL 507 (524)
T ss_pred EECCCEEEEEEECCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCHHCEECCCCCCCEEEEEEECCCCCCHHHH
T ss_conf 93599068999999999985467689997078697143988888656989233574578899747999987999999999
Q ss_pred HHHHCCCCEEEEEEEEE
Q ss_conf 99864988299999997
Q 537021.9.peg.3 81 EKLSVNVTIRFVKQFEF 97 (100)
Q Consensus 81 ~~i~~~~~v~~vr~i~~ 97 (100)
++|+++++|.+|+++++
T Consensus 508 ~~l~~~~~I~~v~~v~l 524 (524)
T PRK13581 508 EELKALPGILSAKAVEL 524 (524)
T ss_pred HHHHCCCCCEEEEEEEC
T ss_conf 99866888428999759
No 2
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.91 E-value=3.7e-24 Score=148.27 Aligned_cols=71 Identities=24% Similarity=0.356 Sum_probs=69.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf 99999828786688999899736996322774214789818999994788998999998649882999999
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i 95 (100)
||++.|+|+|||||+|+++||+++|||++|+++|+++|+.|+|++++|+++|++++++|+++|+|.+||++
T Consensus 1 TL~i~~~D~PG~Ig~i~~~L~~~~INIa~m~v~R~~~g~~A~~ii~~D~~v~~~~l~~i~~~~~I~~v~~I 71 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVIEEIKKIPNIHQVILI 71 (71)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCHHEEEECCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEC
T ss_conf 98999448699199999999865968036187515899789999992899999999999759995699979
No 3
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=99.90 E-value=6.5e-24 Score=146.95 Aligned_cols=73 Identities=37% Similarity=0.535 Sum_probs=71.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 9999982878668899989973699632277421478981899999478899899999864988299999997
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEF 97 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i~~ 97 (100)
+|++.|+|+||+||+||++||+++||||+|+++|+++|+.|+|++++|+++|++++++|+++|+|.+||++++
T Consensus 1 ~Lii~~~D~PGvIg~v~~~Lg~~~INIa~m~l~R~~~g~~A~~vi~vD~~v~~~~l~~i~~~~~V~~v~~i~L 73 (73)
T cd04902 1 MLVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPVPDEVLEELRALPGILSAKVVEL 73 (73)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCEEEEEEC
T ss_conf 9899816989928999999987097788843257689987899999089999999999975989528999869
No 4
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=99.87 E-value=3e-22 Score=138.21 Aligned_cols=71 Identities=37% Similarity=0.498 Sum_probs=69.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf 99999828786688999899736996322774214789818999994788998999998649882999999
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i 95 (100)
+|++.|+|+||+||+|+++||+++|||++|+++|+.+|+.|+|++++|+++|++++++|+++|++.+||++
T Consensus 1 ~L~v~~~D~PGvi~~I~~~L~~~~iNI~~m~l~r~~~g~~A~~ii~vD~~v~~~~l~~i~~~~~v~~vr~i 71 (71)
T cd04879 1 RLLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSPVPEEVLEELKALPGIIRVRLI 71 (71)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEC
T ss_conf 98899439799899999999985978899641236799758999990898999999999769980899979
No 5
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=99.81 E-value=6.6e-20 Score=125.82 Aligned_cols=69 Identities=25% Similarity=0.271 Sum_probs=65.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf 99999828786688999899736996322774214789818999994788998999998649882999999
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i 95 (100)
++++.|+|+|||||+|+++||++|+||++|++ +++|+.||+++++|++++++++++|+++|++.++|++
T Consensus 1 Ri~~ih~NvPG~l~~I~~il~~~~iNI~~m~~--~srg~~ay~vidvd~~~~~~~~~~l~~i~gvi~vR~i 69 (69)
T cd04901 1 RILHIHKNVPGVLGQINTILAEHNINIAAQYL--QTRGEIGYVVIDIDSEVSEELLEALRAIPGTIRVRLL 69 (69)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCHHHHCC--CCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEC
T ss_conf 96687169886899999999985999799724--2689768999990798989999999729985999769
No 6
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.76 E-value=2.2e-18 Score=117.85 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=82.0
Q ss_pred CCCEEEEEEECCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHH
Q ss_conf 58737899979989976579839999982878668899989973699632277421478981899999478899899999
Q 537021.9.peg.3 3 SDGKPRFIKIQEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEK 82 (100)
Q Consensus 3 g~g~~riv~i~g~~v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~ 82 (100)
.|....-|+++...+......++|++.|+|+|||+++|+++|+++++||.+|.. +++++.||+++++|++++++++++
T Consensus 318 ~G~i~nsVN~P~~~~~~~~~~~Ri~~~h~N~Pg~l~~i~~~l~~~~~NI~~~~n--~s~~~~aY~i~D~~~~~~~~~~~~ 395 (409)
T PRK11790 318 NGSTLSAVNFPEVSLPEHPGGHRLLHIHENRPGVLTAINQIFAEQGINIAAQYL--QTDAEIGYVVIDVDADDSEEALEA 395 (409)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHH--CCCCCEEEEEEECCCCCCHHHHHH
T ss_conf 698114402477567778887069998079875899999999876999889862--067765499997888885999999
Q ss_pred HHCCCCEEEEEEE
Q ss_conf 8649882999999
Q 537021.9.peg.3 83 LSVNVTIRFVKQF 95 (100)
Q Consensus 83 i~~~~~v~~vr~i 95 (100)
|+++|++.++|.+
T Consensus 396 l~~i~~vi~vR~l 408 (409)
T PRK11790 396 LKAIPGTIRARLL 408 (409)
T ss_pred HHHCCCEEEEEEE
T ss_conf 9848988999860
No 7
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase; InterPro: IPR006236 This group of sequences represent the long form of D-3-phosphoglycerate dehydrogenase, they include the serA gene of one pathway of serine biosynthesis. Shorter forms not in this group include SerA from Escherichia coli. ; GO: 0004617 phosphoglycerate dehydrogenase activity, 0006564 L-serine biosynthetic process.
Probab=99.75 E-value=6.9e-18 Score=115.20 Aligned_cols=97 Identities=34% Similarity=0.548 Sum_probs=93.7
Q ss_pred CCCCCEEEEEEECCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECC-CCCCEEEEEEEECCCCCHHH
Q ss_conf 95587378999799899765798399999828786688999899736996322774214-78981899999478899899
Q 537021.9.peg.3 1 VFSDGKPRFIKIQEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRS-QSTEHAISFLCIDGSILNSV 79 (100)
Q Consensus 1 vfg~g~~riv~i~g~~v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~-~~g~~A~~ii~vD~~i~~~v 79 (100)
+|+++.+|++++++|.+++.|+++.+++.|.|+||++|+++++|+++++||+.|+++|. ..++.+++.+.+|.++++++
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~d~pg~~g~~g~~~g~~~~~~~~~~~g~~~~~gg~~~~~~~~d~~~~~~~ 517 (535)
T TIGR01327 438 VFGGGGPRITEIDGFEVDLEPEGYLLIILHLDKPGVIGKVGSLLGEAGINIAGFQLGRKDEKGGDALLLLSLDDPLPDEV 517 (535)
T ss_pred EECCCCCEEEEECCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECCCCCHHH
T ss_conf 21476503676415033003575178985067652145566664103662000111544456762378886066677579
Q ss_pred HHHHHCCCCEEEEEEEEE
Q ss_conf 999864988299999997
Q 537021.9.peg.3 80 LEKLSVNVTIRFVKQFEF 97 (100)
Q Consensus 80 l~~i~~~~~v~~vr~i~~ 97 (100)
++++++++++..+.++.+
T Consensus 518 ~~~~~~~~~~~~~~~~~~ 535 (535)
T TIGR01327 518 LEELKELPGILDAKLVDL 535 (535)
T ss_pred HHHHHHCCHHHHEEEEEC
T ss_conf 999863010221124409
No 8
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit; InterPro: IPR004643 L-serine dehydratase, also called serine deaminase, catalyses the conversion of L-serine and water to pyruvate and ammonia during gluconeogenesis from serine. The enzyme forms a heterooctamer of four alpha chains and four beta chains. This family describes the beta chain of an iron-sulphur-dependent L-serine dehydratase of the Firmicutes and Deinococcus radiodurans. A fairly deep split in a UPGMA tree separates members of this family of beta chains from the homologous region of single chain forms such as found in Escherichia coli. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.; GO: 0003941 L-serine ammonia-lyase activity, 0006094 gluconeogenesis.
Probab=99.65 E-value=2.2e-16 Score=107.26 Aligned_cols=82 Identities=18% Similarity=0.398 Sum_probs=79.7
Q ss_pred CCCCEEEEEEECCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHH
Q ss_conf 55873789997998997657983999998287866889998997369963227742147898189999947889989999
Q 537021.9.peg.3 2 FSDGKPRFIKIQEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLE 81 (100)
Q Consensus 2 fg~g~~riv~i~g~~v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~ 81 (100)
-|||.++|+++||+.++++++++++++.|.|+-|+|+.|+++|+...+||..|.+.|++-+..++|-+|+|+++++.+++
T Consensus 127 IGGG~~~I~~~NG~~~~l~G~~~~IL~~~~~~~G~I~~V~~~L~~~~~N~~~l~~~~~~~~~~~~lT~E~D~~~~~~~~~ 206 (208)
T TIGR00719 127 IGGGKIKIVELNGIELRLRGEYSAILLVYNDKFGVIAYVASLLAKFEINVESLEVKKKDLTNLVLLTVEVDKNLDDSLKD 206 (208)
T ss_pred ECCCEEEEEEECCEEEEEECCCCEEEEEECCCCCEEHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCHHHHHH
T ss_conf 26873799851656999707864799986687423001024450351011134544430032899999816881057674
Q ss_pred HH
Q ss_conf 98
Q 537021.9.peg.3 82 KL 83 (100)
Q Consensus 82 ~i 83 (100)
+|
T Consensus 207 ~~ 208 (208)
T TIGR00719 207 EL 208 (208)
T ss_pred CC
T ss_conf 19
No 9
>LOAD_ACT consensus
Probab=98.90 E-value=5.4e-09 Score=68.30 Aligned_cols=71 Identities=23% Similarity=0.242 Sum_probs=62.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE---CCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf 99999828786688999899736996322774214789818999994---788998999998649882999999
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI---DGSILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v---D~~i~~~vl~~i~~~~~v~~vr~i 95 (100)
.|.+..+|+||++++++++|+++|+||.++..+....++.+.+.+.+ |....+.++.++++.+++..+..+
T Consensus 1 ~l~v~~~d~pGvLa~i~~~la~~~~nI~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~v~~v~~~ 74 (76)
T LOAD_ACT 1 ILEVELEDRPGVLARVLGALAERGINIVSIEQSTSEKGGLARIVFVVDVEDDEDLEKILKELLLLEDVLKVVRV 74 (76)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCHHEEEECCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 97999957787799999999864989420670356888668899999549979999999998457887889957
No 10
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.56 E-value=4.8e-07 Score=58.01 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=57.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCC
Q ss_conf 399999828786688999899736996322774214789818999994788998999998649
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVN 86 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~ 86 (100)
..|-+.=.|+||+++.++++++++||||.++-+++..+.+..++++.++..-|..+++.|++-
T Consensus 2 SrIev~V~Dr~G~La~va~i~~~~~iNI~Sv~vyp~~~~~~~ilv~Rv~T~~p~~li~~L~~~ 64 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRRA 64 (72)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHC
T ss_conf 559999579867299999999975975899998416889858999997259969999999988
No 11
>PRK08577 hypothetical protein; Provisional
Probab=98.47 E-value=1e-06 Score=56.25 Aligned_cols=75 Identities=20% Similarity=0.244 Sum_probs=61.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEE--EEEEEECCC--CCHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf 399999828786688999899736996322774214789818--999994788--998999998649882999999974
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHA--ISFLCIDGS--ILNSVLEKLSVNVTIRFVKQFEFN 98 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A--~~ii~vD~~--i~~~vl~~i~~~~~v~~vr~i~~~ 98 (100)
.-+-+.-+|+||++|+++..||+|++||-.-.+..-++++.| ++++++... -++++.++|++++.|..|+..+++
T Consensus 57 ~ei~l~v~DrpGvLA~is~~La~h~vdil~te~~~l~r~e~ae~v~IvDvS~~~~~~~el~~~Lk~le~VkeV~i~~l~ 135 (135)
T PRK08577 57 VELELVVEDRPGVLAKISGLLAEHGVDILATECEELKRGELAECVIIVDVSKSDIDLKELEEELKALEEVKEVEIRELE 135 (135)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHCCCCEEEHHHHEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEECC
T ss_conf 9999999459756999999998748531110211000376100899998545779999999998724531489999639
No 12
>pfam01842 ACT ACT domain. This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5.
Probab=98.46 E-value=7.6e-07 Score=56.97 Aligned_cols=65 Identities=22% Similarity=0.228 Sum_probs=55.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC-CCEEEEEEEECCCCCHHHHHHHHCCCC
Q ss_conf 39999982878668899989973699632277421478-981899999478899899999864988
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS-TEHAISFLCIDGSILNSVLEKLSVNVT 88 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~-g~~A~~ii~vD~~i~~~vl~~i~~~~~ 88 (100)
..+.+...|+||+++++++.|+++|+||..++...... ....+.....+....++++++++++.+
T Consensus 1 ~~l~v~~~DrpG~l~~v~~~la~~ginI~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (66)
T pfam01842 1 TVLEVGVPDRPGLLARVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLEAALEALKKLLG 66 (66)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 969997079883799999999877999478997466787625999996675459999999987449
No 13
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.44 E-value=2.3e-06 Score=54.46 Aligned_cols=68 Identities=19% Similarity=0.247 Sum_probs=59.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC-CCHHHHHHHHCCCCEEEEEE
Q ss_conf 9999828786688999899736996322774214789818999994788-99899999864988299999
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS-ILNSVLEKLSVNVTIRFVKQ 94 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~-i~~~vl~~i~~~~~v~~vr~ 94 (100)
|.+.-+|+||++-+++++++++|.||-+-|..-.. .+.|..-++++.. =.++++++|+++|.|.+|+.
T Consensus 3 l~I~a~nk~GVL~~itgvIa~hg~NItytqqfi~~-~g~~~iY~ElE~v~d~e~Li~~L~~~~~V~eVei 71 (72)
T cd04874 3 LSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER-EGKARIYMELEGVGDIEELVEELRSLPIVREVEI 71 (72)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEC-CCEEEEEEEEECCCCHHHHHHHHHCCCCEEEEEE
T ss_conf 79995687746999887998648986999999807-9828999999679998999999877995599994
No 14
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=98.42 E-value=1.8e-06 Score=55.05 Aligned_cols=70 Identities=13% Similarity=0.330 Sum_probs=58.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC--CCHHHHHHHHCCCCEEEEE
Q ss_conf 399999828786688999899736996322774214789818999994788--9989999986498829999
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS--ILNSVLEKLSVNVTIRFVK 93 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~--i~~~vl~~i~~~~~v~~vr 93 (100)
|+|.+.=+|+||++++++++|+..|+||.++.++.....+..-|.+.+++. .-+.+...|.++.+|.+|.
T Consensus 1 htisvlveN~pGvL~Rit~lF~rRg~NI~Sl~v~~te~~~~sR~tivv~~~~~~i~qi~kQL~KlidVi~V~ 72 (72)
T cd04878 1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKVS 72 (72)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEC
T ss_conf 979999977878999999998607855678998613799848999999788899999999985776879959
No 15
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.39 E-value=1.7e-06 Score=55.08 Aligned_cols=58 Identities=21% Similarity=0.199 Sum_probs=50.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHC
Q ss_conf 999982878668899989973699632277421478981899999478899899999864
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSV 85 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~ 85 (100)
+.+.-.|+||-++++...|+++||||.+|+..-..+++.|++++.+|. ++..++.|++
T Consensus 2 iaVev~D~pGgL~~il~~L~~~~INIeY~Yaf~~~~~~~a~lI~r~~d--~e~a~~~L~~ 59 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED--IEKAIEVLQE 59 (65)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEECC--HHHHHHHHHH
T ss_conf 899947988719999999988798879999994378976899998199--9999999998
No 16
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=98.38 E-value=1.6e-06 Score=55.33 Aligned_cols=65 Identities=20% Similarity=0.191 Sum_probs=53.7
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE---CCCCCHHHHHHHHCCCCEEEEE
Q ss_conf 99828786688999899736996322774214789818999994---7889989999986498829999
Q 537021.9.peg.3 28 IVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI---DGSILNSVLEKLSVNVTIRFVK 93 (100)
Q Consensus 28 i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v---D~~i~~~vl~~i~~~~~v~~vr 93 (100)
+.-.|+||+++.|++++++.++||.++.... .+++.+.+-+.+ |.+-=+.++.+|+++|+|.+|+
T Consensus 3 I~~~Dr~GlL~dI~~~is~~~~nI~~v~~~~-~~~~~~~~~~~v~V~d~~~L~~li~~l~~i~~V~~V~ 70 (71)
T cd04876 3 VEAIDRPGLLADITTVIAEEKINILSVNTRT-DDDGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR 70 (71)
T ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEEEE-CCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 9998377879999999998799679999997-5898699999999889999999999987799915988
No 17
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=98.29 E-value=4.9e-06 Score=52.72 Aligned_cols=72 Identities=10% Similarity=0.125 Sum_probs=61.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEE--EEECCCCCHHHHHHHHCCCCEEEEEE
Q ss_conf 8399999828786688999899736996322774214789818999--99478899899999864988299999
Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISF--LCIDGSILNSVLEKLSVNVTIRFVKQ 94 (100)
Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~i--i~vD~~i~~~vl~~i~~~~~v~~vr~ 94 (100)
.|+|-+.=+|+||++++|+.+|+..|.||.++.++.....+..-|- ...|+..-+.+.+.+.++-+|.+|+-
T Consensus 2 ~HtiSvLVen~pGVL~RVaGLFsrRGyNI~SL~Vg~te~~~~SRmTivv~gd~~~ieQi~kQL~KLidVikV~d 75 (76)
T PRK06737 2 SHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNK 75 (76)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 35899998178768898777862166571125674667998207999997781349999999850546699776
No 18
>COG1760 SdaA L-serine deaminase [Amino acid transport and metabolism]
Probab=98.26 E-value=1.2e-09 Score=71.80 Aligned_cols=93 Identities=17% Similarity=0.084 Sum_probs=86.6
Q ss_pred CCCEEEEEEECCEEEEEECCCCEEEEEECCCCCHHHH-HHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHH
Q ss_conf 5873789997998997657983999998287866889-998997369963227742147898189999947889989999
Q 537021.9.peg.3 3 SDGKPRFIKIQEINFDVDIGRLMICIVNADILGIVVF-VGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLE 81 (100)
Q Consensus 3 g~g~~riv~i~g~~v~~~~~~~~L~i~~~D~PG~I~~-v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~ 81 (100)
|++.+.+++++|+..+....-+.+.+.|. ||++.. |+..+....||+..|...|..++..+.|..+.|..+.+++++
T Consensus 161 ~maaa~l~el~Ggs~~q~~~a~~i~~~h~--lGltcdpVaglV~vpcI~rnam~a~rai~aa~~am~~~~~~~~~DevI~ 238 (262)
T COG1760 161 GMGAAALTELNGGSPEQSGNAPEIAMEHN--LGLTCDPVAGLVQVPCINRNAMGAVRAINGAKAAMAIEVDQRPLDEVIE 238 (262)
T ss_pred HHHHHHHHHHHCCCHHHHCCCHHHHHHCC--CCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 56899999982999778665358998246--8765032205111220229989999986686532211778897499999
Q ss_pred HHHCCCCEEEEEEEEE
Q ss_conf 9864988299999997
Q 537021.9.peg.3 82 KLSVNVTIRFVKQFEF 97 (100)
Q Consensus 82 ~i~~~~~v~~vr~i~~ 97 (100)
++++.+....++|.+-
T Consensus 239 tM~~~g~~m~~~y~et 254 (262)
T COG1760 239 TMYETGKDMNVKYRET 254 (262)
T ss_pred HHHHHHHHCCHHHHCC
T ss_conf 9999753343245113
No 19
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=98.24 E-value=7.7e-06 Score=51.67 Aligned_cols=74 Identities=15% Similarity=0.299 Sum_probs=61.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC--CCHHHHHHHHCCCCEEEEEEEE
Q ss_conf 8399999828786688999899736996322774214789818999994788--9989999986498829999999
Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS--ILNSVLEKLSVNVTIRFVKQFE 96 (100)
Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~--i~~~vl~~i~~~~~v~~vr~i~ 96 (100)
.|+|-+.=+|+||++++|+.+|+..|+||.++.++.....+..=|.+.++++ .-+.+...|.++..|.+|..+.
T Consensus 2 rhtisvlVeN~pGvL~RV~glFsrRgyNIeSL~V~~te~~~iSR~Tiv~~gd~~~ieQI~kQL~KLidVi~V~dlt 77 (172)
T CHL00100 2 KHTLSVLVEDEAGVLTRIAGLFARRGFNIESLAVGPAEQIGISRITMVVPGDNRTIEQLTKQLYKLVNILKVQDIT 77 (172)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 3699999977867999999998517867236997214899815999999689999999999995582702643067
No 20
>PRK10872 relA GDP/GTP pyrophosphokinase; Provisional
Probab=98.24 E-value=5.7e-06 Score=52.37 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=57.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE---CCCCCHHHHHHHHCCCCEEEEEEEE
Q ss_conf 99999828786688999899736996322774214789818999994---7889989999986498829999999
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI---DGSILNSVLEKLSVNVTIRFVKQFE 96 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v---D~~i~~~vl~~i~~~~~v~~vr~i~ 96 (100)
.|-+.-.|+||+++.|++++++.++||.++......+.+.+.+-+.+ |-.-=..++.+|+++|+|.+|+-++
T Consensus 668 ~I~I~a~Dr~GlL~dIt~vIs~~~~NI~~v~~~sd~~~~~~~i~~~ieV~d~~~L~~li~~Lr~i~~V~~V~Rv~ 742 (743)
T PRK10872 668 VVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLH 742 (743)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 999999778789999999998479983663526617898899999999788999999999975899941798288
No 21
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=98.19 E-value=1.7e-05 Score=49.88 Aligned_cols=76 Identities=9% Similarity=0.179 Sum_probs=61.8
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEC-CCCCHHHHHHHHCCCCEEEEEEEE
Q ss_conf 7983999998287866889998997369963227742147898189999947-889989999986498829999999
Q 537021.9.peg.3 21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCID-GSILNSVLEKLSVNVTIRFVKQFE 96 (100)
Q Consensus 21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD-~~i~~~vl~~i~~~~~v~~vr~i~ 96 (100)
...|.|-+.=+|+||++++|+.+|+..|.||.++.++.....+..-|.+.+. ++.-+.+...+.++.+|.+|+-+.
T Consensus 6 ~~~~vlSvlV~N~pGVL~RV~gLFsrRgyNIeSL~v~~te~~~~SRiTivv~~d~~leQi~kQL~KLidVi~V~~l~ 82 (96)
T PRK08178 6 HDNVILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDKSRIWLLVNDDQRLEQMISQIDKLEDVLKVRRNQ 82 (96)
T ss_pred CCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECC
T ss_conf 77089999995778789999888750566812078851389981089999889844899999986150769999889
No 22
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=98.17 E-value=1.3e-05 Score=50.39 Aligned_cols=74 Identities=14% Similarity=0.272 Sum_probs=60.2
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECC--CCCHHHHHHHHCCCCEEEEEEEE
Q ss_conf 839999982878668899989973699632277421478981899999478--89989999986498829999999
Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDG--SILNSVLEKLSVNVTIRFVKQFE 96 (100)
Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~--~i~~~vl~~i~~~~~v~~vr~i~ 96 (100)
.|+|.+.=+|+||++++|+.+|+..|+||.+..++.....+..=|.+.+++ ..-+.+...|.++..|.+|..+.
T Consensus 2 r~tisvlveN~~GvL~RisglFsrRg~NI~SL~v~~te~~~iSR~Tiv~~g~~~~i~QI~kQL~KLidVi~V~dlt 77 (161)
T PRK11895 2 RHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVAPTEDPGLSRITIVTSGDERVLEQITKQLNKLIDVLKVVDLT 77 (161)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 4599999977867999999998506865466665024799815999999689999999999996321403466458
No 23
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=98.17 E-value=1.1e-05 Score=50.80 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=58.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEE
Q ss_conf 99998287866889998997369963227742147898189999947889989999986498829999
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVK 93 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr 93 (100)
+...-.+.||+++.|.+.++++||+|-......-.-.+.+...+-+++++|.+++++|+++++|.++.
T Consensus 98 i~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~~iP~~li~el~~i~gVk~i~ 165 (167)
T COG2150 98 IYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTERPIPGDLIDELKKIDGVKKIS 165 (167)
T ss_pred EEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCEEEE
T ss_conf 99546777658999999998759618987257966578850899980568878999986356721487
No 24
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.16 E-value=8.2e-06 Score=51.54 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=49.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC---HHHHHHHHCCCCEEE-EEEEEE
Q ss_conf 999982878668899989973699632277421478981899999478899---899999864988299-999997
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL---NSVLEKLSVNVTIRF-VKQFEF 97 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~---~~vl~~i~~~~~v~~-vr~i~~ 97 (100)
|=+.=.|+||++++|+++|+++||+|+++.=......+.|-.++-+..... ++++++|++++.+.. ...+++
T Consensus 3 lRl~v~D~pGVla~It~i~a~~~ISI~sv~Q~~~~~~~~a~iviiTh~~~e~~i~~al~~i~~l~~v~~~~~~iRI 78 (79)
T cd04881 3 LRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGVPSVIRV 78 (79)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCHHHEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 9998078785799999999974988765151576789965589995325099999999999749863678718960
No 25
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.11 E-value=3e-05 Score=48.56 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=57.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCC----CHHHHHHHHCCCCEEEEEEE
Q ss_conf 999998287866889998997369963227742147898189999947889----98999998649882999999
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI----LNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i----~~~vl~~i~~~~~v~~vr~i 95 (100)
++.+.-+|+||+++++.+.+++++.||-+.+-+-. -.|.|-..+.+|-.- -++++++|++++||.+++.+
T Consensus 2 Tl~l~l~d~~G~LS~vL~~ia~~~~NILTInQsIP-i~g~A~vtiS~d~s~~~~~i~~ll~~l~~i~gV~~vei~ 75 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIP-IHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV 75 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCC-CCCEEEEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEE
T ss_conf 89999828875399999999976983999647887-688899999999047766899999998707992799971
No 26
>PRK04435 hypothetical protein; Provisional
Probab=97.89 E-value=0.00019 Score=44.36 Aligned_cols=74 Identities=24% Similarity=0.268 Sum_probs=60.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCC----CHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf 3999998287866889998997369963227742147898189999947889----98999998649882999999974
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI----LNSVLEKLSVNVTIRFVKQFEFN 98 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i----~~~vl~~i~~~~~v~~vr~i~~~ 98 (100)
-++.+.-+|+||+++++-+.+++++.||-+.+=+- .-.|.|-..+.+|-.- -++++++|+++++|.+++.+..+
T Consensus 69 iTl~l~l~d~~G~LS~vL~~ia~~~~NILTInQ~I-Pi~g~A~vtiSi~~s~~~~~i~~ll~~l~~~~gV~~v~i~~~e 146 (146)
T PRK04435 69 ITLSLLLEDRVGTLSKVLNVIAELGGNILTINQSI-PINGRANVTLSIDTSSMEGDIDELLEKLRNLDGVEKVELIGME 146 (146)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCC-CCCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEEEEECC
T ss_conf 99999983887579999999997699789971688-7788677999999147667999999998707991589988629
No 27
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.89 E-value=2.8e-05 Score=48.69 Aligned_cols=60 Identities=25% Similarity=0.231 Sum_probs=42.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCC---C-HHHHHHHHCC
Q ss_conf 999998287866889998997369963227742147898189999947889---9-8999998649
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI---L-NSVLEKLSVN 86 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i---~-~~vl~~i~~~ 86 (100)
.+.+.-+|+||+++.+++.|+++|+||....- .-.++.-.|++.+|-+- + +++.+++.++
T Consensus 3 VITviG~Dr~GIVa~vt~~Lae~~iNI~DisQ--ti~~g~F~M~m~vd~~~~~~~~~~l~~~L~~~ 66 (88)
T cd04872 3 VITVVGKDRVGIVAGVSTKLAELNVNILDISQ--TIMDGYFTMIMIVDISESNLDFAELQEELEEL 66 (88)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEE--EEECCEEEEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99997799887899999999986998895350--26757789999999457679999999999999
No 28
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=97.88 E-value=7.5e-05 Score=46.45 Aligned_cols=70 Identities=16% Similarity=0.173 Sum_probs=55.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE---CCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf 99999828786688999899736996322774214789818999994---788998999998649882999999
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI---DGSILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v---D~~i~~~vl~~i~~~~~v~~vr~i 95 (100)
.|-+.-.|+||+++.|++++++.++||.++.+. ...++.+.+.+.+ |..-=+.++.+|+++++|.+|+-.
T Consensus 628 ~i~I~~~dr~GlL~dIt~vIs~~~~NI~~v~~~-~~~~~~~~~~i~ieV~d~~hL~~ii~~Lr~i~~V~~V~R~ 700 (702)
T PRK11092 628 EIKVEMFNHQGALANLTAAINTTGSNIQSLNTE-EKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVSRN 700 (702)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE-ECCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 999999678788999999998579981578868-7489889999999989899999999998679992569846
No 29
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=97.85 E-value=0.0001 Score=45.74 Aligned_cols=70 Identities=21% Similarity=0.245 Sum_probs=60.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC-CCHHHHHHHHCCCCEEEEEEE
Q ss_conf 9999828786688999899736996322774214789818999994788-998999998649882999999
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS-ILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~-i~~~vl~~i~~~~~v~~vr~i 95 (100)
|-+.-.|+||++..++.+++++|.||-+.|..-...|..|...+++.+- -.++++++++..+.+..++..
T Consensus 5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~d~e~l~~~lks~d~v~ev~i~ 75 (218)
T COG1707 5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGIDDFEKLLERLKSFDYVIEVEIH 75 (218)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEEHHHHCCCCEEEEEEEEECCCCHHHHHHHHHCCCEEEEEEEC
T ss_conf 68886047528998788998618965864122330671679999960787899999986334547876200
No 30
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.84 E-value=6.7e-05 Score=46.72 Aligned_cols=71 Identities=11% Similarity=0.157 Sum_probs=62.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 9999982878668899989973699632277421478981899999478899899999864988299999997
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEF 97 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i~~ 97 (100)
+|=+.-+|+.|+...+..+|+.++||+-.|.+. ..+..-+.+-++|..--+.++.+|+.++||..|+.+.|
T Consensus 2 rlei~c~DRvGi~~dil~~l~~~~idl~~iEv~--~~~~iyl~~~~~~~~~~~~l~~~ir~i~gv~~v~~v~~ 72 (513)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEID--PIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPW 72 (513)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEC--CCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 269995155635999999999769883699972--68838997786687889999999854898543677604
No 31
>PRK00194 hypothetical protein; Validated
Probab=97.84 E-value=3.7e-05 Score=48.05 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=43.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC---CC-HHHHHHHHCC
Q ss_conf 399999828786688999899736996322774214789818999994788---99-8999998649
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS---IL-NSVLEKLSVN 86 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~---i~-~~vl~~i~~~ 86 (100)
-.+.+.-+|+||+++.|++.|+++++||.... +.-.++.-.|++.+|-+ .+ +++.++++++
T Consensus 4 avITV~G~DrpGIVa~Vt~~La~~~~NI~Dis--Qti~~g~F~M~m~vd~~~~~~~~~~l~~~L~~~ 68 (90)
T PRK00194 4 AIITVIGKDRVGIVAGVSTVLAELNVNILDIS--QTIMDGYFTMIMLVDISKSDKDFAALQEELEEL 68 (90)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEECC--CCEECCEEEEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99999879988789999999998699989551--121057468999998367679999999999999
No 32
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.81 E-value=7.1e-05 Score=46.58 Aligned_cols=54 Identities=26% Similarity=0.293 Sum_probs=42.7
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHH
Q ss_conf 999828786688999899736996322774214789818999994788998999998
Q 537021.9.peg.3 27 CIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKL 83 (100)
Q Consensus 27 ~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i 83 (100)
.+.-+|+||.++++++.|+++||||-++.+.... ++..+.-+-+|. |+...+.|
T Consensus 2 sVf~enrpG~L~~v~~~L~~~~InI~alsi~dt~-~~~GilRliv~~--p~~A~~~L 55 (56)
T cd04889 2 SVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFSD--PERAKEVL 55 (56)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCC-CCCEEEEEEECC--HHHHHHHH
T ss_conf 2782389851999999999879987997620256-773489999789--89999973
No 33
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.76 E-value=8.2e-05 Score=46.25 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=41.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCC
Q ss_conf 3999998287866889998997369963227742147898189999947889
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI 75 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i 75 (100)
|-|++.-.|+||+|+.|+++|++++|||.++..-+...+.....-+..-.+-
T Consensus 2 ydl~vdVpD~pG~Ia~vt~~L~~~~IsI~nI~Il~~RE~~~GvLri~F~~~~ 53 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE 53 (69)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEECCHH
T ss_conf 2799967999986999999999879874724876851478847999968989
No 34
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.73 E-value=0.0001 Score=45.75 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=52.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC---HHHHHHHHCCCCEEE-EEEEEE
Q ss_conf 9839999982878668899989973699632277421478981899999478899---899999864988299-999997
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL---NSVLEKLSVNVTIRF-VKQFEF 97 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~---~~vl~~i~~~~~v~~-vr~i~~ 97 (100)
..+-|-+.-.|+||++++|+++|++++|+|+++.= ....++.|-.++-+..... ..++++|.+++.|.. ...+++
T Consensus 351 s~yYLRl~V~D~PGVLa~It~ila~~~ISI~sviQ-~~~~~~~a~iViiTh~~~e~~i~~Al~eI~~L~~V~~~~~~IRI 429 (432)
T PRK06349 351 TKYYLRLLVADKPGVLAKIAAIFAENGVSIESILQ-KGADDDGAEIVVVTHETSEAALRAALAAIEALDVVVGVPSVIRI 429 (432)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEE-CCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCEEEC
T ss_conf 54699998567503799999999876986247776-48889953699991628799999999998749652578737964
Q ss_pred E
Q ss_conf 4
Q 537021.9.peg.3 98 N 98 (100)
Q Consensus 98 ~ 98 (100)
+
T Consensus 430 E 430 (432)
T PRK06349 430 E 430 (432)
T ss_pred C
T ss_conf 6
No 35
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.69 E-value=7.4e-05 Score=46.50 Aligned_cols=68 Identities=13% Similarity=0.131 Sum_probs=54.1
Q ss_pred EEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC---CC-HHHHHHHHC
Q ss_conf 765798399999828786688999899736996322774214789818999994788---99-899999864
Q 537021.9.peg.3 18 DVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS---IL-NSVLEKLSV 85 (100)
Q Consensus 18 ~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~---i~-~~vl~~i~~ 85 (100)
.-+++.+.|++.-.|+||+++.|++.|+++|.||-..+-..+...+.-+|-++.+.+ .+ +++.+++.+
T Consensus 2 ~~~~~~~IL~isCPD~~GIVA~VS~~L~~~ggNI~e~~Qf~D~~~~~FFMRvef~~~~~~~~~~~l~~~f~~ 73 (287)
T PRK13011 2 SRRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFRPEDEGLDEDALRAGFAP 73 (287)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 988777999998999996099999999968998957625358988808999999827888899999999999
No 36
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.67 E-value=0.00048 Score=42.23 Aligned_cols=68 Identities=12% Similarity=0.195 Sum_probs=52.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEC---CCCCHHHHHHHHCCCCEEEEE
Q ss_conf 999998287866889998997369963227742147898189999947---889989999986498829999
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCID---GSILNSVLEKLSVNVTIRFVK 93 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD---~~i~~~vl~~i~~~~~v~~vr 93 (100)
||=+.-.|+||++|++++.+|+.|-||.+..+-+... +....-+.++ .+-.+++++.++++|+|.-.+
T Consensus 1 TlRl~~~~~pG~Lg~vataIg~~GGnI~~idvve~~~-~~~v~Ditv~~~d~~h~~~Iv~al~~l~gV~V~~ 71 (74)
T cd04887 1 TLRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGR-DYTVRDITVDAPSEEHAETIVAAVRALPEVKVLS 71 (74)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEECC-CEEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9899954998649999999987698567789999449-9599999998697788999999996199859999
No 37
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.67 E-value=0.00015 Score=44.87 Aligned_cols=51 Identities=20% Similarity=0.115 Sum_probs=45.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCC
Q ss_conf 999998287866889998997369963227742147898189999947889
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI 75 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i 75 (100)
.|.+.=.|+||+++.|++.|+++|.||....-..+...+.-+|-++.+.+-
T Consensus 1 iL~i~CpD~~GIVa~Vs~~l~~~g~nI~e~~q~~D~~~~~FFmR~~f~~~~ 51 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEG 51 (74)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCC
T ss_conf 989978998881999999999879988662377369898489999997589
No 38
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.54 E-value=0.00023 Score=43.86 Aligned_cols=49 Identities=18% Similarity=0.151 Sum_probs=39.1
Q ss_pred CCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 9989976579839999982878668899989973699632277421478
Q 537021.9.peg.3 13 QEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS 61 (100)
Q Consensus 13 ~g~~v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~ 61 (100)
++-.-...++.+.|.+.=.|+||.|+.+.+.|++.+|||.++++....+
T Consensus 278 p~~~~g~~~~~~~l~v~i~D~pG~la~l~~~l~~~~ini~di~i~h~~r 326 (357)
T PRK06545 278 PGKHGGAIPSFYDLYVDVPDEPGVIAKVTRILAEEGISIENLRIELETR 326 (357)
T ss_pred CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEECCEEEECCC
T ss_conf 8766899986189998789999879999999998698726777876478
No 39
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.51 E-value=0.00021 Score=44.12 Aligned_cols=61 Identities=23% Similarity=0.244 Sum_probs=39.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC--CCE----EEEEEEECCCCC-HHHHHHHHCC
Q ss_conf 999982878668899989973699632277421478--981----899999478899-8999998649
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS--TEH----AISFLCIDGSIL-NSVLEKLSVN 86 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~--g~~----A~~ii~vD~~i~-~~vl~~i~~~ 86 (100)
+-+.-.|+||++.+|++.|++++|||..+...+... .|. |.+.+.+-...+ +++.+++.++
T Consensus 2 ~~v~G~DrpGIv~~it~~La~~~inI~~l~t~~~~a~~sg~~lF~a~~~v~lP~~~~~~~L~~~l~~l 69 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEEL 69 (81)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89980899887999999999869981466877763999981036899999379999999999999999
No 40
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=97.51 E-value=0.00055 Score=41.88 Aligned_cols=71 Identities=21% Similarity=0.200 Sum_probs=58.2
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE---CCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf 399999828786688999899736996322774214789818999994---788998999998649882999999
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI---DGSILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v---D~~i~~~vl~~i~~~~~v~~vr~i 95 (100)
..|-+.-.|++|.++.++++|++.++||.++..... .++.|.+-+.+ |-.--..++.+|+++|+|.+++.+
T Consensus 628 ~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~n~~~L~~i~~~l~~~~~V~~v~R~ 701 (701)
T COG0317 628 VDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVKNLNHLGRVLARLKQLPDVISVRRL 701 (701)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCC-CCCEEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 999999804656699999999857883699641236-78637999999978689999999998558982789839
No 41
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.50 E-value=0.00062 Score=41.63 Aligned_cols=74 Identities=15% Similarity=0.221 Sum_probs=59.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEC---CCCCHHHHHHHHCCCCEEEEEEEE
Q ss_conf 83999998287866889998997369963227742147898189999947---889989999986498829999999
Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCID---GSILNSVLEKLSVNVTIRFVKQFE 96 (100)
Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD---~~i~~~vl~~i~~~~~v~~vr~i~ 96 (100)
.++|-+.=.|+||++.+++++|...+.||.+.++++...-|..=|-+.++ ...-+.++.+|.+.-+|..|+.-.
T Consensus 2 krtl~~~V~dq~gvLNRIT~lF~RrqfNI~sltVg~te~~gIS~mt~vv~v~d~~~~eqlikqL~KqInVL~V~~~~ 78 (84)
T PRK13562 2 TRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYD 78 (84)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_conf 61899999547508889899999851782268863678988342699996486789999999998545579899983
No 42
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=97.47 E-value=0.00028 Score=43.47 Aligned_cols=57 Identities=32% Similarity=0.425 Sum_probs=45.4
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC-CCHHHHHHH
Q ss_conf 999828786688999899736996322774214789818999994788-998999998
Q 537021.9.peg.3 27 CIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS-ILNSVLEKL 83 (100)
Q Consensus 27 ~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~-i~~~vl~~i 83 (100)
.+...|+||+++++..+|+++++||..+..+.......+...+.++.+ -.+.+++++
T Consensus 2 ~i~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 59 (60)
T cd02116 2 TVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLEAL 59 (60)
T ss_pred EECCCCCCCHHHHHHHHHHHCCCCHHEEEEEECCCCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 3377998866999999999869895306840368897178999953777399998854
No 43
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.41 E-value=0.0005 Score=42.11 Aligned_cols=71 Identities=20% Similarity=0.225 Sum_probs=60.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 9999982878668899989973699632277421478981899999478899899999864988299999997
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEF 97 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i~~ 97 (100)
+|=+.-+|+-|+.-.+-.+|++++||+....+. ..|..-+.+-+++-.--++++.+|+.++||..||.+.|
T Consensus 2 RLeI~c~DRiGi~~eiL~lL~~~~IdL~giEi~--~~g~IYl~~~~l~f~~~~~Lm~~ir~I~GV~dVktv~~ 72 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEID--PKGRIYLNFPTIEFEKLQTLMPEIRRIDGVEDVKTVPY 72 (74)
T ss_pred EEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEC--CCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 389997300014999999999779983288872--68818997787898999999999847898316788613
No 44
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=97.35 E-value=0.0011 Score=40.32 Aligned_cols=76 Identities=14% Similarity=0.307 Sum_probs=61.2
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECC--CCCHHHHHHHHCCCCEEEEEEEE
Q ss_conf 79839999982878668899989973699632277421478981899999478--89989999986498829999999
Q 537021.9.peg.3 21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDG--SILNSVLEKLSVNVTIRFVKQFE 96 (100)
Q Consensus 21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~--~i~~~vl~~i~~~~~v~~vr~i~ 96 (100)
+..|+|.+.=.|.||++..+..+|+..|.||.+..++--...+.+-|-+-+.. .+-+.+.+.+..+-++..|..+.
T Consensus 2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~ 79 (163)
T COG0440 2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLT 79 (163)
T ss_pred CCEEEEEEEEECCCCEEEHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf 734899999977898141416888751766320799602789815899998278516899999987543502689847
No 45
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=97.35 E-value=0.00071 Score=41.32 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=51.4
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC----HHHHHHHHCC
Q ss_conf 79839999982878668899989973699632277421478981899999478899----8999998649
Q 537021.9.peg.3 21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL----NSVLEKLSVN 86 (100)
Q Consensus 21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~----~~vl~~i~~~ 86 (100)
+...+|.+.-.|+||+++.|++.|+++|.||..-.-..+..++.-+|-++.+.+-. +++.+.+..+
T Consensus 5 ~~~~~Ltv~Cpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~ 74 (287)
T COG0788 5 PDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPL 74 (287)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 6524999966998870999999999849866442125664478079999986388865499999889988
No 46
>TIGR00655 PurU formyltetrahydrofolate deformylase; InterPro: IPR004810 An Escherichia coli gene designated purU has been identified and characterised. The gene codes for a 280-amino-acid protein, PurU (P37051 from SWISSPROT, 3.5.1.10 from EC). PurU is an enzyme that catalyses the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate ,. 10-formyltetrahydrofolate + H(2)O = formate +tetrahydrofolate Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer of 32kDa subunits, is activated by methionine and inhibited by glycine. Heterotropic cooperativity is observed for activation by methionine in the presence of glycine and for inhibition by glycine in the presence of methionine. These results suggest that formyl-FH4 hydrolase is a regulatory enzyme whose main function is to balance the pools of FH4 and C1-FH4 in response to changing growth conditions. The enzyme uses methionine and glycine to sense the pools of C1-FH4 and FH4, respectively. ; GO: 0008864 formyltetrahydrofolate deformylase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=97.26 E-value=0.00058 Score=41.75 Aligned_cols=63 Identities=13% Similarity=0.116 Sum_probs=50.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEE-CCCCCCEEEEEEEECCCCC-----------HHHHHHHHC-CC
Q ss_conf 999998287866889998997369963227742-1478981899999478899-----------899999864-98
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLG-RSQSTEHAISFLCIDGSIL-----------NSVLEKLSV-NV 87 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~-r~~~g~~A~~ii~vD~~i~-----------~~vl~~i~~-~~ 87 (100)
+|++.=.|+||+|++|+++++++|.||-...=. -+..+|.-+|-++.+.+.- +++++++.+ ++
T Consensus 2 ~Ll~~CpD~kGlva~is~f~~~~g~NIi~~dq~~~D~~~g~Ff~R~e~~~~~~~~nteikeq~~~~L~~~~~~ala 77 (294)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQFSVDPETGRFFMRVELQLEGFRLNTEIKEQEESELLAAFKSALA 77 (294)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEEECCCCCCEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 0123159788728999999997489867417564415777131234440368731200001405899999986434
No 47
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.21 E-value=0.00087 Score=40.85 Aligned_cols=64 Identities=22% Similarity=0.183 Sum_probs=51.2
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC---CCH-HHHHHHHC
Q ss_conf 98399999828786688999899736996322774214789818999994788---998-99999864
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS---ILN-SVLEKLSV 85 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~---i~~-~vl~~i~~ 85 (100)
..+.|.+.=.|+||+++.|++.|+++|.||...+-..+...+.-+|-++.+.+ .+. ++.+++..
T Consensus 4 ~~~IL~isCPD~~GIVA~VT~~L~~~g~NI~e~~Qf~D~~t~~FFMRvef~~~~~~~~~~~L~~~f~~ 71 (285)
T PRK06027 4 QRYILLLSCPDRPGIVAAVSNFLYEHGGNIIDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAA 71 (285)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 45999998999996099999999968999937535458989828899999847988899999999999
No 48
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.21 E-value=0.003 Score=37.98 Aligned_cols=59 Identities=12% Similarity=0.286 Sum_probs=48.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHHHC
Q ss_conf 99999828786688999899736996322774214789818999994----78899899999864
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKLSV 85 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i~~ 85 (100)
.|=+.-.|+||.+..|+.+|.+.+++|.+-+.+. .|+.|.-++=+ ..+++++.+++|++
T Consensus 3 ~lEv~~~DRpGLL~~itr~l~e~gL~I~~A~IsT--~Gera~DvFYVtD~~G~~idp~~~e~ir~ 65 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEIST--QGDMAVNVFYVTDANGNPVDPKTIEAVRQ 65 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEE--CCCEEEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 7999869968689999999998791588999960--49889899999899989989999999999
No 49
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=97.20 E-value=0.00054 Score=41.92 Aligned_cols=53 Identities=13% Similarity=0.076 Sum_probs=36.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCC--CCCEEEEEEEECCCCC
Q ss_conf 3999998287866889998997369963227742147--8981899999478899
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQ--STEHAISFLCIDGSIL 76 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~--~g~~A~~ii~vD~~i~ 76 (100)
+.+-+.-.|+||++.+++..|++++|||+.++..... .++..+..+.+.-.+|
T Consensus 96 ~~v~v~g~D~PGIV~~vt~~la~~~InI~~L~T~t~~A~~~~~~~f~~~~t~~iP 150 (183)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERAAQLHIQITAHSP 150 (183)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCHHHHEEEEECCCCCCCCEEEEEEEECCC
T ss_conf 9999997898988999999999869987652221144999997369999998079
No 50
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.19 E-value=0.0044 Score=37.12 Aligned_cols=62 Identities=23% Similarity=0.274 Sum_probs=46.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCCH----HHHHHHHCC
Q ss_conf 399999828786688999899736996322774214789--818999994788998----999998649
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSILN----SVLEKLSVN 86 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~~----~vl~~i~~~ 86 (100)
..+++.-.|+||.+.++-+.|+++|||+...+- |-.++ ..-+-.+++++.+.+ +++++|++.
T Consensus 2 tsl~f~~~~~pGsL~~~L~~f~~~~iNLtkIeS-RP~~~~~~~Y~F~vd~~g~~~d~~~~~al~~l~~~ 69 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIES-RPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRL 69 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEE-EECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 799999899785899999999987976799996-76389984499999985587988999999999985
No 51
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.19 E-value=0.0012 Score=40.07 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=45.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC
Q ss_conf 98399999828786688999899736996322774214789818999994788
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS 74 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~ 74 (100)
..+.|.+.=.|+||+++.|++.|+++|.||-..+-..+...+.-+|-++.+..
T Consensus 8 ~s~IL~l~CPD~~GIVA~VS~~L~~~g~NI~e~~Qf~D~~~~~FFMRv~f~~~ 60 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQ 60 (289)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEEEECC
T ss_conf 97899998999886299999999978998807325427888808999999627
No 52
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.00 E-value=0.0059 Score=36.47 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=46.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHHHC
Q ss_conf 99999828786688999899736996322774214789818999994----78899899999864
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKLSV 85 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i~~ 85 (100)
.+=+.-.|+||.+..++..|.+.|+||.....+. .|+.|.-++-+ .++++++-+++|++
T Consensus 2 vieV~~~DrpGLL~~i~~~l~~~~l~I~~A~I~T--~g~~v~D~FyV~d~~g~~~~~~~~~~i~~ 64 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIAT--LGERAEDVFYVTDADGQPLDPERQEALRA 64 (70)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEE--ECCEEEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 8999978955599999999998893899999984--09989999999899989299999999999
No 53
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=96.97 E-value=0.0071 Score=36.04 Aligned_cols=67 Identities=19% Similarity=0.250 Sum_probs=53.9
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCCH----HHHHHHHCCCC
Q ss_conf 798399999828786688999899736996322774214789--818999994788998----99999864988
Q 537021.9.peg.3 21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSILN----SVLEKLSVNVT 88 (100)
Q Consensus 21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~~----~vl~~i~~~~~ 88 (100)
+...+|++.=.|+||.+.++-..|+.+|||...... |..++ +.=+..+++++.+.+ +.|++|++.-.
T Consensus 192 ~~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIES-RP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~eL~~~t~ 264 (279)
T COG0077 192 PEKTSLIFSVPNKPGALYKALGVFAKRGINLTKIES-RPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITE 264 (279)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEE-CCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHEE
T ss_conf 734999998599870499999999876946226860-2068987059999999547686669999999985302
No 54
>KOG2663 consensus
Probab=96.94 E-value=0.0012 Score=40.18 Aligned_cols=74 Identities=14% Similarity=0.163 Sum_probs=53.7
Q ss_pred ECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEE--EEEECCCCCHHHHHHHHCCCCEEEEE
Q ss_conf 579839999982878668899989973699632277421478981899--99947889989999986498829999
Q 537021.9.peg.3 20 DIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAIS--FLCIDGSILNSVLEKLSVNVTIRFVK 93 (100)
Q Consensus 20 ~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~--ii~vD~~i~~~vl~~i~~~~~v~~vr 93 (100)
++..|++=+.-.|.||||.+|+.+|+..|.||.++.++........-| ++.--+.+-+.+.+.|..+-.|..|-
T Consensus 74 r~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aVl 149 (309)
T KOG2663 74 RVKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAVL 149 (309)
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCHHEEEECHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHHEEE
T ss_conf 3400158888317822888888888761577213133004445444415889554789999999999764420231
No 55
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.93 E-value=0.0074 Score=35.93 Aligned_cols=49 Identities=10% Similarity=0.166 Sum_probs=35.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE
Q ss_conf 98399999828786688999899736996322774214789818999994
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI 71 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v 71 (100)
++..+++.-.|+||..+.++..|+.+++||...+....+. |.|+-.+-+
T Consensus 678 ~~~~i~I~~~Dr~gLFa~i~g~l~~~~lnI~~A~i~t~~d-G~ald~F~V 726 (857)
T PRK03059 678 EGLQVLVYTPDQPDLFARICGYFDRNGFSILDARVHTTRH-GYALDTFQV 726 (857)
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEECCC-CCEEEEEEE
T ss_conf 8589999957888829999999987898278889998378-838999999
No 56
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.83 E-value=0.013 Score=34.65 Aligned_cols=62 Identities=19% Similarity=0.308 Sum_probs=44.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE---CC-CC-CHHHHHHHHC
Q ss_conf 8399999828786688999899736996322774214789818999994---78-89-9899999864
Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI---DG-SI-LNSVLEKLSV 85 (100)
Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v---D~-~i-~~~vl~~i~~ 85 (100)
+.-+++.-+|+||.+++++..|+..|+||..-+....+. |.|+-.+-+ ++ ++ +++-+++|++
T Consensus 1 ~tei~v~~~Dr~gLf~~i~~~l~~~~l~I~~A~I~t~~~-g~~~D~F~V~d~~g~~i~~~~~~~~i~~ 67 (73)
T cd04900 1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRD-GYALDTFVVLDPDGEPIGERERLARIRE 67 (73)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEECCC-CEEEEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 939999968978789999999998898599999998589-8699999998899997999999999999
No 57
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.80 E-value=0.0041 Score=37.31 Aligned_cols=58 Identities=24% Similarity=0.291 Sum_probs=43.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCC
Q ss_conf 99998287866889998997369963227742147898189999947889989999986498
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNV 87 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~ 87 (100)
|-+.-+|+||.++.++.+|+++||||-++.+.-.. +.++.-+-+|. |+...+.|++.-
T Consensus 4 lSVFlENk~GrL~~v~~~L~~~~InI~AlsiaDt~--dfgilRlivdd--p~~A~~~L~~~G 61 (66)
T cd04908 4 LSVFLENKPGRLAAVTEILSEAGINIRALSIADTS--EFGILRLIVSD--PDKAKEALKEAG 61 (66)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC--CCCEEEEEECC--HHHHHHHHHHCC
T ss_conf 89996179645999999998789978998721366--86589999489--899999999879
No 58
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.77 E-value=0.01 Score=35.18 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=45.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHH
Q ss_conf 98399999828786688999899736996322774214789818999994----788998999998
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKL 83 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i 83 (100)
++.-+++..+|+||..+.++..|+.+++||...++.+.+. |.++-.+-+ +++++++-+++|
T Consensus 697 g~tei~I~~~Dr~~LFa~i~g~L~~~~lnI~~A~I~t~~d-g~~ld~F~V~~~~g~~~~~~r~~~i 761 (881)
T PRK05007 697 GGTEIFIYSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRD-GMAMDTFIVLEPDGSPLSQDRHQVI 761 (881)
T ss_pred CEEEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEEEECCC-CEEEEEEEEECCCCCCCCHHHHHHH
T ss_conf 8079999960788739999999986898368878798179-8089999997788998998999999
No 59
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=96.75 E-value=0.014 Score=34.48 Aligned_cols=59 Identities=15% Similarity=0.338 Sum_probs=44.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHHHC
Q ss_conf 99999828786688999899736996322774214789818999994----78899899999864
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKLSV 85 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i~~ 85 (100)
.+.+.-.|+||.+..++..|.+.|+||..-+.... |+.+.-++-+ ..+.+++-.++|++
T Consensus 2 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~I~T~--~~~~~D~F~V~d~~g~~~~~~~~~~l~~ 64 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTT--GERALDVFYVTDSDGRPLDPERIARLEE 64 (70)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEC--CCEEEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 89999689788999999999887950779999964--9989999999889969399999999999
No 60
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=96.74 E-value=0.0017 Score=39.28 Aligned_cols=51 Identities=25% Similarity=0.357 Sum_probs=38.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC
Q ss_conf 39999982878668899989973699632277421478981899999478899
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL 76 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~ 76 (100)
..+.+.-+|+||+++.+++.|+++|+||.+.. +.--.+.--|.+=+|-+..
T Consensus 4 avITV~GkDr~GIva~is~vLAe~~vNIldis--Qtvm~~~ftm~~lV~~~~~ 54 (90)
T COG3830 4 AVITVIGKDRVGIVAAVSRVLAEHGVNILDIS--QTVMDGFFTMIMLVDISKE 54 (90)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEHH--HHHHHHHCEEEEEECCCHH
T ss_conf 89999758877334999999997698188777--9999623116657727767
No 61
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.70 E-value=0.0055 Score=36.61 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=37.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEE--EEEECCC-CCHHHHHHHHC
Q ss_conf 999982878668899989973699632277421478981899--9994788-99899999864
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAIS--FLCIDGS-ILNSVLEKLSV 85 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~--ii~vD~~-i~~~vl~~i~~ 85 (100)
+.+.-+|+||+++.++++|+++++||-... +.--.+.-.| .+++.++ -...+++++..
T Consensus 2 Itv~G~DrpGi~a~v~~~La~~~~~IlDI~--Q~vi~~~l~l~~lv~ip~~~~~~~l~k~L~~ 62 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVG--QAVIHGRLSLGILVQIPDSADSEALLKDLLF 62 (75)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEE--HHHCCCEEEEEEEEEECCCCCHHHHHHHHHH
T ss_conf 899779988789999999987799089625--5506475779999980785346899999999
No 62
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=96.68 E-value=0.013 Score=34.62 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=36.4
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE
Q ss_conf 98399999828786688999899736996322774214789818999994
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI 71 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v 71 (100)
++..+++.-.|+||..+.++..|+.+|.||...++...+. |.++-.+-+
T Consensus 703 g~t~i~V~~~D~~gLFa~i~g~l~~~~lnI~~A~I~t~~d-g~~lD~f~V 751 (894)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSS-QFTLDTYIV 751 (894)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEECCC-CEEEEEEEE
T ss_conf 8069999925887659999999997898268989887379-808999999
No 63
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=96.60 E-value=0.024 Score=33.27 Aligned_cols=60 Identities=20% Similarity=0.237 Sum_probs=45.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCC----HHHHHHHHCC
Q ss_conf 9999828786688999899736996322774214789--81899999478899----8999998649
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSIL----NSVLEKLSVN 86 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~----~~vl~~i~~~ 86 (100)
+++.-+|+||.+.++-+.+++++||+..... |..++ +.-.-.+++++... ++++++|++.
T Consensus 2 i~f~~~~~pGaL~~~L~~F~~~~iNlt~IeS-RP~~~~~~~y~F~id~eg~~~~~~~~~~l~~l~~~ 67 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIES-RPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRV 67 (75)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEE-EECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 8999689787899999999988966799995-77499995699999971685978999999999984
No 64
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.59 E-value=0.022 Score=33.48 Aligned_cols=63 Identities=14% Similarity=0.298 Sum_probs=50.1
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHHHC
Q ss_conf 798399999828786688999899736996322774214789818999994----78899899999864
Q 537021.9.peg.3 21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKLSV 85 (100)
Q Consensus 21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i~~ 85 (100)
...+.+=+.-.|+||.++.|+.+|.+.|+||.+-.. .+.|+.|.-+.=+ .++++++..++|++
T Consensus 803 ~~~TviEv~a~DrpGLL~~I~~~f~~~~l~I~~AKI--sT~GerveDvFyVtd~~g~kL~~~~~~~l~~ 869 (881)
T PRK05007 803 DRKSFMELIALDQPGLLARVGKIFADLGISLHGAKI--TTIGERVEDLFILATADGRALNEELQQELRQ 869 (881)
T ss_pred CCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE--CCCCCEEEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 873899998588067999999999988987989896--2547648999999889979698999999999
No 65
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=96.59 E-value=0.0057 Score=36.54 Aligned_cols=50 Identities=14% Similarity=0.251 Sum_probs=41.0
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECC
Q ss_conf 839999982878668899989973699632277421478981899999478
Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDG 73 (100)
Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~ 73 (100)
...|-+.-+|+||-+.+|...|+++++|+.+.+-.-..+ ..|+.++.++.
T Consensus 69 ~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~KAlli~r~ed 118 (142)
T COG4747 69 TDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QKALLIVRVED 118 (142)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECC-CEEEEEEEHHH
T ss_conf 248999815888708899998741486720145653037-33799998457
No 66
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.55 E-value=0.017 Score=33.98 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=34.2
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE
Q ss_conf 98399999828786688999899736996322774214789818999994
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI 71 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v 71 (100)
++.-+++.-.|+||..+.+++.|+.+++||..-+....+ .+.++-...+
T Consensus 689 ~~~ei~I~~~Dr~gLFa~i~g~L~~~~l~I~~A~I~t~~-~g~vlDtF~V 737 (869)
T PRK04374 689 DALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAP-HDAIFDVFEV 737 (869)
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECC-CCEEEEEEEE
T ss_conf 838999992688776999999999789976877778758-9838999996
No 67
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.49 E-value=0.019 Score=33.79 Aligned_cols=51 Identities=18% Similarity=0.159 Sum_probs=40.0
Q ss_pred ECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE
Q ss_conf 5798399999828786688999899736996322774214789818999994
Q 537021.9.peg.3 20 DIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI 71 (100)
Q Consensus 20 ~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v 71 (100)
..++..+++.-+|+||..+.++..|+.+++||...++..... |.++-.+-+
T Consensus 682 ~~~~tei~I~~~Dr~~LFa~i~~~l~~~~lnI~~A~I~t~~d-g~~ld~f~V 732 (862)
T PRK01759 682 SRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQD-GYVFDSFIV 732 (862)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCC-CCEEEEEEE
T ss_conf 788269999943886689999999997898358867477378-838999999
No 68
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=96.36 E-value=0.0043 Score=37.18 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=35.2
Q ss_pred ECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf 5798399999828786688999899736996322774214789
Q 537021.9.peg.3 20 DIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST 62 (100)
Q Consensus 20 ~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g 62 (100)
.+..+-.-+.-.|+||++.+++.+|..+||||++|...+...-
T Consensus 89 ~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~ 131 (176)
T COG2716 89 NPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAP 131 (176)
T ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHCCCCHHHCEEEEEECC
T ss_conf 8831999997168835899999998646986555045566579
No 69
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.36 E-value=0.022 Score=33.49 Aligned_cols=49 Identities=10% Similarity=0.142 Sum_probs=38.8
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEC
Q ss_conf 983999998287866889998997369963227742147898189999947
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCID 72 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD 72 (100)
++..+++.-.|+||..++++.+|+.+++||-+-++.. ..|.|+....+.
T Consensus 599 ~~~~v~V~~~DrpgLfa~iag~La~~~l~I~~A~i~t--~dg~ald~f~V~ 647 (781)
T PRK03381 599 PGFEVTVVAPDRRGLLSKAAGVLALNRLRVRSASANS--HDGVALLEFVVS 647 (781)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEC--CCCCEEEEEEEC
T ss_conf 8479999846875459999999986799358899972--699089999971
No 70
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.31 E-value=0.011 Score=35.06 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=48.4
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHH
Q ss_conf 3999998287866889998997369963227742147898189999947889989999
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLE 81 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~ 81 (100)
|-+.+.-.|+|..+++++++|++-|.||..-++.. +..|+++-+.-+|+=..++.-.
T Consensus 2 hEitfst~dkPklLsqls~lL~d~GLNI~EAH~fs-T~DGysLdVFVV~GW~~ee~~~ 58 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFS-TDDGLALDIFVVTGWKRGETAA 58 (68)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHEEE-CCCCCEEEEEEECCCCHHHHHH
T ss_conf 06998617851589999999998173442342264-3787278899981888253899
No 71
>PRK11898 prephenate dehydratase; Provisional
Probab=96.31 E-value=0.049 Score=31.62 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=47.0
Q ss_pred CCCEEEEEE-CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCCH----HHHHHHHCC
Q ss_conf 983999998-28786688999899736996322774214789--818999994788998----999998649
Q 537021.9.peg.3 22 GRLMICIVN-ADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSILN----SVLEKLSVN 86 (100)
Q Consensus 22 ~~~~L~i~~-~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~~----~vl~~i~~~ 86 (100)
+...|++.- .|+||.+.++-+.|+++|||...... |-.++ +.-+-.+++++.+.+ ++|++|++.
T Consensus 194 ~KtSl~f~~~~d~pGaL~~~L~~Fa~~~INLtkIeS-RP~~~~~~~Y~FyiD~egh~~d~~v~~aL~~l~~~ 264 (285)
T PRK11898 194 DKTSLALTLPANVPGALYKALSEFAWRGINLTRIES-RPTKTGLGEYFFFIDLEGHIDDVLVAEALKELEAL 264 (285)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEE-CCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 779999994899986799999999987937588982-01689996189999984687989999999999985
No 72
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.28 E-value=0.03 Score=32.73 Aligned_cols=60 Identities=12% Similarity=0.164 Sum_probs=47.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEC-----CCCCHHHHHHHHCC
Q ss_conf 999998287866889998997369963227742147898189999947-----88998999998649
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCID-----GSILNSVLEKLSVN 86 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD-----~~i~~~vl~~i~~~ 86 (100)
.+=+.-.|+||.+..+++.|++.+++|..-+. .+.|+.++-+.-+- +--++..++.|++-
T Consensus 3 vieV~s~drpGlL~~v~q~L~dl~L~I~~A~I--sT~Ge~~~DVFyVtD~~G~Ki~d~~~i~~I~~~ 67 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYI--SSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKS 67 (72)
T ss_pred EEEEECCCCCCCHHHHHHHHHHCCEEEEEEEE--ECCCCEEEEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 99980699986599999999868928989999--425988999999806999995588999999998
No 73
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.27 E-value=0.033 Score=32.52 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=38.8
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE
Q ss_conf 98399999828786688999899736996322774214789818999994
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI 71 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v 71 (100)
+...+++.-.|+||..+.++..|+.+|.||...+....+. |.|+-.+-+
T Consensus 734 ~~tev~V~~~DrpgLFa~iagala~~glnI~dA~I~T~~d-G~alD~F~V 782 (934)
T PRK05092 734 GVTELTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTD-GRALDTFWI 782 (934)
T ss_pred CEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECCC-CEEEEEEEE
T ss_conf 8489999961788859999999997899547889898489-809999999
No 74
>PRK11899 prephenate dehydratase; Provisional
Probab=96.25 E-value=0.057 Score=31.27 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=46.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCCHH----HHHHHHCC
Q ss_conf 399999828786688999899736996322774214789--8189999947889989----99998649
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSILNS----VLEKLSVN 86 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~~~----vl~~i~~~ 86 (100)
..|++.-.|+||.+.++-+.|+.+|||+....- |-.++ +.-+-.+++++-+.++ +|++|+..
T Consensus 195 Tsl~~~~~d~pGaL~~vL~~Fa~~~INLtkIeS-RP~~~~~~~Y~F~iD~egh~~d~~~~~al~~l~~~ 262 (284)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLES-YMVGGSFTATQFYADIEGHPEDRNVALALEELRFF 262 (284)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEE-EECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 789997389861999999999987987568850-12599984399999960687989999999999985
No 75
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=96.18 E-value=0.043 Score=31.89 Aligned_cols=68 Identities=13% Similarity=0.194 Sum_probs=47.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCC--HHHHHHHHCCCCEEEEEEE
Q ss_conf 99999828786688999899736996322774214789--81899999478899--8999998649882999999
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSIL--NSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~--~~vl~~i~~~~~v~~vr~i 95 (100)
.+++.=+|+||.++++-..+.+++||...... |..+. ..-.-.++.++..+ ++++++|++. +..+|.+
T Consensus 2 Si~fs~~~~~GaL~~~L~~F~~~~iNlt~IES-RPs~~~~~~y~FfvD~eg~~~~i~~al~~Lk~~--~~~vkil 73 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIES-RPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRV--VADVNIL 73 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHH--CCEEEEC
T ss_conf 69999589864899999999987986789983-338999975999999608989999999999974--7828851
No 76
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.18 E-value=0.039 Score=32.12 Aligned_cols=59 Identities=17% Similarity=0.118 Sum_probs=41.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEC----CCCC-HHHHHHHHC
Q ss_conf 99998287866889998997369963227742147898189999947----8899-899999864
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCID----GSIL-NSVLEKLSV 85 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD----~~i~-~~vl~~i~~ 85 (100)
+=+.-.|+||.++.++.+|++.++||.+-+...... ..|..+.-.| .++. ++=++.|++
T Consensus 3 iEltg~DRPGLLsei~avLsdl~~~v~~A~iwT~~~-Rva~v~yvtD~~tG~~I~d~~Rla~I~~ 66 (74)
T cd04925 3 IELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNG-RLACVIYVRDEETGAPIDDPIRLASIED 66 (74)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCC-EEEEEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 887139987269999999986878458878522377-1799999972678996789899999999
No 77
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=96.16 E-value=0.055 Score=31.34 Aligned_cols=73 Identities=22% Similarity=0.220 Sum_probs=56.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC----CCHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 399999828786688999899736996322774214789818999994788----99899999864988299999997
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS----ILNSVLEKLSVNVTIRFVKQFEF 97 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~----i~~~vl~~i~~~~~v~~vr~i~~ 97 (100)
.+|.+.-+|+-|+++++-..+++.++||-+.+-.- .-.|.|-.-+.+|-. --++++++|+++++|..|+.+..
T Consensus 73 ~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~i-pl~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeivgs 149 (150)
T COG4492 73 ITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTI-PLQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIVGS 149 (150)
T ss_pred EEEEEEEHHHHHHHHHHHHHHHHHCCCEEEEECCC-CCCCEEEEEEEEECHHHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 99999971333159999999997278479986044-437642589999713324229999999852155468998506
No 78
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=95.78 E-value=0.0071 Score=36.03 Aligned_cols=66 Identities=20% Similarity=0.087 Sum_probs=42.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CEEEEEEEECCCCCHHHHHHHHCCCCEEEE
Q ss_conf 9999828786688999899736996322774214789---818999994788998999998649882999
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST---EHAISFLCIDGSILNSVLEKLSVNVTIRFV 92 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g---~~A~~ii~vD~~i~~~vl~~i~~~~~v~~v 92 (100)
-+..=.|+||+.+++-+.|+++|||+.-.-= ....+ ..++++-+-|-+-..++++++++--+..++
T Consensus 5 tl~gvpd~PG~aa~iF~~La~~~InVDmIvQ-~~~~~~~~disFTv~~~dl~~a~~vl~~~~~~l~~~~v 73 (75)
T cd04913 5 TLRGVPDKPGVAAKIFGALAEANINVDMIVQ-NVSRDGTTDISFTVPKSDLKKALAVLEKLKKELGAEEV 73 (75)
T ss_pred EEECCCCCCCHHHHHHHHHHHCCCCEEEEEE-CCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 9828999996699999999985984799986-16789945899990499999999999999986497234
No 79
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=95.75 E-value=0.094 Score=30.11 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=47.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCCH----HHHHHHHCC
Q ss_conf 98399999828786688999899736996322774214789--818999994788998----999998649
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSILN----SVLEKLSVN 86 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~~----~vl~~i~~~ 86 (100)
+...|++.-.|+||.+..+-+.|+.+|||.....- |-.++ +.-+-.+++++.+.+ ++|++|++.
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~~INLtkIeS-RP~~~~~~~Y~FfvD~eGh~~d~~v~~aL~~l~~~ 365 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLES-RPIHGNPWEEMFYLDIQANLESAEMQKALKELGEI 365 (386)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 73689996699987799999999987978657863-20799996479999972787999999999999986
No 80
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.70 E-value=0.038 Score=32.17 Aligned_cols=60 Identities=15% Similarity=0.151 Sum_probs=40.6
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC---CCEEEEEEEECC---CCCHHHHHHHHCC
Q ss_conf 99982878668899989973699632277421478---981899999478---8998999998649
Q 537021.9.peg.3 27 CIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS---TEHAISFLCIDG---SILNSVLEKLSVN 86 (100)
Q Consensus 27 ~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~---g~~A~~ii~vD~---~i~~~vl~~i~~~ 86 (100)
-+.=.|+||.++++.+++++.|.||-...-.|... -+.+-..+.+.. +=-++++++|++.
T Consensus 2 ~v~i~D~PG~L~~l~~~ia~~gaNI~~i~H~R~~~~~~~~~~~v~i~~Et~~~eh~~~i~~~L~~~ 67 (73)
T cd04886 2 RVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA 67 (73)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHC
T ss_conf 899348981799999999986982899999864588988769999999849999999999999986
No 81
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=95.69 E-value=0.15 Score=29.02 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=48.9
Q ss_pred ECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHHHC
Q ss_conf 5798399999828786688999899736996322774214789818999994----78899899999864
Q 537021.9.peg.3 20 DIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKLSV 85 (100)
Q Consensus 20 ~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i~~ 85 (100)
+.....+=+.-.|+||.++.|+.+|.+.|++|.+-.. .+.|+.+.-+.=+ ..+++++-.++|++
T Consensus 788 s~~~TvleV~a~DrpGLL~~I~~~f~~~~l~I~~AkI--~T~Gerv~DvFyVtd~~g~kl~d~~~~~l~~ 855 (862)
T PRK01759 788 KQEHTEMELFALDKAGLLAEVSQIFSELNLNLLNAKI--TTIGEKAEDFFILTNQQGQALDEQERKALKS 855 (862)
T ss_pred CCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE--CCCCCEEEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 8884899999688178999999999987987989896--2678548999999789979199899999999
No 82
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=95.64 E-value=0.025 Score=33.11 Aligned_cols=73 Identities=11% Similarity=0.095 Sum_probs=62.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHH-HHHHCCCCEEEEEE
Q ss_conf 98399999828786688999899736996322774214789818999994788998999-99864988299999
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVL-EKLSVNVTIRFVKQ 94 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl-~~i~~~~~v~~vr~ 94 (100)
..|.|.+.-+++|+++-+|..+.-..|.+|.+|++.....++.+-.-+.++++=|-++| ..|.++.+|..++.
T Consensus 2 ~~h~L~i~a~~rPevLERiLRVvRHRGF~v~~m~m~~~~~~~~~~i~ltV~SdR~i~lL~~QL~KL~DV~~v~v 75 (76)
T PRK11152 2 MQHQLTIKARFRPEVLERVLRVVRHRGFQVCQMNMTANSDAQNINIELTVASERAIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred CEEEEEEEEECCCHHHEEEEEEEEECCEEEEEEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHCCEEEEEE
T ss_conf 51899999706977831263478416849999762673899889999999057739999998874271689996
No 83
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.58 E-value=0.11 Score=29.70 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=42.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC-CCEEEEEEEECCCCC--HHHHHHHHC
Q ss_conf 9999982878668899989973699632277421478-981899999478899--899999864
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS-TEHAISFLCIDGSIL--NSVLEKLSV 85 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~-g~~A~~ii~vD~~i~--~~vl~~i~~ 85 (100)
.+++.=+|+||.++++-.++.+++||.........++ .+.-.-.+++|+.-. +++++.|++
T Consensus 2 SlvFslk~~~GaL~~~L~~F~~~~iNlthIESRpSk~~~~~Y~ffvD~e~~~~~l~~~l~~Lk~ 65 (74)
T cd04929 2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR 65 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 0999968865679999999998697779985587878897189999903997999999999998
No 84
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=95.41 E-value=0.038 Score=32.17 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=40.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHC
Q ss_conf 9999982878668899989973699632277421478981899999478899899999864
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSV 85 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~ 85 (100)
.+.+.-.|+||+++.++.+++++|+||..=++.+-. +..-+++-+.+ +.+.++++++
T Consensus 10 vit~~G~DrpGiv~~v~~~~~~~g~ni~dSrm~~lg--~~f~~imlvSg--~~~ai~~lE~ 66 (183)
T PRK11589 10 VITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLG--EEFTFIMLLSG--SWNAITLIES 66 (183)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CEEEEEEEECC--CHHHHHHHHH
T ss_conf 999970898738999999999769987266688745--70699999408--8758899986
No 85
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.21 E-value=0.15 Score=29.07 Aligned_cols=64 Identities=17% Similarity=0.294 Sum_probs=46.8
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCC---HHHHHHHHCC
Q ss_conf 98399999828786688999899736996322774214789--81899999478899---8999998649
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSIL---NSVLEKLSVN 86 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~---~~vl~~i~~~ 86 (100)
+...+++.-+|+||.+.++-..+++++||.....- |..+. ..-.-.+++|..-. +++++.|++-
T Consensus 13 ~ktSlifs~~~~~GaL~~~L~~F~~~~INLt~IES-RPsk~~~~eY~FfVD~e~~~~~~l~~~i~~Lr~~ 81 (90)
T cd04931 13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIES-RPSRLNKDEYEFFINLDKKSAPALDPIIKSLRND 81 (90)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 98899999389767799999999987967478876-7489999608999992388757799999999985
No 86
>TIGR00119 acolac_sm acetolactate synthase, small subunit; InterPro: IPR004789 Acetolactate synthases are a group of biosynthetic enzymes apparently found in plants, fungi and bacteria that are capable of de novo synthesis of the branched-chain amino acids . They can all synthesize acetolactate from pyruvate in the biosynthesis of valine, while some are also capable of synthesizing acetohydroxybutyrate from pyruvate and ketobutyrate during the biosynthesis of isoleucine. These enzymes generally require thiamin diphosphate, FAD and a divalent metal ion for catalysis, though some enzymes specific for acetolactate synthesis do not require FAD. They are composed of two subunits, a large catalytic subunit, and a smaller regulatory subunit which binds the natural modulators (valine, and in some cases leucine or isoleucine). These enzymes are the target for currently-used herbicides such as sulphonylureas and imidazolinones. Their restricted distribution also makes them potential targets for the development of novel antibacterial and antifungal compounds. This entry represents the small regulatory subunit of acetolactate synthase. It contains an ACT domain, which is a predicted regulatory ligand-binding fold often found in proteins regulated by small-molecule effectors .; GO: 0003984 acetolactate synthase activity, 0009082 branched chain family amino acid biosynthetic process.
Probab=94.94 E-value=0.062 Score=31.09 Aligned_cols=73 Identities=15% Similarity=0.304 Sum_probs=57.6
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEE--ECCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf 839999982878668899989973699632277421478981899999--4788998999998649882999999
Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLC--IDGSILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~--vD~~i~~~vl~~i~~~~~v~~vr~i 95 (100)
.|.+-+.-.++||++.++...+...+.||.++.++.....+.+-+.+. -|..+-+.+...+.++-.+..+.-+
T Consensus 2 ~~~~~~~~~~~~g~l~~~~g~~~~~g~n~~~~~~~~~~~~~~~~~~~~~~g~~~~~e~~~~~l~~~~~~~~~~~~ 76 (205)
T TIGR00119 2 KHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQLTKQLNKLVDVLKVSDL 76 (205)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 405776651454136787776653156610013115677652047888605414689999988765433321024
No 87
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=94.93 E-value=0.26 Score=27.79 Aligned_cols=63 Identities=21% Similarity=0.182 Sum_probs=43.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEE
Q ss_conf 9999828786688999899736996322774214789818999994788998999998649882999
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFV 92 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~v 92 (100)
+-+.-+|+||-++.+.+.|.++||||-++.+.- .|+..+.-+-+ +-|++.-..+++---+.+.
T Consensus 6 ISvFlENk~GRL~~~~~~L~eagINiRA~tiAd--t~dFGIiRmvV--~~~d~A~~~Lee~gF~Vr~ 68 (142)
T COG4747 6 ISVFLENKPGRLASVANKLKEAGINIRAFTIAD--TGDFGIIRMVV--DRPDEAHSVLEEAGFTVRE 68 (142)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECC--CCCCCEEEEEC--CCHHHHHHHHHHCCCEEEE
T ss_conf 998750786449999999997698658887303--66753699970--8858999999877938986
No 88
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=94.69 E-value=0.041 Score=32.01 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=39.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf 999998287866889998997369963227742147898189999947889989999986
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS 84 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~ 84 (100)
.+.+.-.|+||+++.++..++++++||..-++.+-. +..-+++-+.++ .+.+.+++
T Consensus 3 vit~iG~DrpGiv~~vs~~v~~~gcNi~dSrmt~lg--~~Fa~imlvsG~--w~~ia~lE 58 (77)
T cd04893 3 VISALGTDRPGILNELTRAVSESGCNILDSRMAILG--TEFALTMLVEGS--WDAIAKLE 58 (77)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCEEHHHHHHHH--CCEEEEEEEECC--HHHHHHHH
T ss_conf 999962898659999999999869987243788873--603899999528--88999999
No 89
>PRK03059 PII uridylyl-transferase; Provisional
Probab=94.09 E-value=0.35 Score=27.11 Aligned_cols=66 Identities=15% Similarity=0.251 Sum_probs=49.7
Q ss_pred EEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECC-CC-CHHHHHHHHC
Q ss_conf 76579839999982878668899989973699632277421478981899999478-89-9899999864
Q 537021.9.peg.3 18 DVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDG-SI-LNSVLEKLSV 85 (100)
Q Consensus 18 ~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~-~i-~~~vl~~i~~ 85 (100)
+.+...+.+=+.-.|+||.++.|+.+|.+.+++|.+-.. .+.|+.+.-+.=+++ ++ +++.+++|++
T Consensus 782 ~~s~~~TvlEV~a~DrpGLL~~I~~~l~~~~l~I~~AkI--~T~Gerv~DvFyV~g~ki~d~~~~~~i~~ 849 (857)
T PRK03059 782 DERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKI--NTLGERVEDVFLLDGAGLSDNRLQIQLET 849 (857)
T ss_pred CCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE--CCCCCEEEEEEEECCCCCCCHHHHHHHHH
T ss_conf 798874899999588177999999999988977989896--36476189999985998899899999999
No 90
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=94.05 E-value=0.49 Score=26.34 Aligned_cols=66 Identities=15% Similarity=0.278 Sum_probs=49.8
Q ss_pred EEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCC-HHHHHHHHC
Q ss_conf 765798399999828786688999899736996322774214789818999994----78899-899999864
Q 537021.9.peg.3 18 DVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSIL-NSVLEKLSV 85 (100)
Q Consensus 18 ~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~-~~vl~~i~~ 85 (100)
+.+...+.+=+.-.|+||.++.|+.+|++.|++|.+-.. .+.|+.|.-+.=+ ..+++ ++.+++|++
T Consensus 809 ~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI--~T~Gerv~DvFyVtd~~g~kl~d~~~~~~l~~ 879 (894)
T PRK00275 809 DAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKI--ATLGERVEDVFFITDADGQPLSDPQLCSRLQQ 879 (894)
T ss_pred CCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE--CCCCCEEEEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 898884899999588076999999999988987988896--35476089999996799996899999999999
No 91
>TIGR01693 UTase_glnD protein-P-II uridylyltransferase; InterPro: IPR010043 This entry describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for signal-transduction protein PII, and acts as the sensory component of the nitrogen regulation (ntr) system . The ntr system modulates nitrogen metabolism in response to the prevailing nitrogen source and the requirements of the cell. During nitrogen fixation, ammonia and 2-oxoglutarate can be used to produce glutamate. The activity of the PII protein is stimulated by glutamine and inhibited by 2-oxoglutarate. Under glutamate-limiting conditions, PII is uridylylated by GlnD leading to the activation of glutamate synthetase and to the stimulation of NtrC-dependent promoters. Under high concentrations of fixed nitrogen, PII is de-uridylylated leading to the inactivation of the glutamate synthetase pathway and switching off NtrC-dependent promoters . Not all homologues of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see IPR002332 from INTERPRO), but the modification site is preserved in the PII homologue of all species with a member of this family. ; GO: 0008773 [protein-PII] uridylyltransferase activity, 0006807 nitrogen compound metabolic process.
Probab=93.86 E-value=0.35 Score=27.10 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=15.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 9999828786688999899736996322774
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHL 56 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l 56 (100)
++|.-+|+||.++.|...|+.+++||.+-++
T Consensus 707 ~~I~~~D~~~L~~~~a~~la~~~~~v~~A~~ 737 (903)
T TIGR01693 707 VFIYAPDQPGLFAKVAAALAALSLSVHDAQV 737 (903)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 8885088301589999999625881642257
No 92
>PRK03381 PII uridylyl-transferase; Provisional
Probab=93.80 E-value=0.55 Score=26.07 Aligned_cols=66 Identities=11% Similarity=0.194 Sum_probs=49.3
Q ss_pred EEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHHHC
Q ss_conf 765798399999828786688999899736996322774214789818999994----78899899999864
Q 537021.9.peg.3 18 DVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKLSV 85 (100)
Q Consensus 18 ~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i~~ 85 (100)
+.+.....|=+.-.|+||.++.|+.+|.+.|++|..-.+ .+.|+.|.-++-+ .++++++-.++|++
T Consensus 704 ~~s~~~TvlEV~a~DRpGLL~~Ia~~l~~~gl~I~~AkI--~T~Gerv~DvFyVtd~~g~kl~d~~~~~l~~ 773 (781)
T PRK03381 704 TASPDATVLEVRAADRAGLLARLTRALEGAGVDVRWAKV--NTLGSDAVDAFYVTEAAGGPLADARRAAVER 773 (781)
T ss_pred CCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE--CCCCCCEEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 888885899999688177999999999987987988796--2688608999999779989099899999999
No 93
>PRK05092 PII uridylyl-transferase; Provisional
Probab=93.78 E-value=0.55 Score=26.05 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=47.6
Q ss_pred ECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCC-HHHHHHHHC
Q ss_conf 5798399999828786688999899736996322774214789818999994----78899-899999864
Q 537021.9.peg.3 20 DIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSIL-NSVLEKLSV 85 (100)
Q Consensus 20 ~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~-~~vl~~i~~ 85 (100)
+...+.|=+.-.|+||.+..|+.+|++.|++|.+-.. .+-|+.|.-+.=+ ..+++ ++-+++|++
T Consensus 843 S~~~TviEV~a~DRPGLL~~I~~~l~~~~l~I~sAkI--aT~Gerv~DvFyVtd~~G~ki~d~~~~~~l~~ 911 (934)
T PRK05092 843 SNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHI--ATYGERAVDVFYVTDLFGLKITNPARQAAIRR 911 (934)
T ss_pred CCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE--CCCCCEEEEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 8875899999588078999999999988977999896--25576289999997899998899999999999
No 94
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=93.43 E-value=0.18 Score=28.65 Aligned_cols=71 Identities=13% Similarity=0.174 Sum_probs=60.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 9999982878668899989973699632277421478981899999478899899999864988299999997
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEF 97 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i~~ 97 (100)
+|=+.-+|+-|..-.+-.+|+..+||.....+ +..|..-+..-+++-+.-++++.+|+.+|||..||.+.|
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEi--d~~~~IYln~p~l~~~~fs~L~aei~~I~GV~~vr~V~~ 72 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEI--DPIGRIYLNFPELEFESFSSLMAEIRRIPGVTDVRTVPW 72 (511)
T ss_pred CEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEE--CCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf 26898523210089999998654657650452--477737885775688889999999836898552367447
No 95
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=93.35 E-value=0.35 Score=27.11 Aligned_cols=68 Identities=18% Similarity=0.106 Sum_probs=52.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC-CCE--EEEEEEEC-CCCCHHHHHHHHCCCCEEEEE
Q ss_conf 9999982878668899989973699632277421478-981--89999947-889989999986498829999
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS-TEH--AISFLCID-GSILNSVLEKLSVNVTIRFVK 93 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~-g~~--A~~ii~vD-~~i~~~vl~~i~~~~~v~~vr 93 (100)
+|-+.-+|+||-+-++-+-|++.|.||-+.--+|+++ |.. .-..++.| ++...++++.+ +..|+.=.|
T Consensus 7 tldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~-e~~Gi~I~~ 78 (170)
T COG2061 7 TLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLL-EEEGIIIIR 78 (170)
T ss_pred EEEEEECCCCCCHHHHHCCHHHCCCCEEEEEEECCCCCCCCEEEEEEEEECCCHHHHHHHHHH-HHCCCEEEE
T ss_conf 999994488712644432052348618999961374348940489999835627889999999-867948999
No 96
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=0.27 Score=27.74 Aligned_cols=52 Identities=8% Similarity=0.241 Sum_probs=38.0
Q ss_pred EEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE
Q ss_conf 765798399999828786688999899736996322774214789818999994
Q 537021.9.peg.3 18 DVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI 71 (100)
Q Consensus 18 ~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v 71 (100)
+.+.+.+.+=+.-.|+||.++.++.+|++.+.+|.+-+. .+-|+.|.-+.-+
T Consensus 786 t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkI--tT~GErveD~F~v 837 (867)
T COG2844 786 TASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKI--TTFGERVEDVFIV 837 (867)
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEE--CCCCCCCEEEEEE
T ss_conf 657774489999678653799999998745564013253--0346531258999
No 97
>TIGR00691 spoT_relA RelA/SpoT family protein; InterPro: IPR004811 The functions of Escherichia coli RelA and SpoT differ somewhat. RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homolog to SpoT and RelA appears responsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. ; GO: 0015969 guanosine tetraphosphate metabolic process.
Probab=93.14 E-value=0.63 Score=25.78 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=58.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC---HHHHHHHHCCCCEEEEEE
Q ss_conf 39999982878668899989973699632277421478981899999478899---899999864988299999
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL---NSVLEKLSVNVTIRFVKQ 94 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~---~~vl~~i~~~~~v~~vr~ 94 (100)
+-+.+.-.|+-|+++.+.+.|++.++||.+......+.++.+.+-+.++-.=. ..++.+|+..+++..+++
T Consensus 668 ~~I~~~~~~~~~~L~~l~~~i~~~~~ni~~~~~~~~K~~~~~~~~~~~~~~~~~~L~~i~~~ik~~~~v~~~~r 741 (741)
T TIGR00691 668 VEIQIEALDRKGVLSDLTTAISENDSNIVSISTETKKDKREAILNITVEIKDYKHLLKIMKKIKNVEDVIDVKR 741 (741)
T ss_pred EEEEEEEEHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEEEEEECCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 89899861034689999999863872589700100258836899999986087999999998516887588509
No 98
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=92.66 E-value=0.84 Score=25.09 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC-HHHHHHHHCCCCEEEEEE
Q ss_conf 78668899989973699632277421478981899999478899-899999864988299999
Q 537021.9.peg.3 33 ILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL-NSVLEKLSVNVTIRFVKQ 94 (100)
Q Consensus 33 ~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~-~~vl~~i~~~~~v~~vr~ 94 (100)
.|+-+..+...|.++++.|.+.++.++.....-.+.+.+.+..+ +++++.|+++|+|.+|..
T Consensus 152 ~~~~~~~i~~~l~~~~i~i~~v~i~~~~~~~~v~l~v~~~~~~~~~dl~~~L~~i~gV~~V~i 214 (215)
T PRK09977 152 VNGNTVSMLDWFKQQKIKTDLVSLQENEDHEVVTIDITLHATTSIEDLLRLLKGMAGVKGVSI 214 (215)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEC
T ss_conf 358277999999984975899998982888589999997798749999999855999358840
No 99
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.30 E-value=0.6 Score=25.86 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=43.7
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCEEEEEEECCC-CCCEEEEEEEE---CCCCCHHHHHHHHCCCCE
Q ss_conf 998287866889998997369963227742147-89818999994---788998999998649882
Q 537021.9.peg.3 28 IVNADILGIVVFVGNILGEYGINIAHFHLGRSQ-STEHAISFLCI---DGSILNSVLEKLSVNVTI 89 (100)
Q Consensus 28 i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~-~g~~A~~ii~v---D~~i~~~vl~~i~~~~~v 89 (100)
+.=+|+||-+..|...|.+++.||.+.-.+... ..|.--..|.+ |..--+++.++|++.-.+
T Consensus 4 f~L~d~pGslk~v~D~Lr~~~~rI~SILTs~~~~~~g~R~V~IRi~~mD~a~l~~l~e~L~~~~~l 69 (72)
T cd04884 4 FLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRSKENELIEELKAKFTV 69 (72)
T ss_pred EECCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCE
T ss_conf 886899985279999998779859999833676899822899996356577799999999854557
No 100
>PRK08198 threonine dehydratase; Provisional
Probab=92.15 E-value=0.92 Score=24.89 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=45.5
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CEEEEEEEEC---CCCCHHHHHHHHCC
Q ss_conf 98399999828786688999899736996322774214789---8189999947---88998999998649
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST---EHAISFLCID---GSILNSVLEKLSVN 86 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g---~~A~~ii~vD---~~i~~~vl~~i~~~ 86 (100)
-...+.+.-.|+||.+.++.+++++.+.||-..+-.|.... +.+...+.+. .+=-++++++|++.
T Consensus 328 r~~~~~v~i~d~PG~l~~~~~~i~~~~anI~~i~h~R~~~~~~~~~~~v~~~iEt~~~~h~~~i~~~L~~~ 398 (406)
T PRK08198 328 RYLKLRVELPDRPGQLAKLLSIIAELRANVIDVDHDRFSPGLRLGEVEVELTLETRGPEHIDEILAALRDA 398 (406)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHC
T ss_conf 97999998278996799999999757993799998872577886648999999929999999999999978
No 101
>PRK07431 aspartate kinase; Provisional
Probab=91.80 E-value=0.23 Score=28.04 Aligned_cols=57 Identities=18% Similarity=0.117 Sum_probs=30.5
Q ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEEEE--CCCCCCEEEEEEEECCCCCHHHHHHHHC
Q ss_conf 98287866889998997369963227742--1478981899999478899899999864
Q 537021.9.peg.3 29 VNADILGIVVFVGNILGEYGINIAHFHLG--RSQSTEHAISFLCIDGSILNSVLEKLSV 85 (100)
Q Consensus 29 ~~~D~PG~I~~v~~~L~~~~INIa~m~l~--r~~~g~~A~~ii~vD~~i~~~vl~~i~~ 85 (100)
.-.|+||+.+++-+.|++++||+.-..-+ ........+++-+-|-+-..++++++..
T Consensus 277 gv~~~pG~aa~iF~~La~~~InVDmI~Q~~~~~~~~disftv~~~dl~~a~~vl~~~~~ 335 (594)
T PRK07431 277 RVPDRPGIAAQLFEELAAQGVNVDLIIQSTHEGNSNDIAFTVAEAELKKAEAVCEAILP 335 (594)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 68998658999999999739755899862367997635897148789999999999987
No 102
>TIGR01127 ilvA_1Cterm threonine dehydratase; InterPro: IPR005789 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. A form of threonine dehydratase with two copies of the C-terminal domain is described by . This model describes a phylogenetically distinct which branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any domain. Many members of this model are found in species with other isoleucine biosynthetic enzymes.; GO: 0004794 L-threonine ammonia-lyase activity.
Probab=91.76 E-value=1.1 Score=24.49 Aligned_cols=61 Identities=18% Similarity=0.098 Sum_probs=45.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC---CCEEEEEEEECCCCCHHHHHHHHC
Q ss_conf 39999982878668899989973699632277421478---981899999478899899999864
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS---TEHAISFLCIDGSILNSVLEKLSV 85 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~---g~~A~~ii~vD~~i~~~vl~~i~~ 85 (100)
-.+-..=.|+||-|-++...+++.+.||-....-|..+ -|.|...+++ +-..++.+++|++
T Consensus 307 v~I~~~~~D~PG~L~~ll~~~A~~~aNi~~i~hDR~~~~~~~G~a~v~~~L-Et~g~~H~~ei~~ 370 (381)
T TIGR01127 307 VRIETVIPDRPGALYKLLEVIAEERANIVKIEHDRLSKEIPPGFAKVELEL-ETRGKEHLDEILK 370 (381)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEE-EECCHHHHHHHHH
T ss_conf 999999823898669999999981697899997375777786753899998-4088689999999
No 103
>PRK06382 threonine dehydratase; Provisional
Probab=91.63 E-value=0.52 Score=26.20 Aligned_cols=67 Identities=16% Similarity=0.076 Sum_probs=44.8
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CEE--EEEEEE-CCCCCHHHHHHHHCCC
Q ss_conf 798399999828786688999899736996322774214789---818--999994-7889989999986498
Q 537021.9.peg.3 21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST---EHA--ISFLCI-DGSILNSVLEKLSVNV 87 (100)
Q Consensus 21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g---~~A--~~ii~v-D~~i~~~vl~~i~~~~ 87 (100)
.-...+.+.-.|+||.++++.+++++.+.||-..+..|.... +.+ ...+++ |.+=-++++++|++.-
T Consensus 322 gr~~~~~v~i~d~pG~L~~~~~~i~~~~~ni~~i~~~r~~~~~~~~~~~v~~~iEt~~~~h~~~i~~~l~~~G 394 (400)
T PRK06382 322 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALREMG 394 (400)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 9979999986889977999999970689957999987602557876268999998099999999999999878
No 104
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.77 E-value=0.53 Score=26.15 Aligned_cols=44 Identities=18% Similarity=0.094 Sum_probs=30.1
Q ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECC
Q ss_conf 982878668899989973699632277421478981899999478
Q 537021.9.peg.3 29 VNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDG 73 (100)
Q Consensus 29 ~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~ 73 (100)
.=.|+||+.+++-+.|++++|||.-..-+.. .++.+-....+.+
T Consensus 7 ~vpd~pg~aa~iF~~LA~~~InVDmIvQ~~~-~~~~~~isFTv~~ 50 (61)
T cd04891 7 GVPDKPGVAAKIFSALAEAGINVDMIVQSVS-RGGTTDISFTVPK 50 (61)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEEEECCC-CCCCCEEEEEECH
T ss_conf 8999975799999999985981799986588-8995218998249
No 105
>TIGR01693 UTase_glnD protein-P-II uridylyltransferase; InterPro: IPR010043 This entry describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for signal-transduction protein PII, and acts as the sensory component of the nitrogen regulation (ntr) system . The ntr system modulates nitrogen metabolism in response to the prevailing nitrogen source and the requirements of the cell. During nitrogen fixation, ammonia and 2-oxoglutarate can be used to produce glutamate. The activity of the PII protein is stimulated by glutamine and inhibited by 2-oxoglutarate. Under glutamate-limiting conditions, PII is uridylylated by GlnD leading to the activation of glutamate synthetase and to the stimulation of NtrC-dependent promoters. Under high concentrations of fixed nitrogen, PII is de-uridylylated leading to the inactivation of the glutamate synthetase pathway and switching off NtrC-dependent promoters . Not all homologues of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see IPR002332 from INTERPRO), but the modification site is preserved in the PII homologue of all species with a member of this family. ; GO: 0008773 [protein-PII] uridylyltransferase activity, 0006807 nitrogen compound metabolic process.
Probab=90.60 E-value=0.8 Score=25.20 Aligned_cols=64 Identities=17% Similarity=0.267 Sum_probs=48.3
Q ss_pred EECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECC----CCCH-HHHHHHH
Q ss_conf 6579839999982878668899989973699632277421478981899999478----8998-9999986
Q 537021.9.peg.3 19 VDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDG----SILN-SVLEKLS 84 (100)
Q Consensus 19 ~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~----~i~~-~vl~~i~ 84 (100)
.+.....+=+.-.|+||.++.||.+|.+.+.+|.+-++ .+-|+.|.=+.-|-. ++.+ +..+.|+
T Consensus 827 as~~~T~~E~~a~DrpGLL~~v~~~l~~~~l~i~~AkI--~T~GE~A~D~Fyvt~~~g~~l~~~~~~~~L~ 895 (903)
T TIGR01693 827 ASKKATVMEVRALDRPGLLAAVGKTLEELGLSIQSAKI--TTLGEKAEDVFYVTDLFGLKLNDEEEEQRLE 895 (903)
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEE--ECCCCCEEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 15454488886378646289999998750675343456--0546645887764054575220278862389
No 106
>PRK08526 threonine dehydratase; Provisional
Probab=89.54 E-value=1.8 Score=23.37 Aligned_cols=65 Identities=14% Similarity=0.109 Sum_probs=45.3
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CEEEEEE--EEC-CCCCHHHHHHHHC
Q ss_conf 798399999828786688999899736996322774214789---8189999--947-8899899999864
Q 537021.9.peg.3 21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST---EHAISFL--CID-GSILNSVLEKLSV 85 (100)
Q Consensus 21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g---~~A~~ii--~vD-~~i~~~vl~~i~~ 85 (100)
+-...+.+.-.|+||.++++.+++++.+.||-..+-.|.... +.+...+ ++- .+=-++++++|++
T Consensus 324 gr~~~~~v~~~d~pG~l~~~~~~i~~~~~ni~~~~~~r~~~~~~~~~~~v~~~~Et~~~~h~~~l~~~l~~ 394 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKIANANIVKIDYDRFSTKLDYGDANISITLETKGKEHQEEIRKILTE 394 (403)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHH
T ss_conf 99899999868899679999999725899579999886257788773699999994999999999999998
No 107
>PRK07334 threonine dehydratase; Provisional
Probab=89.26 E-value=1.9 Score=23.26 Aligned_cols=65 Identities=26% Similarity=0.260 Sum_probs=45.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CEEEEEEEE---CCCCCHHHHHHHHCC
Q ss_conf 98399999828786688999899736996322774214789---818999994---788998999998649
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST---EHAISFLCI---DGSILNSVLEKLSVN 86 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g---~~A~~ii~v---D~~i~~~vl~~i~~~ 86 (100)
-...+.+.-.|+||.+.++.+++++.+.||-..+-.|.... +.+...+.+ |.+=-++++++|++-
T Consensus 322 r~~~~~v~ipd~PG~l~~~~~~i~~~~ani~~i~h~r~~~~~~~~~~~v~~~~Et~~~~h~~~l~~~L~~~ 392 (399)
T PRK07334 322 RLARLRVDIRDRPGALAKVTALIGEAGANIIEVHHQRLFTTLPAKGAELELVIETRDAAHIQEVMAALRAA 392 (399)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHC
T ss_conf 98999998888996799999998217997699998871577887738999999939999999999999977
No 108
>PRK07431 aspartate kinase; Provisional
Probab=88.18 E-value=0.79 Score=25.23 Aligned_cols=74 Identities=12% Similarity=0.105 Sum_probs=47.8
Q ss_pred CEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEC-------CCCCCEEEEEEEECCCCCHHHHHHHHCC
Q ss_conf 989976579839999982878668899989973699632277421-------4789818999994788998999998649
Q 537021.9.peg.3 14 EINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGR-------SQSTEHAISFLCIDGSILNSVLEKLSVN 86 (100)
Q Consensus 14 g~~v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r-------~~~g~~A~~ii~vD~~i~~~vl~~i~~~ 86 (100)
|+.+|-. +-..-+..=.|+||+-+++=..|++++||+.-. +.. .......+++-.-|-+-..++++++++-
T Consensus 432 Gva~d~~-qakiti~~vpD~PGiAa~iF~~la~~~inVDMI-vQn~~~~~~~~~~tdisFTv~~~d~~~a~~~l~~~~~~ 509 (594)
T PRK07431 432 GVALDRN-QAQLSIRNVPDRPGMAASIFSALAEANISVDMI-VQSQRCRIDGVPTRDISFTVPKDDREAAQKALAPLAAK 509 (594)
T ss_pred EEEECCC-CEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEE-EECCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 5660477-107997379999747999989998769727899-85675446899851189971588999999999999876
Q ss_pred CCE
Q ss_conf 882
Q 537021.9.peg.3 87 VTI 89 (100)
Q Consensus 87 ~~v 89 (100)
-+.
T Consensus 510 ~~~ 512 (594)
T PRK07431 510 LPG 512 (594)
T ss_pred CCC
T ss_conf 598
No 109
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=87.80 E-value=1 Score=24.67 Aligned_cols=49 Identities=29% Similarity=0.289 Sum_probs=33.3
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf 8287866889998997369963227742147898189999947889989999986
Q 537021.9.peg.3 30 NADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS 84 (100)
Q Consensus 30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~ 84 (100)
-.+.||+-+++-+.|+++||||.... .+ +..++++ +++.--+..++.|.
T Consensus 10 m~~~~Gvaarif~aL~~~~Ini~mIs---sS--E~~Is~v-V~~~~~~~Av~~Lh 58 (63)
T cd04936 10 MRSHPGVAAKMFEALAEAGINIEMIS---TS--EIKISCL-IDEDDAEKAVRALH 58 (63)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEE---CC--CCEEEEE-ECHHHHHHHHHHHH
T ss_conf 47892299999999998799859998---35--6669999-82999999999999
No 110
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=87.68 E-value=1.3 Score=24.12 Aligned_cols=50 Identities=34% Similarity=0.467 Sum_probs=32.4
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHH
Q ss_conf 828786688999899736996322774214789818999994788998999998
Q 537021.9.peg.3 30 NADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKL 83 (100)
Q Consensus 30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i 83 (100)
-.++||+-+++-+.|++++|||--.. +...+..+++. +++.-.+..+..|
T Consensus 11 m~~~~GvaariF~~La~~~INI~mIs---Q~sSE~sIs~v-V~~~d~~~Av~aL 60 (80)
T cd04921 11 MVGVPGIAARIFSALARAGINVILIS---QASSEHSISFV-VDESDADKALEAL 60 (80)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEE---CCCCCCEEEEE-ECHHHHHHHHHHH
T ss_conf 68997489999999998799789997---37876569999-8189999999999
No 111
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=86.66 E-value=0.86 Score=25.05 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=29.2
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEE
Q ss_conf 998287866889998997369963227742147898189999
Q 537021.9.peg.3 28 IVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFL 69 (100)
Q Consensus 28 i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii 69 (100)
=.+...||++++-.+.|+++|||+-.++ +.....-+.++
T Consensus 9 G~~m~~~gvlar~~~AL~~~gInv~a~~---Q~~r~vnvqFV 47 (66)
T cd04915 9 GRDLSTPGVLARGLAALAEAGIEPIAAH---QSMRNVDVQFV 47 (66)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEEE---CCCCEEEEEEE
T ss_conf 5788744279999999998899789886---47850368999
No 112
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=86.65 E-value=0.98 Score=24.74 Aligned_cols=50 Identities=30% Similarity=0.405 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf 287866889998997369963227742147898189999947889989999986
Q 537021.9.peg.3 31 ADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS 84 (100)
Q Consensus 31 ~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~ 84 (100)
.+.||+.+++-+.|++++|||-...-+ ..+..+.++ +|+.--+.+++.|.
T Consensus 11 ~~~~gi~a~~f~~L~~~~Inv~~isq~---~se~~Is~v-V~~~d~~~av~~Lh 60 (65)
T cd04892 11 RGTPGVAARIFSALAEAGINIIMISQG---SSEVNISFV-VDEDDADKAVKALH 60 (65)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEC---CCCCEEEEE-EEHHHHHHHHHHHH
T ss_conf 778059999999999879987998835---863059999-84899999999999
No 113
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.36 E-value=1.1 Score=24.52 Aligned_cols=50 Identities=24% Similarity=0.251 Sum_probs=33.3
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHH
Q ss_conf 828786688999899736996322774214789818999994788998999998
Q 537021.9.peg.3 30 NADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKL 83 (100)
Q Consensus 30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i 83 (100)
-+.+||+-+++-+.|++++|||.-.. +...+..++++ +|+.-.+..+..|
T Consensus 11 M~~~~Gvaar~F~~La~~~INI~mIs---QGsSEinIs~v-V~~~d~~~Av~al 60 (66)
T cd04919 11 MKNMIGIAGRMFTTLADHRINIEMIS---QGASEINISCV-IDEKDAVKALNII 60 (66)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEE---CCCCEEEEEEE-EEHHHHHHHHHHH
T ss_conf 03596679999999998799879885---27860479999-8289999999999
No 114
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.85 E-value=1.2 Score=24.37 Aligned_cols=50 Identities=24% Similarity=0.259 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf 287866889998997369963227742147898189999947889989999986
Q 537021.9.peg.3 31 ADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS 84 (100)
Q Consensus 31 ~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~ 84 (100)
...||+-+++-+.|++++|||.-.. +...+..++++ ++++-.+..++.|.
T Consensus 12 ~~~~GvaariF~aLa~~~INI~mIs---QgsSE~sIs~~-V~~~d~~~Av~alh 61 (66)
T cd04924 12 RGTPGVAGRVFGALGKAGINVIMIS---QGSSEYNISFV-VAEDDGWAAVKAVH 61 (66)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEE---CCCCCCEEEEE-ECHHHHHHHHHHHH
T ss_conf 7896779999999997799789997---37763079999-94899999999999
No 115
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.76 E-value=1.3 Score=24.02 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=34.1
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf 8287866889998997369963227742147898189999947889989999986
Q 537021.9.peg.3 30 NADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS 84 (100)
Q Consensus 30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~ 84 (100)
...+||+-+++-+.|++++|||.-.. +...+..+++. +++.--+..++.|.
T Consensus 11 M~~~~GvaariF~~L~~~~INI~mIs---QgsSE~~Is~~-V~~~d~~~Av~alh 61 (66)
T cd04916 11 MKNTVGVSARATAALAKAGINIRMIN---QGSSEISIMIG-VHNEDADKAVKAIY 61 (66)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEE---CCCCCCEEEEE-ECHHHHHHHHHHHH
T ss_conf 16793589999999998799889986---27761159999-81899999999999
No 116
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.28 E-value=1.9 Score=23.24 Aligned_cols=48 Identities=27% Similarity=0.290 Sum_probs=31.5
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHH
Q ss_conf 828786688999899736996322774214789818999994788998999998
Q 537021.9.peg.3 30 NADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKL 83 (100)
Q Consensus 30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i 83 (100)
-.++||+-+++-+.|+++||||.... .+ +..++++ +++.--+..+..|
T Consensus 10 m~~~~Gvaarif~aL~~~~Inv~~is---sS--E~~Is~v-V~~~d~~~Av~aL 57 (63)
T cd04923 10 MRSHPGVAAKMFKALAEAGINIEMIS---TS--EIKISCL-VDEDDAEKAVRAL 57 (63)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEE---CC--CCEEEEE-EEHHHHHHHHHHH
T ss_conf 47894399999999998799879998---25--6779999-8089999999999
No 117
>TIGR00657 asp_kinases aspartate kinase; InterPro: IPR001341 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate kinase (2.7.2.4 from EC) (AK) catalyzes the first reaction in the aspartate pathway; the phosphorylation of aspartate. The product of this reaction can then be used in the biosynthesis of lysine or in the pathway leading to homoserine, which participates in the biosynthesis of threonine, isoleucine and methionine . In bacteria there are three different aspartate kinase isozymes which differ in sensitivity to repression and inhibition by Lys, Met and Thr. AK1 and AK2 are bifunctional enzymes which both consist of an N-terminal AK domain and a C-terminal homoserine dehydrogenase domain. AK1 is involved in threonine biosynthesis and AK2, in that of methionine. The third isozyme, AK3 is monofunctional and involved in lysine synthesis. In archaea and plants there may be a single isozyme of AK which in plants is multifunctional. This entry represents a region encoding aspartate kinase activity found in both the monofunctional and bifunctional enzymes. Synonym(s): Aspartokinase; GO: 0004072 aspartate kinase activity, 0008652 amino acid biosynthetic process.
Probab=84.18 E-value=3.5 Score=21.85 Aligned_cols=57 Identities=21% Similarity=0.173 Sum_probs=33.4
Q ss_pred EEEEECC--CCCHHHHHHHHHHHCC----CCEEEEE----EECC-CCCCEEEEEEEECCCC--CHHHHHH
Q ss_conf 9999828--7866889998997369----9632277----4214-7898189999947889--9899999
Q 537021.9.peg.3 26 ICIVNAD--ILGIVVFVGNILGEYG----INIAHFH----LGRS-QSTEHAISFLCIDGSI--LNSVLEK 82 (100)
Q Consensus 26 L~i~~~D--~PG~I~~v~~~L~~~~----INIa~m~----l~r~-~~g~~A~~ii~vD~~i--~~~vl~~ 82 (100)
+.-.... .||++++|-++|++++ |||..+. -+.. -..+..-.-+.+|.+- -+...+.
T Consensus 342 v~g~~~~~~~~g~~~~vf~~l~~~~~~l~i~v~~I~~~y~Q~~~~~~~~~~di~f~v~~~~i~~~~a~~~ 411 (504)
T TIGR00657 342 VSGLGMKGSMPGILAEVFGALAEAGHGLLINVDLISDKYKQSSSKIETSKTDISFTVDKEDIEADQAKEL 411 (504)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCHHHHHHH
T ss_conf 8522678751027889999986237942632134675303556764015305999962535776899999
No 118
>PRK06635 aspartate kinase; Reviewed
Probab=84.06 E-value=1.4 Score=23.94 Aligned_cols=61 Identities=16% Similarity=0.085 Sum_probs=37.1
Q ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC--EEEEEEEECCCCCHHHHHHHHCCCCE
Q ss_conf 98287866889998997369963227742147898--18999994788998999998649882
Q 537021.9.peg.3 29 VNADILGIVVFVGNILGEYGINIAHFHLGRSQSTE--HAISFLCIDGSILNSVLEKLSVNVTI 89 (100)
Q Consensus 29 ~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~--~A~~ii~vD~~i~~~vl~~i~~~~~v 89 (100)
...++||+.+++-+.|++++|||.-...+-...+. ..+.+-.-|.+-..++++++.+-...
T Consensus 268 ~~~~~~G~~~~vf~~l~~~~i~vd~Isq~~s~~~~~~is~~v~~~d~~~~~~~l~~~~~~~~~ 330 (402)
T PRK06635 268 GVPDKPGIAAQIFGPLADANINVDMIVQNVSEDGKTDLTFTVPRSDLEKALELLEEVKDEIGA 330 (402)
T ss_pred CCCCCCCHHHHHHHHHHHCCEEEEEEEEECCCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCC
T ss_conf 478866689999888874353678999712789960189996388899999999999974698
No 119
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=82.85 E-value=4.2 Score=21.40 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=39.2
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC---------CCEEEEEEEECCCCCH--HHHHHHHCC
Q ss_conf 99982878668899989973699632277421478---------9818999994788998--999998649
Q 537021.9.peg.3 27 CIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS---------TEHAISFLCIDGSILN--SVLEKLSVN 86 (100)
Q Consensus 27 ~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~---------g~~A~~ii~vD~~i~~--~vl~~i~~~ 86 (100)
++-.+=.|..|+.|+..++++|.||...+ |-+. ...|..-+.+-+++.+ .+-.++.++
T Consensus 4 lLgr~lta~~la~Vs~~ia~~glNID~I~--RLSgr~~l~~~~~~p~aciE~svrG~~~d~~~lr~~l~~l 72 (84)
T cd04871 4 LLGRPLTAEQLAAVTRVVADQGLNIDRIR--RLSGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLEL 72 (84)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEEE--ECCCCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHH
T ss_conf 96597999999999999997699966786--1557765545678960899999980578889999999998
No 120
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=82.69 E-value=4.3 Score=21.36 Aligned_cols=76 Identities=11% Similarity=0.044 Sum_probs=63.2
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHH-HHHHCCCCEEEEEEEEEE
Q ss_conf 8399999828786688999899736996322774214789818999994788998999-998649882999999974
Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVL-EKLSVNVTIRFVKQFEFN 98 (100)
Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl-~~i~~~~~v~~vr~i~~~ 98 (100)
.|.|-+.-+++|+.+-+|-.+.-..|.-+-+|+.+....++.+-.-+.+|++=|.++| ..|+++=+|..|.....+
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~R~~~lL~~QLeKl~Dv~~V~i~~~~ 79 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSDRSVDLLTSQLEKLYDVAHVEITQSE 79 (86)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 48982461679589999998865157599985253112366305999985898868999999877112158987304
No 121
>pfam07881 Fucose_iso_N1 L-fucose isomerase, first N-terminal domain. The members of this family are similar to L-fucose isomerase expressed by E. coli (EC:5.3.1.3). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues.
Probab=82.04 E-value=3.8 Score=21.64 Aligned_cols=66 Identities=21% Similarity=0.203 Sum_probs=43.5
Q ss_pred CEEEEEECC--CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHC
Q ss_conf 989976579--839999982878668899989973699632277421478981899999478899899999864
Q 537021.9.peg.3 14 EINFDVDIG--RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSV 85 (100)
Q Consensus 14 g~~v~~~~~--~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~ 85 (100)
.+.+++.|. ++.+.+.+.++||+++-.+..=+-.+.-+-.+...-+...+ --|..+|++++++|..
T Consensus 91 ~eTmdm~~~~pkavwgfngterPGaVylaAa~aa~~Q~Glpaf~IyG~~vQd------~~D~~iP~dV~eKlLr 158 (171)
T pfam07881 91 SETMDMDPFAPKAIWGFNGTERPGAVYLAAALAAHAQKGIPAFRIYGHDVQD------ADDTSIPEDVLEKLLR 158 (171)
T ss_pred CEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCC------CCCCCCCHHHHHHHHH
T ss_conf 4114526678776786358878729999998777752586220114643446------7767472889999999
No 122
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=81.58 E-value=2.4 Score=22.74 Aligned_cols=50 Identities=24% Similarity=0.242 Sum_probs=32.4
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHH
Q ss_conf 828786688999899736996322774214789818999994788998999998
Q 537021.9.peg.3 30 NADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKL 83 (100)
Q Consensus 30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i 83 (100)
-...||+-+++-+.|++++|||.-.. +...+..++++ +++.-.+..++.|
T Consensus 11 M~~~~Gvaar~F~aL~~~~INi~mIs---QgsSE~sIs~~-V~~~d~~~Av~~l 60 (66)
T cd04922 11 MAGTPGVAATFFSALAKANVNIRAIA---QGSSERNISAV-IDEDDATKALRAV 60 (66)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEE---CCCCCCEEEEE-EEHHHHHHHHHHH
T ss_conf 67895779999999998899789996---48873279999-8089999999999
No 123
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=81.15 E-value=1.8 Score=23.33 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.8
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf 82878668899989973699632277
Q 537021.9.peg.3 30 NADILGIVVFVGNILGEYGINIAHFH 55 (100)
Q Consensus 30 ~~D~PG~I~~v~~~L~~~~INIa~m~ 55 (100)
-...||+-+++-+.|++.||||....
T Consensus 11 M~~~pGVaa~~f~aL~~~~InI~~is 36 (64)
T cd04937 11 IRGVPGVMAKIVGALSKEGIEILQTA 36 (64)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 77885299999999997899579997
No 124
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=80.65 E-value=5 Score=21.02 Aligned_cols=49 Identities=24% Similarity=0.230 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf 87866889998997369963227742147898189999947889989999986
Q 537021.9.peg.3 32 DILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS 84 (100)
Q Consensus 32 D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~ 84 (100)
..||+.++|-++|++++||+..+.-+-... + +.+.+++...+..++.+.
T Consensus 319 ~~~g~~a~if~~l~~~~i~v~~I~q~~~~~-~---i~~~v~~~~~~~a~~~l~ 367 (447)
T COG0527 319 GMVGFAARVFGILAEAGINVDLITQSISEV-S---ISFTVPESDAPRALRALL 367 (447)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEEECCCCC-E---EEEEECHHHHHHHHHHHH
T ss_conf 652479999999997599679999236787-5---999973445789999999
No 125
>PRK08639 threonine dehydratase; Validated
Probab=79.05 E-value=5.8 Score=20.67 Aligned_cols=65 Identities=6% Similarity=-0.011 Sum_probs=44.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCC-CHHHHHHHHCC
Q ss_conf 98399999828786688999899736996322774214789--8189999947889-98999998649
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSI-LNSVLEKLSVN 86 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i-~~~vl~~i~~~ 86 (100)
-.+.+.++-.|+||.+.++.+.+...+-||-.++-.|.... +.+++-+++.++- -+++++++++.
T Consensus 333 r~~~~~v~~pd~PG~l~~f~~~~lg~~~~It~f~y~r~~~~~~~~v~vgie~~~~~~~~~l~~~l~~~ 400 (418)
T PRK08639 333 LKHYFIVNFPQRPGALREFLDDVLGPDDDITRFEYLKKNNRETGPVLIGIELKDAEDYDGLLARMEAF 400 (418)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHHC
T ss_conf 86999997899997699999997299985689987862688704599999959877899999999977
No 126
>PRK09436 thrA bifunctional aspartokinase I/homeserine dehydrogenase I; Provisional
Probab=78.23 E-value=6.2 Score=20.53 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=21.5
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf 82878668899989973699632277
Q 537021.9.peg.3 30 NADILGIVVFVGNILGEYGINIAHFH 55 (100)
Q Consensus 30 ~~D~PG~I~~v~~~L~~~~INIa~m~ 55 (100)
..++||+.+++-+.|++++|||.-..
T Consensus 325 m~g~~G~a~riF~~L~~~~InV~lIs 350 (817)
T PRK09436 325 MKGMVGMASRVFAALSRAGISVVLIT 350 (817)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 78851089999999998699779985
No 127
>PRK09034 aspartate kinase; Reviewed
Probab=76.09 E-value=6.5 Score=20.42 Aligned_cols=54 Identities=13% Similarity=0.131 Sum_probs=34.8
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEE--ECCCCCHHHHHHHHCC
Q ss_conf 82878668899989973699632277421478981899999--4788998999998649
Q 537021.9.peg.3 30 NADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLC--IDGSILNSVLEKLSVN 86 (100)
Q Consensus 30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~--vD~~i~~~vl~~i~~~ 86 (100)
-...||+.+++-++|++++||+..+.. +.....+.+-. .+.+..+++++++++.
T Consensus 318 m~~~~g~~~~if~~l~~~~isv~~i~t---s~~~is~~v~~~~~~~~~~~~~~~el~~~ 373 (450)
T PRK09034 318 MNREVGFGRKILQILEDHNISYEHMPS---GIDDLSIIIREKQLTNEKEDEILNEIKQE 373 (450)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEEC---CCCEEEEEECHHHCCHHHHHHHHHHHHHH
T ss_conf 677514899999999982994886523---77548999723330389999999999865
No 128
>PRK09181 aspartate kinase; Validated
Probab=75.34 E-value=4.9 Score=21.06 Aligned_cols=50 Identities=16% Similarity=0.064 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHC
Q ss_conf 878668899989973699632277421478981899999478899899999864
Q 537021.9.peg.3 32 DILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSV 85 (100)
Q Consensus 32 D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~ 85 (100)
..||+.+++-++|++++||+..+.. +... -...+..|....++++++|++
T Consensus 342 ~~~g~~~~if~~l~~~~I~v~~~~s---s~~s-isi~~~~~~~~~~~~~~~l~~ 391 (476)
T PRK09181 342 GEDGYDAEIMEILTRHKVRYISKDT---NANT-ITHYLSGSLKSLKRVLADLEK 391 (476)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECC---CCCE-EEEEECCCHHHHHHHHHHHHH
T ss_conf 8858899999999975996898525---7763-899946999999999999986
No 129
>PRK08210 aspartate kinase I; Reviewed
Probab=73.50 E-value=5 Score=21.03 Aligned_cols=51 Identities=18% Similarity=0.129 Sum_probs=32.3
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCC
Q ss_conf 828786688999899736996322774214789818999994788998999998649
Q 537021.9.peg.3 30 NADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVN 86 (100)
Q Consensus 30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~ 86 (100)
..+.||+.+++-+.|++++|||.....+ ..+..++ ++....+.+.+.++++
T Consensus 279 ~~~~~g~~~~if~~la~~~IsVd~Is~s---~~~i~ft---v~~~d~~~~~~il~el 329 (405)
T PRK08210 279 KENAYDLQQEVFKALAEAGISVDLINIF---PTEVVFT---VSDEDSEKAKEILEEL 329 (405)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEEEC---CCCEEEE---ECHHHHHHHHHHHHHC
T ss_conf 8996168999999999849817999933---4767999---7589999999999974
No 130
>PRK08841 aspartate kinase; Validated
Probab=73.13 E-value=8.6 Score=19.78 Aligned_cols=55 Identities=16% Similarity=0.287 Sum_probs=37.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf 3999998287866889998997369963227742147898189999947889989999986
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS 84 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~ 84 (100)
-.+-+.-.+.||+.+++-+.|++.||||.... + .+..++++ +|+.-.+..+..|.
T Consensus 319 a~VsvVG~~~~Gva~~~f~aLa~~~InI~~is---~--SEinIS~v-V~~~d~~kAv~aLH 373 (392)
T PRK08841 319 SLLTLVGLEANGMVDHACNQLAQQGIDVHQCS---T--EPLSSMLV-VDPANVDRAANILH 373 (392)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEE---E--CCCEEEEE-ECHHHHHHHHHHHH
T ss_conf 49999889985599999999997899879998---0--35789999-84999999999999
No 131
>PRK09084 aspartate kinase III; Validated
Probab=72.79 E-value=8.7 Score=19.74 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEC------CCCCHHHHHHHHCCCCEE
Q ss_conf 287866889998997369963227742147898189999947------889989999986498829
Q 537021.9.peg.3 31 ADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCID------GSILNSVLEKLSVNVTIR 90 (100)
Q Consensus 31 ~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD------~~i~~~vl~~i~~~~~v~ 90 (100)
.++||+++++-+.|++++|||..+..+ ....++.+-..+ ....+++++++++...+.
T Consensus 317 ~~~~G~~~~if~~l~~~~I~vd~i~ss---e~sis~~i~~~~~~~~~~~~~~~~~~~el~~~~~v~ 379 (447)
T PRK09084 317 LHAHGFLAEVFGILARHKISVDLITTS---EVSVSLTLDTTGSTSTGDTLLTQALLMELSQLCRVE 379 (447)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECC---CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 632018999999999759927999804---653789970411455566899999999875048489
No 132
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.92 E-value=9.7 Score=19.50 Aligned_cols=63 Identities=10% Similarity=0.061 Sum_probs=41.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC-EEEEEEEECC--CCCHHHHHHHHCC
Q ss_conf 3999998287866889998997369963227742147898-1899999478--8998999998649
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTE-HAISFLCIDG--SILNSVLEKLSVN 86 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~-~A~~ii~vD~--~i~~~vl~~i~~~ 86 (100)
-+|++.-+|.+|-++++..++-++++|+........++.+ ..=.++++|. .--..++..|++.
T Consensus 42 ~~llFsLk~~~gsL~r~LkvFe~~~~~l~HiESRpsk~~~~~~e~fV~ce~~~~~l~~lI~sLr~v 107 (115)
T cd04930 42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQV 107 (115)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHH
T ss_conf 889999667753699999999864846999762455678876379999605586699999999998
No 133
>PRK06291 aspartate kinase; Provisional
Probab=69.35 E-value=6.8 Score=20.32 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=22.7
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf 82878668899989973699632277
Q 537021.9.peg.3 30 NADILGIVVFVGNILGEYGINIAHFH 55 (100)
Q Consensus 30 ~~D~PG~I~~v~~~L~~~~INIa~m~ 55 (100)
-.+.||+.+++-+.|++++|||....
T Consensus 331 m~~~~g~~~~if~~l~~~~i~v~~i~ 356 (466)
T PRK06291 331 MVGVPGVAARIFSALAREGVNVIMIS 356 (466)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 55300068999899987398089998
No 134
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=68.28 E-value=10 Score=19.42 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=50.3
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCE
Q ss_conf 798399999828786688999899736996322774214789818999994788998999998649882
Q 537021.9.peg.3 21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTI 89 (100)
Q Consensus 21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v 89 (100)
|.-+||++.+-|+-| ++++=++=|. +||.++.++||....-+..+++...+.|+++...
T Consensus 872 PnANTiIIe~AD~fG-LsQLyQLRGR---------VGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~~ 930 (1139)
T COG1197 872 PNANTIIIERADKFG-LAQLYQLRGR---------VGRSNKQAYAYFLYPPQKALTEDAEKRLEAIASF 930 (1139)
T ss_pred CCCCEEEEECCCCCC-HHHHHHHCCC---------CCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 787558896543345-7888875165---------4776762899996267554587899999999723
No 135
>PRK10689 transcription-repair coupling factor; Provisional
Probab=67.22 E-value=11 Score=19.14 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=45.2
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCC
Q ss_conf 79839999982878668899989973699632277421478981899999478899899999864988
Q 537021.9.peg.3 21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVT 88 (100)
Q Consensus 21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~ 88 (100)
|.-+|+++.+-|+-| ++++-++=|. +||.++..+||....-++.++++..+.|+++..
T Consensus 878 p~ant~ii~~a~~~g-l~ql~qlrgr---------vgr~~~~ayaYll~~~~~~lt~~A~kRL~ai~~ 935 (1148)
T PRK10689 878 PTANTIIIERADHFG-LAQLHQLRGR---------VGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIAS 935 (1148)
T ss_pred CCCCEEEEECHHHCC-HHHHHHHCCC---------CCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 788479997532145-5777754365---------577887079999867877789899999999997
No 136
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.76 E-value=12 Score=19.02 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=45.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECC-------CCCHHHHHHHHCC
Q ss_conf 9999982878668899989973699632277421478981899999478-------8998999998649
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDG-------SILNSVLEKLSVN 86 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~-------~i~~~vl~~i~~~ 86 (100)
.|=+.-.|++|.+-.|+..|.+-...|....++....|...=++.-+|. .=.+|+.+.+++.
T Consensus 2 lLk~~~~DR~GLLHDVt~~L~eLeltI~rvKVsTtPdgrv~DlFfiTD~r~ll~tk~R~~e~~~~l~~v 70 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAV 70 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHEEEEEEEEEEECCCCCCEEEEEEEECCHHHCCCHHHHHHHHHHHHHH
T ss_conf 489998256733888999987612788998987189982899999927556646256679999999998
No 137
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.28 E-value=9.3 Score=19.60 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=31.1
Q ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCC
Q ss_conf 98287866889998997369963227742147898189999947889
Q 537021.9.peg.3 29 VNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI 75 (100)
Q Consensus 29 ~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i 75 (100)
...-.+|+.+++-+.|+++||||.-.. +...+..++++--+++.
T Consensus 9 ~~~~~~~ia~r~F~al~~~gvNv~mIs---QGaSe~NIs~vV~~~d~ 52 (65)
T cd04918 9 NVQRSSLILERAFHVLYTKGVNVQMIS---QGASKVNISLIVNDSEA 52 (65)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEE---CCCCCCCEEEEECHHHH
T ss_conf 343341789999999986898479871---78873428999807899
No 138
>TIGR00656 asp_kin_monofn asparate kinase, monofunctional class; InterPro: IPR005260 Aspartate kinase catalyzes the first step in the biosynthesis of Lys (via its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of these three amino acid end products . The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenase, which catalyses the next step in the biosynthesis of these amino acids. Inn contrast, the Lys-sensitive form (III) is a monofunctional enzyme; homoserine dehydrogenase is not part of the Lys biosynthetic pathway. This entry represents a subclass of aspartate kinases that are mostly Lys-sensitive and are not fused to homoserine dehydrogenase. The E. coli enzyme is a homodimer, while the Bacillus and Corynebacterium enzymes are alpha 2/beta 2 heterotetramers, where the beta subunit is translated from an in-phase alternative initiator at Met-246 , . The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases. ; GO: 0004072 aspartate kinase activity, 0009058 biosynthetic process.
Probab=65.90 E-value=12 Score=19.04 Aligned_cols=56 Identities=20% Similarity=0.089 Sum_probs=39.2
Q ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEEEECCC-CCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf 98287866889998997369963227742147-898189999947889989999986
Q 537021.9.peg.3 29 VNADILGIVVFVGNILGEYGINIAHFHLGRSQ-STEHAISFLCIDGSILNSVLEKLS 84 (100)
Q Consensus 29 ~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~-~g~~A~~ii~vD~~i~~~vl~~i~ 84 (100)
.-.++||+++.+...|+++++|+.....+... +.+..+.+-..|.+-..+.+....
T Consensus 336 ~~~~~~g~~~~~~~~la~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~ 392 (480)
T TIGR00656 336 GMLGKPGFLAELFGALAERGINVDLISQTPSEDKTSISLTVDEEDADEAVRALKDES 392 (480)
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf 323554058899988741574289985067766330589972466068999887654
No 139
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.72 E-value=10 Score=19.39 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHHHCCC
Q ss_conf 8786688999899736996322774214789818999994----7889989999986498
Q 537021.9.peg.3 32 DILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKLSVNV 87 (100)
Q Consensus 32 D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i~~~~ 87 (100)
-.+|++++|=++|++|++-+.-...+- -..++++=.. +.+..+.++++|.++-
T Consensus 13 ~a~GFLa~VF~if~~h~iSVDlitTSE---vsVslTlD~~~~~~~~~~l~~Ll~eL~~~c 69 (75)
T cd04935 13 QQVGFLADVFAPFKKHGVSVDLVSTSE---TNVTVSLDPDPNGLDPDVLDALLDDLNQIC 69 (75)
T ss_pred HHCCHHHHHHHHHHHCCCCEEEEEEEE---EEEEEEECCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 562649999999998497178997015---799999758876546689999999998527
No 140
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=62.83 E-value=6 Score=20.59 Aligned_cols=47 Identities=28% Similarity=0.341 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHH
Q ss_conf 878668899989973699632277421478981899999478899899999
Q 537021.9.peg.3 32 DILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEK 82 (100)
Q Consensus 32 D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~ 82 (100)
..||+.+++-+.|+++++||....-+-. ...++ +-++++-.+++++.
T Consensus 12 ~~~~~~~~if~~L~~~~i~v~~I~q~~s---~~~is-f~v~~~~~~~a~~~ 58 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQSES---EVNIS-FTVDESDLEKAVKA 58 (60)
T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHCCCC---CCEEE-EEEEHHHHHHHHHH
T ss_conf 8837999999999984999889402677---43399-99848999999997
No 141
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase; InterPro: IPR005961 This entry represents the large, tetrameric form of phenylalanine-4-hydroxylase (PAH; 1.14.16.1 from EC), as found in metazoans. PAH irreversibly converts phenylalanine to tyrosine, and is known to be the rate-limiting step in phenylalanine catabolism in some systems. It is closely related to metazoan tyrosine 3-monooxygenase and tryptophan 5-monoxygenase, and more distantly to monomeric phenylalanine-4-hydroxylases of some Gram-negative bacteria. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity . However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered. A deficiency in PAH can lead to phenylketonuria (PKU), an autosomal recessive genetic disorder characterised by an inability to metabolise phenylalanine, resulting in elevated Phe levels in the bloodstream that can lead to mental retardation if left untreated . More information about these proteins can be found at Protein of the Month: Phenylalanine Hydroxylase .; GO: 0004505 phenylalanine 4-monooxygenase activity, 0006559 L-phenylalanine catabolic process.
Probab=61.91 E-value=15 Score=18.51 Aligned_cols=71 Identities=14% Similarity=0.232 Sum_probs=48.3
Q ss_pred EEEEEECCCCEEEEEECCC---CCHHHHHHHHHHHCCCCEEEEEE--ECCCCCCEEEEEEEECCCCC----HHHHHHHHC
Q ss_conf 8997657983999998287---86688999899736996322774--21478981899999478899----899999864
Q 537021.9.peg.3 15 INFDVDIGRLMICIVNADI---LGIVVFVGNILGEYGINIAHFHL--GRSQSTEHAISFLCIDGSIL----NSVLEKLSV 85 (100)
Q Consensus 15 ~~v~~~~~~~~L~i~~~D~---PG~I~~v~~~L~~~~INIa~m~l--~r~~~g~~A~~ii~vD~~i~----~~vl~~i~~ 85 (100)
..+.-......|++.=+|. -|.|+.+-.++-+++||...+.- |+..+|..==..++.|..-+ +++++.+++
T Consensus 10 ~~~~~~~~~~~l~Fslk~~sls~GaLa~~L~~F~~~dvNL~HiESRpS~~~~G~~Yef~v~~d~~~~h~~~~~~i~~l~~ 89 (445)
T TIGR01268 10 VDVNENSAKTSLIFSLKEESLSAGALAEVLKLFQEHDVNLTHIESRPSKTKPGDEYEFFVELDEKSDHDKLEDVIESLRE 89 (445)
T ss_pred CCCCCCCCCEEEEEECCHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 63001357778998414000011048999888875688457730454568899710357641247754579999999998
No 142
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=59.55 E-value=17 Score=18.28 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHHHCCCCE
Q ss_conf 8786688999899736996322774214789818999994----788998999998649882
Q 537021.9.peg.3 32 DILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKLSVNVTI 89 (100)
Q Consensus 32 D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i~~~~~v 89 (100)
-.+|+++++=.+|++|++.+.-...| .-..++++=.. |.+..++++++|+++-.|
T Consensus 13 ~~~GFLa~vF~if~~~~vsVDlisTS---EvsVS~tlD~~~~~~~~~~l~~l~~eL~~~g~V 71 (75)
T cd04912 13 GAHGFLAKVFEIFAKHGLSVDLISTS---EVSVSLTLDPTKNLSDQLLLDALVKDLSQIGDV 71 (75)
T ss_pred HHCCHHHHHHHHHHHCCCCEEEEECC---CEEEEEEECCCCCCCCHHHHHHHHHHHHHCCEE
T ss_conf 56328999999999829955899805---518999984887532066799999999955548
No 143
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.38 E-value=19 Score=17.98 Aligned_cols=55 Identities=18% Similarity=0.211 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHHHCCCCE
Q ss_conf 8786688999899736996322774214789818999994----788998999998649882
Q 537021.9.peg.3 32 DILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKLSVNVTI 89 (100)
Q Consensus 32 D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i~~~~~v 89 (100)
...|+++++=.+|++|++-+.-...| .-..++++=.. |...+++++++|+++-.|
T Consensus 13 ~~~GFLa~vF~if~~h~isVDlitTS---EvsVslTlD~~~~~~~~~l~~~ll~eL~~~~~V 71 (75)
T cd04932 13 HAQGFLAKVFGILAKHNISVDLITTS---EISVALTLDNTGSTSDQLLTQALLKELSQICDV 71 (75)
T ss_pred HHCCHHHHHHHHHHHCCCCEEEEECC---EEEEEEEECCCCCCCHHHHHHHHHHHHHHCCEE
T ss_conf 65367999999999819954899704---269999975887530366799999999960628
No 144
>pfam03927 NapD NapD protein. Uncharacterized protein involved in formation of periplasmic nitrate reductase.
Probab=55.96 E-value=19 Score=17.94 Aligned_cols=63 Identities=8% Similarity=-0.061 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHH-CCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf 878668899989973-6996322774214789818999994788998999998649882999999974
Q 537021.9.peg.3 32 DILGIVVFVGNILGE-YGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEFN 98 (100)
Q Consensus 32 D~PG~I~~v~~~L~~-~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i~~~ 98 (100)
=+|..+..+...|.. .|+-|... ...|...+++=.-+..---+.++.|+++|||.++..+--.
T Consensus 11 ~~Pe~~~~V~~~l~~~pg~Eih~~----~~~GKiVVtiE~~~~~~~~~~i~~i~~l~GVlsa~lVYh~ 74 (78)
T pfam03927 11 VRPERLAEVKAAILALPGAEIHAV----SPEGKLVVVLEGESQGAILDTIEAINALEGVLSASLVYHQ 74 (78)
T ss_pred ECHHHHHHHHHHHHCCCCCEEECC----CCCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf 687779999999974999688637----9994299999728827999999998659980489876785
No 145
>pfam06897 DUF1269 Protein of unknown function (DUF1269). This family consists of several bacterial and archaeal proteins of around 200 residues in length. The function of this family is unknown.
Probab=50.48 E-value=13 Score=18.77 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=38.1
Q ss_pred HHHHHHHHHHCCCCEEEEE-EECCCCCCEEEEEEEECCCCCHHHHHHHHCCCC
Q ss_conf 8899989973699632277-421478981899999478899899999864988
Q 537021.9.peg.3 37 VVFVGNILGEYGINIAHFH-LGRSQSTEHAISFLCIDGSILNSVLEKLSVNVT 88 (100)
Q Consensus 37 I~~v~~~L~~~~INIa~m~-l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~ 88 (100)
.|.++..|++++||=..|. ++..-.-|.+-.++-+.+..++.++++++...+
T Consensus 28 ~GAl~G~l~D~GIdD~Fik~l~~~l~pGsSALflLv~~~~~dkV~~~l~~~~g 80 (102)
T pfam06897 28 AGALSGSLSDYGIDDDFIKELGETLPPGSSALFVLVRKATPDKVLEELRSFGG 80 (102)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHCCC
T ss_conf 77776014415878799999996379986157754335878899999861598
No 146
>pfam05088 Bac_GDH Bacterial NAD-glutamate dehydrogenase. This family consists of several bacterial proteins which are closely related to NAD-glutamate dehydrogenase found in Streptomyces clavuligerus. Glutamate dehydrogenases (GDHs) are a broadly distributed group of enzymes that catalyse the reversible oxidative deamination of glutamate to ketoglutarate and ammonia.
Probab=46.47 E-value=28 Score=17.10 Aligned_cols=64 Identities=23% Similarity=0.236 Sum_probs=49.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEE-----EEECCCCC--------------CEEEEEEEECCCCCHHHHHH
Q ss_conf 983999998287866889998997369963227-----74214789--------------81899999478899899999
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHF-----HLGRSQST--------------EHAISFLCIDGSILNSVLEK 82 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m-----~l~r~~~g--------------~~A~~ii~vD~~i~~~vl~~ 82 (100)
..+.+.+.+.|.|=.+-+|...|..+|+.|..+ .+.|...| .++++.+++|...+++.+++
T Consensus 15 ~~tvi~iv~dDmPFLVDSv~~~l~~~g~~i~~~~hpvl~v~Rd~~G~l~~~~~~~~~~~~~ES~i~iei~~~~~~~~~~~ 94 (1526)
T pfam05088 15 THTVVEIVNDDMPFLVDSVTMELNRLGLTIHLLLHPVLRVRRDKDGELTEVLPADDSGGLRESLIHIEIDRLTDAEELEA 94 (1526)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHH
T ss_conf 97699996599770999999999977996589976828999989997887237788999715899999559899899999
Q ss_pred HHC
Q ss_conf 864
Q 537021.9.peg.3 83 LSV 85 (100)
Q Consensus 83 i~~ 85 (100)
|++
T Consensus 95 l~~ 97 (1526)
T pfam05088 95 LEE 97 (1526)
T ss_pred HHH
T ss_conf 999
No 147
>TIGR00580 mfd transcription-repair coupling factor; InterPro: IPR004576 All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transcribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by TcrF, which releases RNAP and the truncated transcript. The TcrF may replace RNAP at the lesion site and then recruit the UvrA/B/C repair system.; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=46.05 E-value=5.4 Score=20.86 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=49.7
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEE
Q ss_conf 7983999998287866889998997369963227742147898189999947889989999986498829
Q 537021.9.peg.3 21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIR 90 (100)
Q Consensus 21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~ 90 (100)
|.-+||++.+-|+-| +|+.=++=|. +||.++.++||..+.-+..+++...++|+.+....
T Consensus 790 PnANTiIi~~AD~FG-LaQLYQLRGR---------VGRs~~~AYAYlL~~~~~~Lt~~A~~RL~ai~~f~ 849 (997)
T TIGR00580 790 PNANTIIIDRADKFG-LAQLYQLRGR---------VGRSKKKAYAYLLYPHQKALTEDALKRLEAIQEFS 849 (997)
T ss_pred HHHHHHHHHHHCCCC-HHHHHHCCCE---------ECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 001268687521147-0347453631---------20587126898334774001458999999997301
No 148
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=42.12 E-value=15 Score=18.48 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 28786688999899736996322774
Q 537021.9.peg.3 31 ADILGIVVFVGNILGEYGINIAHFHL 56 (100)
Q Consensus 31 ~D~PG~I~~v~~~L~~~~INIa~m~l 56 (100)
=|.+|++++|.+-|++.+|-|=....
T Consensus 74 FgltGilasV~~pLsd~gigIFavSt 99 (128)
T COG3603 74 FGLTGILASVSQPLSDNGIGIFAVST 99 (128)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 78304146654457657952799971
No 149
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.47 E-value=33 Score=16.67 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=43.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCC-C---HHHHHHHHCC
Q ss_conf 999998287866889998997369963227742147898189999947889-9---8999998649
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI-L---NSVLEKLSVN 86 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i-~---~~vl~~i~~~ 86 (100)
++-+.-..+||...+....|+.. ||..++- |.+.+..|..++.+.-+- + +++++.+++.
T Consensus 3 llav~iPErpGsf~~f~~~lg~r--~ITEF~Y-R~~~~~~A~V~vGi~~~~~~~e~~~l~~~L~~~ 65 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIGPR--NITEFNY-RYADEKDAHIFVGVSVANGAEELAELLEDLKSA 65 (85)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--CCEEEEE-ECCCCCCEEEEEEEEECCCHHHHHHHHHHHHHC
T ss_conf 79995699986999999985877--4103577-437876379999987279578999999999987
No 150
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=38.70 E-value=23 Score=17.52 Aligned_cols=32 Identities=16% Similarity=-0.003 Sum_probs=15.3
Q ss_pred EEEEEEEECCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf 18999994788998999998649882999999
Q 537021.9.peg.3 64 HAISFLCIDGSILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 64 ~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i 95 (100)
.+++-.+.|++..+.+.++|++.|||.+++++
T Consensus 62 ~vyL~~~~~~~~~~~v~~~i~~~~gV~~v~~~ 93 (297)
T COG2177 62 TVYLQIDADQDDAALVREKIEGIPGVKSVRFI 93 (297)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 99973687868899999998468996447876
No 151
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.32 E-value=38 Score=16.40 Aligned_cols=60 Identities=20% Similarity=0.196 Sum_probs=38.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEE--EEECCCCCHHHHHHHHCC
Q ss_conf 99999828786688999899736996322774214789818999--994788998999998649
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISF--LCIDGSILNSVLEKLSVN 86 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~i--i~vD~~i~~~vl~~i~~~ 86 (100)
...+.-..+||.+-+....|+. ..||..++- |.+....|-.+ +++...-.+++.+.++++
T Consensus 3 ~f~v~fPErpGaL~~Fl~~l~~-~~nIT~F~Y-R~~g~~~a~vlvGi~~~~~e~~~l~~~l~~~ 64 (81)
T cd04907 3 LFRFEFPERPGALKKFLNELLP-KWNITLFHY-RNQGSDYGRVLVGIQVPDADLDELKERLDAL 64 (81)
T ss_pred EEEEECCCCCCHHHHHHHHHCC-CCCEEEEEE-EECCCCCCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf 8999678998789999998389-775778999-7069874328999970888899999999986
No 152
>PRK01002 nickel responsive regulator; Provisional
Probab=38.10 E-value=38 Score=16.38 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=55.2
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCE-EEEEEECCCCCCEEEEEEEECCCCC--HHHHHHHHCCCCEEEEEEEEE
Q ss_conf 83999998287866889998997369963-2277421478981899999478899--899999864988299999997
Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINI-AHFHLGRSQSTEHAISFLCIDGSIL--NSVLEKLSVNVTIRFVKQFEF 97 (100)
Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INI-a~m~l~r~~~g~~A~~ii~vD~~i~--~~vl~~i~~~~~v~~vr~i~~ 97 (100)
|...++.+..+.++.-+++.+--++.-.| +++++--. ...-+-++-+.++.. .++.++|.+++||..+++.-.
T Consensus 58 G~i~vvYdH~~~~l~~~L~~iqH~~~~~I~ss~Hvhld--~~~ClEvivv~G~~~~i~~l~~~l~~~kGV~~~kL~~~ 133 (141)
T PRK01002 58 GTISIIYDHHYTDVMEKLTDIQHDYRKLIVATIHMHMD--HDHCMEVVLVKGDASEIRELTDKLTSLKGVKQVKLTVM 133 (141)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEECC--CCCEEEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf 99999996786519999999977330609888877517--88608999997378999999999854489118999996
No 153
>PRK02264 N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase; Provisional
Probab=37.42 E-value=39 Score=16.32 Aligned_cols=63 Identities=17% Similarity=0.248 Sum_probs=42.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEE-E--------EC-----------CCCCCEEEEEEEECCCCCHHHHHHHHC
Q ss_conf 999982878668899989973699632277-4--------21-----------478981899999478899899999864
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFH-L--------GR-----------SQSTEHAISFLCIDGSILNSVLEKLSV 85 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~-l--------~r-----------~~~g~~A~~ii~vD~~i~~~vl~~i~~ 85 (100)
.+-.+.|.| +|+-.++--+.+.+....+. + .+ ..+...|+.++|.|+.+|+++.++|.+
T Consensus 77 ~v~V~td~P-viAcLgSQyAGW~l~~~~ffamGSGPaRAla~k~e~lf~~i~Y~D~~~~avl~lE~~~lP~~~v~~~iA~ 155 (318)
T PRK02264 77 FVEVSTDHP-AIACLGSQKAGWSLSVGDFFALGSGPARALALKPEELYEEIGYRDDADVAVLVLESDKLPDEEVAEKIAE 155 (318)
T ss_pred EEEEEECCH-HHHHHHCCCCCCEECCCCEEEECCCHHHHHHCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 499971856-9998723434845134888563575777750584878987287136770799997588999999999999
Q ss_pred CCCE
Q ss_conf 9882
Q 537021.9.peg.3 86 NVTI 89 (100)
Q Consensus 86 ~~~v 89 (100)
--+|
T Consensus 156 ~cgv 159 (318)
T PRK02264 156 ECGV 159 (318)
T ss_pred HCCC
T ss_conf 8199
No 154
>pfam00585 Thr_dehydrat_C C-terminal regulatory domain of Threonine dehydratase. Threonine dehydratases pfam00291 all contain a carboxy terminal region. This region may have a regulatory role. Some members contain two copies of this region. This family is homologous to the pfam01842 domain.
Probab=36.99 E-value=40 Score=16.28 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=43.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE--CCCCC-HHHHHHHHCC
Q ss_conf 8399999828786688999899736996322774214789818999994--78899-8999998649
Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI--DGSIL-NSVLEKLSVN 86 (100)
Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v--D~~i~-~~vl~~i~~~ 86 (100)
.+.+.+.-..+||.+.+.-+.|+.. .||..++- |.+....|..++.+ +..-. +++++.+++.
T Consensus 10 E~~~~v~iPErpGal~~Fl~~l~~~-~~ITeF~Y-R~~~~~~a~VlvGi~~~~~~e~~~l~~~L~~~ 74 (91)
T pfam00585 10 EALFAVEFPERPGALLKFLDLLGGR-NNITLFHY-RKHGAKNGSILVGVQLSQASDLDEFIERLEKL 74 (91)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCC-CCEEEEEE-ECCCCCCEEEEEEEEECCHHHHHHHHHHHHHC
T ss_conf 5899998888874999999982995-55558998-54589703599999979888999999999975
No 155
>TIGR03120 one_C_mch methenyltetrahydromethanopterin cyclohydrolase. Members of this protein family are the enzyme methenyltetrahydromethanopterin cyclohydrolase, a key enzyme for tetrahydromethanopterin (H4MPT)-linked C1 transfer metabolism.
Probab=36.54 E-value=40 Score=16.24 Aligned_cols=63 Identities=14% Similarity=0.221 Sum_probs=42.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEE---------EEC-----------CCCCCEEEEEEEECCCCCHHHHHHHHC
Q ss_conf 999982878668899989973699632277---------421-----------478981899999478899899999864
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFH---------LGR-----------SQSTEHAISFLCIDGSILNSVLEKLSV 85 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~---------l~r-----------~~~g~~A~~ii~vD~~i~~~vl~~i~~ 85 (100)
.+-.+.|.| +|+-.++--+.+.+....+. +.+ ..+...|+.++|.|+.+|+++.++|.+
T Consensus 75 ~v~V~td~P-viAcLgSQyAGW~l~~~~f~alGSGPaRAla~k~e~lf~~l~Y~d~~~~avl~lE~~~lP~~~v~~~iA~ 153 (312)
T TIGR03120 75 AVQVTTDHP-VIACLGSQKAGWQVKVGKYFAMGSGPARALALKPKETYEEIGYEDDSDVAVIVLESDKLPDEEVAEYIAD 153 (312)
T ss_pred EEEEEECCH-HHHHHHCCCCCCEECCCCEEEECCCHHHHHHCCCHHHHHHCCCEECCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 499970857-9998723434846334877663574777752384778987197106780899997588999999999999
Q ss_pred CCCE
Q ss_conf 9882
Q 537021.9.peg.3 86 NVTI 89 (100)
Q Consensus 86 ~~~v 89 (100)
--+|
T Consensus 154 ~cgv 157 (312)
T TIGR03120 154 ECGV 157 (312)
T ss_pred HCCC
T ss_conf 8199
No 156
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=34.78 E-value=43 Score=16.08 Aligned_cols=64 Identities=9% Similarity=0.031 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEE-CCCCCCEEEEEEEE-CCCCCHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf 287866889998997369963227742-14789818999994-788998999998649882999999974
Q 537021.9.peg.3 31 ADILGIVVFVGNILGEYGINIAHFHLG-RSQSTEHAISFLCI-DGSILNSVLEKLSVNVTIRFVKQFEFN 98 (100)
Q Consensus 31 ~D~PG~I~~v~~~L~~~~INIa~m~l~-r~~~g~~A~~ii~v-D~~i~~~vl~~i~~~~~v~~vr~i~~~ 98 (100)
.=+|..++.|...|.. +....+. .+...|.-+.+++. ++..--+.+++|+++|||.++.++-=.
T Consensus 13 qa~Pe~~~~V~~~i~a----lpg~EIh~~d~~~GKlVVvlE~~~~~~l~~~i~~I~~l~GVlsasLVYHq 78 (87)
T PRK10553 13 QAKSERISDISTQLNA----FPGCEVAVSDAPSGQLIVVVEAEDSETLLQTIESVRNVEGVLAVSLVYHQ 78 (87)
T ss_pred EECHHHHHHHHHHHHH----CCCCEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf 9476889999999970----89978713568897299999508877999999988558972689866764
No 157
>cd00545 MCH Methenyltetrahydromethanopterin (methenyl-H4MPT) cyclohydrolase (MCH). MCH is a cytoplasmic enzyme that has been identified in methanogenic archaea, sulfate- reducing archaea, and methylotrophic bacteria. It catalyzes the reversible formation of N(5), N(10)-methenyltetrahydromethanopterin (methenyl-H4MPT+) from N(5)-formyltetrahydromethanopterin (formyl- H4MPT), in the third step of the reaction to reduce CO2 to CH4. The protein functions as a homodimer or homotrimer, depending on the organism.
Probab=34.48 E-value=44 Score=16.06 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=42.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEE---------EEC-----------CCCCCEEEEEEEECCCCCHHHHHHH
Q ss_conf 39999982878668899989973699632277---------421-----------4789818999994788998999998
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFH---------LGR-----------SQSTEHAISFLCIDGSILNSVLEKL 83 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~---------l~r-----------~~~g~~A~~ii~vD~~i~~~vl~~i 83 (100)
+.-+-.+.|.| +|+-.++--+.+.+....+. +.+ ..+...|+.++|.|+.+|+++.++|
T Consensus 73 ~~~v~V~td~P-viACLgSQyAGW~l~~~~f~a~GSGPaRALa~k~e~lf~~i~Y~D~~~~avl~lE~~~lP~~~v~~~i 151 (312)
T cd00545 73 PPTVEVHTDNP-VIACLGSQYAGWSLSVGDFFALGSGPARALALKPEELYEEIGYRDDAEVAVLVLESDKLPPEEVAEKV 151 (312)
T ss_pred CCEEEEEECCH-HHHHHHCCCCCCEECCCCEEEECCCHHHHHHCCCHHHHHHCCCEECCCCEEEEEECCCCCCHHHHHHH
T ss_conf 75599972856-99987234348461358886635756676514838789870871057817999975889999999999
Q ss_pred HCCCCE
Q ss_conf 649882
Q 537021.9.peg.3 84 SVNVTI 89 (100)
Q Consensus 84 ~~~~~v 89 (100)
.+--+|
T Consensus 152 A~~cgv 157 (312)
T cd00545 152 AAECGV 157 (312)
T ss_pred HHHCCC
T ss_conf 998199
No 158
>pfam02289 MCH Cyclohydrolase (MCH). Methenyl tetrahydromethanopterin cyclohydrolase EC:3.5.4.27 is involved in methanogenesis in bacteria and archaea, producing methane from carbon monoxide or carbon dioxide.
Probab=32.63 E-value=47 Score=15.89 Aligned_cols=66 Identities=17% Similarity=0.262 Sum_probs=42.7
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEE-EE-------------------CCCCCCEEEEEEEECCCCCHHHHHH
Q ss_conf 839999982878668899989973699632277-42-------------------1478981899999478899899999
Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFH-LG-------------------RSQSTEHAISFLCIDGSILNSVLEK 82 (100)
Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~-l~-------------------r~~~g~~A~~ii~vD~~i~~~vl~~ 82 (100)
.+.-+-.+.|.| +|+-.++--+.+.+....+. ++ -..+...|+.++|.|+.+|+++.++
T Consensus 72 ~~~~v~V~td~P-viAcLgSQyAGW~l~~~~ffamGSGPaRALa~k~e~lf~~i~Y~D~~~~avl~lE~~~lP~~~v~~~ 150 (312)
T pfam02289 72 WLPAVQVKTDHP-AIACLGSQKAGWSVSVGDYFAMGSGPARALALKPKETYEEIGYEDDADVAVLVLESDKLPDEKVVEK 150 (312)
T ss_pred CCCEEEEEECCH-HHHHHHCCCCCCEECCCCEEEECCCHHHHHCCCCHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 774499972857-9998713434846325877462574777750485878987187115781799997588999999999
Q ss_pred HHCCCCE
Q ss_conf 8649882
Q 537021.9.peg.3 83 LSVNVTI 89 (100)
Q Consensus 83 i~~~~~v 89 (100)
|.+--+|
T Consensus 151 iA~~cgv 157 (312)
T pfam02289 151 VAKECGV 157 (312)
T ss_pred HHHHCCC
T ss_conf 9998199
No 159
>PRK08818 prephenate dehydrogenase; Provisional
Probab=31.23 E-value=50 Score=15.76 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=39.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99999828786688999899736996322774214789818999994788998999
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVL 80 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl 80 (100)
.=+..-.|+||-+-.+-.++-.|++|.++.+.+|...|+ --.-+..|---+...+
T Consensus 298 ~sv~~P~D~~~S~r~ll~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 352 (373)
T PRK08818 298 LSVYLPEDQPGSLRRLLHVFEQHGVNLSSIHSSRTPGGE-LHFRIGFEPGSDRAAL 352 (373)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCE-EEEEEECCCCCCHHHH
T ss_conf 768788988734999999999845624541046788853-6899823778877888
No 160
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase; InterPro: IPR005963 Tryptophan 5-monooxygenase (1.14.16.4 from EC) is a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria. It is the rate-limiting enzyme in the biosynthesis of serotonin in the central nervous system and catalyzes the first step of the synthesis of melatonin in the pineal gland . L-tryptophan + tetrahydropteridine + O2 = 5-hydroxy-L-tryptophan + dihydropteridine + H2O ; GO: 0004510 tryptophan 5-monooxygenase activity, 0042427 serotonin biosynthetic process.
Probab=31.14 E-value=50 Score=15.75 Aligned_cols=74 Identities=23% Similarity=0.225 Sum_probs=54.1
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEC----CCCCC-E-------EEEEEEECCCCCHHHHHHHHC-CCC
Q ss_conf 9839999982878668899989973699632277421----47898-1-------899999478899899999864-988
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGR----SQSTE-H-------AISFLCIDGSILNSVLEKLSV-NVT 88 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r----~~~g~-~-------A~~ii~vD~~i~~~vl~~i~~-~~~ 88 (100)
+--+|++.-.+.-|=|.++-++|-+.+|||-.+..+. .+++. . .+.-++++..--+++++.|+. .-.
T Consensus 44 ~~~tiI~~l~~~~~dl~~~l~~f~d~~~nilHlE~r~Grln~~~~~~~sefe~~dvLv~ve~~~~~~~~~~~~L~~n~~~ 123 (499)
T TIGR01270 44 QRLTIIFSLKNEVGDLSKALKIFQDKHINILHLESRKGRLNSKKATSKSEFETLDVLVDVEVDREELEEVLELLKSNELD 123 (499)
T ss_pred EEEEEEEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf 07999987400143599999852678845888634654033431344000242024675157656799999997405744
Q ss_pred EEEEEEE
Q ss_conf 2999999
Q 537021.9.peg.3 89 IRFVKQF 95 (100)
Q Consensus 89 v~~vr~i 95 (100)
++.|...
T Consensus 124 ~~~v~~~ 130 (499)
T TIGR01270 124 VLEVTSP 130 (499)
T ss_pred EEEECCC
T ss_conf 5774176
No 161
>KOG2797 consensus
Probab=30.94 E-value=50 Score=15.73 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=30.4
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 983999998287866889998997369963227742
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLG 57 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~ 57 (100)
-...|++.+++-||++-++-++|+-+.||+-.....
T Consensus 280 ~ktsivf~~~~gp~vLfkvl~vfa~r~inltkIesR 315 (377)
T KOG2797 280 FKTSIVFFREKGPGVLFKVLSVFAFRSINLTKIESR 315 (377)
T ss_pred CEEEEEEEEECCCCHHHHHHHHHHHHHCEEEEEECC
T ss_conf 145688886169823999999987631014433225
No 162
>PRK05925 aspartate kinase; Provisional
Probab=29.32 E-value=54 Score=15.58 Aligned_cols=44 Identities=18% Similarity=0.068 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHH
Q ss_conf 6688999899736996322774214789818999994788998999998
Q 537021.9.peg.3 35 GIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKL 83 (100)
Q Consensus 35 G~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i 83 (100)
+-++++-.+|+++++++.-+..+ .....+++ -+....++.++.+
T Consensus 313 ~~~~~vf~~l~~~~i~~~~i~s~---~~~vs~ti--~~~~~~~~~~~~l 356 (440)
T PRK05925 313 VRLEKVLGILRSLGIVPGLVMAQ---NSGVYFTT--DDDDISEEYIQHL 356 (440)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEC---CCEEEEEE--CHHHHHHHHHHHH
T ss_conf 66999999999759933899724---75399997--7036569999999
No 163
>TIGR02282 MltB lytic murein transglycosylase B; InterPro: IPR011757 This family consists of lytic murein transglycosylases (murein hydrolases) related to MltB (P41052 from SWISSPROT), which is a 38 kDa membrane-bound lipoprotein in Escherichia coli. The N-terminal region of this protein contains a lipoprotein-processing site which is conserved in about half the members of this family. Proteolytic cleavage of MltB produces a fully-active, soluble form of this enzyme known as Slt35 (for soluble lytic transglycosylase). This enzyme catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan. Its physiological role is unknown as deletion of the gene shows no obvious phenotype , though it has been suggested to play a role in recycling of muropeptides during cell elongation and/or cell division. The Slt35 enzyme is a monomer with an ellipsoid shape and is composed of three distinct domains known as the alpha, beta and core domains , . The alpha domain contains mainly alpha-helices, while the beta domain consists of a five-stranded antiparallel beta-sheet flanked by a short alpha-helix. The core domain is sandwiched between the alpha and beta domains and its fold is similar to that of lysozyme, but contains a single metal ion binding site in a helix-loop-helix module that is similar to the eukaryotic EF-hand calcium-binding fold, though in this case the loop is slightly longer than usual. Binding of Ca(2+) to this EF hand motif has been shown to be important for thermal stability of the protein . The substrate binding sites are found in the cleft formed by the core domain of the enzyme . Members of this family do not contain the putative peptidoglycan binding domain described by IPR002477 from INTERPRO, which is associated with several other classes of bacterial cell wall lytic enzymes..
Probab=28.25 E-value=9.4 Score=19.57 Aligned_cols=72 Identities=15% Similarity=0.056 Sum_probs=45.3
Q ss_pred EECCEEEEEECCCCEEEE-EECCCCCHHHHHHHHHHHCC-CC----EEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf 979989976579839999-98287866889998997369-96----3227742147898189999947889989999986
Q 537021.9.peg.3 11 KIQEINFDVDIGRLMICI-VNADILGIVVFVGNILGEYG-IN----IAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS 84 (100)
Q Consensus 11 ~i~g~~v~~~~~~~~L~i-~~~D~PG~I~~v~~~L~~~~-IN----Ia~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~ 84 (100)
.+-.|.||+..+||+=|+ .+.|. ||+|+..|-.|| +- |+.+...+....+.....-.-.++.|.--+..|+
T Consensus 184 SYR~YAVDfD~dG~iDL~ns~~DA---IgSvANyl~~HGGW~~~~~V~~~~~~~~d~~~d~~~~~~~~g~~p~~~~~~L~ 260 (323)
T TIGR02282 184 SYRQYAVDFDGDGHIDLFNSVDDA---IGSVANYLQAHGGWQRNDPVAVPAALAADAQGDKLLAKKFAGEKPHYSLSDLK 260 (323)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCE---EEECHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCCEEHHHHH
T ss_conf 568761153578741488788763---77115653106733048814887105888743410213214787603078886
Q ss_pred C
Q ss_conf 4
Q 537021.9.peg.3 85 V 85 (100)
Q Consensus 85 ~ 85 (100)
+
T Consensus 261 ~ 261 (323)
T TIGR02282 261 A 261 (323)
T ss_pred H
T ss_conf 2
No 164
>KOG1250 consensus
Probab=27.69 E-value=58 Score=15.42 Aligned_cols=61 Identities=11% Similarity=0.070 Sum_probs=44.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEC-CCCCHHHHHHHHC
Q ss_conf 999998287866889998997369963227742147898189999947-8899899999864
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCID-GSILNSVLEKLSV 85 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD-~~i~~~vl~~i~~ 85 (100)
.+...-.|+||.+.++..+++..++++-+....|..-...-.....++ ..--++..++|++
T Consensus 375 ~l~v~l~d~pG~~~~l~~~i~~~~~se~~~~~~~~~~~~v~t~~v~~~~e~~~~~~~~ql~~ 436 (457)
T KOG1250 375 RLLVALPDRPGGFNKLTELIGPLSVSEKDIRHERAWMRNVYTSFVKVVRETEGKEHEQQLKQ 436 (457)
T ss_pred EEEEECCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHHHHH
T ss_conf 66541466788503457763446655455340477753114789999873122999999997
No 165
>PRK08744 consensus
Probab=26.69 E-value=60 Score=15.32 Aligned_cols=71 Identities=15% Similarity=0.135 Sum_probs=45.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCC--CCEEEEEE-ECCCCCCEEEEEEEECC----CCCHHHHHHHHCCCCEEEEEEE
Q ss_conf 3999998287866889998997369--96322774-21478981899999478----8998999998649882999999
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYG--INIAHFHL-GRSQSTEHAISFLCIDG----SILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~--INIa~m~l-~r~~~g~~A~~ii~vD~----~i~~~vl~~i~~~~~v~~vr~i 95 (100)
.+.+-.....+..+.++..+|..+. --=....+ .+...+ .+-..+.++. .++++++..|++++|+..|+..
T Consensus 1112 ~l~~~~~~~~~~~~~~l~~~l~~~~~g~~~v~~~~~~~~~~~-~~~~~l~l~~~~~v~~~~~l~~~l~~~~g~~~v~~~ 1189 (1195)
T PRK08744 1112 RLSLRLDLREKQAWSRIDALLAKHRPGKTPLRLDLLLRSPSG-GVAGMLDLNGSHSVRIDQQLMDSLRADPAVRTLKVK 1189 (1195)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC-CEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEE
T ss_conf 159998556715899999999833899986489999962788-757999738857537899999999853285528998
No 166
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.66 E-value=60 Score=15.31 Aligned_cols=57 Identities=23% Similarity=0.294 Sum_probs=38.0
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEE--EEECCC-CCHHHHHHHHCC
Q ss_conf 99828786688999899736996322774214789818999--994788-998999998649
Q 537021.9.peg.3 28 IVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISF--LCIDGS-ILNSVLEKLSVN 86 (100)
Q Consensus 28 i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~i--i~vD~~-i~~~vl~~i~~~ 86 (100)
+.-..+||.+.+....|+. ..||..++- |.+....|-.. +++... =-+++++.|++.
T Consensus 3 v~iPErpGal~~F~~~l~~-~~~ITeF~Y-R~~~~~~a~vlvGi~~~~~~d~~~l~~~L~~~ 62 (68)
T cd04885 3 VTFPERPGALKKFLELLGP-PRNITEFHY-RNQGGDEARVLVGIQVPDREDLAELKERLEAL 62 (68)
T ss_pred EECCCCCCHHHHHHHHHCC-CCCEEEEEE-EECCCCEEEEEEEEEECCHHHHHHHHHHHHHC
T ss_conf 8557897699999998499-874358999-70698606799999959888899999999983
No 167
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=25.18 E-value=51 Score=15.70 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCC
Q ss_conf 668899989973699632277421478981899999478899899999864988
Q 537021.9.peg.3 35 GIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVT 88 (100)
Q Consensus 35 G~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~ 88 (100)
..=-++=..||+++|.|.-.+++ ..+.++++-+-+.+-..++|+++.--|.
T Consensus 14 ~lq~~vF~~lA~~~ISvDfINI~---P~~~vfTV~~~~~~ka~~iL~~lg~~p~ 64 (67)
T cd04914 14 DLQQRVFKALANAGISVDLINVS---PEEVIFTVDGEVAEKAVDILEKMGLDPS 64 (67)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEC---CCCEEEEECHHHHHHHHHHHHHCCCCCE
T ss_conf 59999999999759857899866---7747998077889999999998699837
No 168
>PRK11679 lipoprotein; Provisional
Probab=23.59 E-value=69 Score=14.99 Aligned_cols=46 Identities=13% Similarity=0.000 Sum_probs=38.0
Q ss_pred EEECCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9979989976579839999982878668899989973699632277
Q 537021.9.peg.3 10 IKIQEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFH 55 (100)
Q Consensus 10 v~i~g~~v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~ 55 (100)
--++|-+++..++..++++.+.+-.-+-..|..+|.+.||-|+.-.
T Consensus 90 ~l~~gsr~e~~g~~~~~lv~~~~~~~LW~~v~~~l~e~~i~i~~~d 135 (345)
T PRK11679 90 ALISGARTQFNGDTATLLLENGENDTLWPQVVSVLQAKNYPIAKRD 135 (345)
T ss_pred CCCCCCEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 5478836873797179998378678899999999997397368774
No 169
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=23.55 E-value=70 Score=14.99 Aligned_cols=54 Identities=11% Similarity=0.059 Sum_probs=33.8
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCC
Q ss_conf 8287866889998997369963227742147898189999947889989999986498
Q 537021.9.peg.3 30 NADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNV 87 (100)
Q Consensus 30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~ 87 (100)
..+.||+.+++-+.|++++||+--...+ +. +. ...+.+..+..+.+++.+++..
T Consensus 327 m~~~~g~~~riF~~L~~~~I~vi~isq~--ss-e~-si~~~~~~~~~~~a~~~l~~~~ 380 (810)
T PRK09466 327 SQDFELAQKELDQLLKRAQLRPLAVGVH--AD-RR-LLQLAYTSEVADSALKLLDDAA 380 (810)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEEEC--CC-CC-EEEEEEEHHHHHHHHHHHHHCC
T ss_conf 7883058999999999769708887860--67-86-5999986889999999998604
No 170
>PRK05406 LamB/YcsF family protein; Provisional
Probab=22.71 E-value=72 Score=14.90 Aligned_cols=40 Identities=28% Similarity=0.345 Sum_probs=24.9
Q ss_pred EEEEEECCEEEEEECCCCEEEEEECCCCCHHHHHH---HHHHHCCC
Q ss_conf 78999799899765798399999828786688999---89973699
Q 537021.9.peg.3 7 PRFIKIQEINFDVDIGRLMICIVNADILGIVVFVG---NILGEYGI 49 (100)
Q Consensus 7 ~riv~i~g~~v~~~~~~~~L~i~~~D~PG~I~~v~---~~L~~~~I 49 (100)
-++..++|-.+.+..+ +|++ |-|.||.+..+. +.|.++||
T Consensus 204 g~V~ti~G~~i~i~ad--TICv-HgDtp~Av~iak~ir~~L~~~gI 246 (246)
T PRK05406 204 GRVTAIDGEWIPVEAD--TICV-HGDGPHAVAFARRIRAALEAAGI 246 (246)
T ss_pred CCEEECCCCEEECCCC--EEEE-CCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 9689238988760489--8998-99997899999999999997769
No 171
>COG4803 Predicted membrane protein [Function unknown]
Probab=22.21 E-value=48 Score=15.83 Aligned_cols=56 Identities=21% Similarity=0.168 Sum_probs=39.2
Q ss_pred HHHHHHHHHHCCCCEEEEE-EECC-CCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEE
Q ss_conf 8899989973699632277-4214-7898189999947889989999986498829999
Q 537021.9.peg.3 37 VVFVGNILGEYGINIAHFH-LGRS-QSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVK 93 (100)
Q Consensus 37 I~~v~~~L~~~~INIa~m~-l~r~-~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr 93 (100)
.|.++..|++.|||=..|. +++. ..|+.|+- +=+-+-.++.++++++...+..--.
T Consensus 89 ~GAl~g~l~DvGIdDdFik~l~~ti~pG~sALF-vLi~k~t~DKVl~~~~g~~g~vlrT 146 (170)
T COG4803 89 SGALSGSLTDVGIDDDFIKELGETIQPGSSALF-VLISKMTEDKVLADLSGFGGTVLRT 146 (170)
T ss_pred HHHHCCCEEECCCCHHHHHHHHHHCCCCCEEEE-EEEECCCHHHHHHHHHCCCCEEEEC
T ss_conf 512034200037677899999841699974799-8742256677999864458789871
No 172
>cd00292 EF1B Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain. EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl tRNA to the ribosome. The guanine nucleotide exchange domain of EF1B, which is the alpha subunit in yeast, is responsible for the catalysis of this exchange reaction.
Probab=22.07 E-value=75 Score=14.82 Aligned_cols=61 Identities=20% Similarity=0.135 Sum_probs=37.3
Q ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEE--ECC-CCCHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf 8899989973699632277421478981899999--478-8998999998649882999999974
Q 537021.9.peg.3 37 VVFVGNILGEYGINIAHFHLGRSQSTEHAISFLC--IDG-SILNSVLEKLSVNVTIRFVKQFEFN 98 (100)
Q Consensus 37 I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~--vD~-~i~~~vl~~i~~~~~v~~vr~i~~~ 98 (100)
-..|-.++- .|..+..+..---.-|=.++.+.. -|. --++++-++|.+.++|.++-...|+
T Consensus 23 ~~~Ik~i~~-~gl~~~~~k~ePiafGLk~L~i~~vveD~~g~~D~lee~i~~~d~Vqsvei~~~~ 86 (88)
T cd00292 23 EEKIRAILM-DGLLWGKSKLEPIAFGLKALQIYCVVEDDEGGTDELEEAISEEDGVQSVDVEAFN 86 (88)
T ss_pred HHHHHHHCC-CCCEEEEEEEEEEEEEEEEEEEEEEEEECCCCHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf 999997576-8858989999984216579999999980873779999998466994189999987
No 173
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=21.41 E-value=77 Score=14.75 Aligned_cols=46 Identities=24% Similarity=0.411 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHH
Q ss_conf 8786688999899736996322774214789818999994788998999998
Q 537021.9.peg.3 32 DILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKL 83 (100)
Q Consensus 32 D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i 83 (100)
...|...++-++|.++++.+..+..+- ..++ +-+|.+..++.++++
T Consensus 12 ~~~GF~~~v~~il~~~~isv~~i~t~~-----~svs-~~l~~~~~~~~l~~l 57 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPTSE-----NSVT-LYLDDSLLPKKLKRL 57 (62)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCC-----CEEE-EEECCCCCHHHHHHH
T ss_conf 326558999999998199879870664-----3799-998210120579999
No 174
>pfam11110 Phage_hub_GP28 Baseplate hub distal subunit. These baseplate proteins are also referred to as Gp28. Gp28 is the structural component of the central part of the bacteriophage T4 baseplate, which possesses a hydrophobic region and is membrane bound. Gp28 forms a complex with gp27 which is another structural component of the baseplate.
Probab=20.81 E-value=80 Score=14.68 Aligned_cols=45 Identities=9% Similarity=0.032 Sum_probs=36.8
Q ss_pred CCCCEEEEEEECCE-----------EEEEECCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 55873789997998-----------9976579839999982878668899989973
Q 537021.9.peg.3 2 FSDGKPRFIKIQEI-----------NFDVDIGRLMICIVNADILGIVVFVGNILGE 46 (100)
Q Consensus 2 fg~g~~riv~i~g~-----------~v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~ 46 (100)
|.|.-....++||| +.||...|++..++..-.---...+..+|+.
T Consensus 48 FN~klkt~~~~dG~t~~lddvYic~~~EFq~~Gktf~Fk~p~~~d~f~~~~d~Ls~ 103 (151)
T pfam11110 48 FNGKLKTVQEKDGFTYDLDDVYICQRTEFQFQGKTFYFKPPMKTDTFVSKSDILSK 103 (151)
T ss_pred HCCCCCEEEEECCEEEECCCEEEEEEEEEEECCEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 64836716853686776370789888899975808985497643554528999998
Done!