Query         537021.9.peg.33_1
Match_columns 100
No_of_seqs    109 out of 961
Neff          6.6 
Searched_HMMs 39220
Date          Sun May 22 16:43:10 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_33.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK13581 D-3-phosphoglycerate  100.0 1.9E-34   5E-39  202.4  12.3   97    1-97    428-524 (524)
  2 cd04903 ACT_LSD C-terminal ACT  99.9 3.7E-24 9.4E-29  148.3   8.7   71   25-95      1-71  (71)
  3 cd04902 ACT_3PGDH-xct C-termin  99.9 6.5E-24 1.7E-28  147.0   7.6   73   25-97      1-73  (73)
  4 cd04879 ACT_3PGDH-like ACT_3PG  99.9   3E-22 7.6E-27  138.2   7.5   71   25-95      1-71  (71)
  5 cd04901 ACT_3PGDH C-terminal A  99.8 6.6E-20 1.7E-24  125.8   7.5   69   25-95      1-69  (69)
  6 PRK11790 D-3-phosphoglycerate   99.8 2.2E-18 5.5E-23  117.8   7.9   91    3-95    318-408 (409)
  7 TIGR01327 PGDH D-3-phosphoglyc  99.7 6.9E-18 1.8E-22  115.2   9.4   97    1-97    438-535 (535)
  8 TIGR00719 sda_beta L-serine de  99.7 2.2E-16 5.6E-21  107.3   6.7   82    2-83    127-208 (208)
  9 LOAD_ACT consensus              98.9 5.4E-09 1.4E-13   68.3   7.3   71   25-95      1-74  (76)
 10 cd04883 ACT_AcuB C-terminal AC  98.6 4.8E-07 1.2E-11   58.0   8.5   63   24-86      2-64  (72)
 11 PRK08577 hypothetical protein;  98.5   1E-06 2.7E-11   56.2   8.3   75   24-98     57-135 (135)
 12 pfam01842 ACT ACT domain. This  98.5 7.6E-07 1.9E-11   57.0   7.4   65   24-88      1-66  (66)
 13 cd04874 ACT_Af1403 N-terminal   98.4 2.3E-06 5.8E-11   54.5   9.6   68   26-94      3-71  (72)
 14 cd04878 ACT_AHAS N-terminal AC  98.4 1.8E-06 4.5E-11   55.0   8.5   70   24-93      1-72  (72)
 15 cd04882 ACT_Bt0572_2 C-termina  98.4 1.7E-06 4.4E-11   55.1   7.8   58   26-85      2-59  (65)
 16 cd04876 ACT_RelA-SpoT ACT  dom  98.4 1.6E-06   4E-11   55.3   7.4   65   28-93      3-70  (71)
 17 PRK06737 acetolactate synthase  98.3 4.9E-06 1.2E-10   52.7   8.3   72   23-94      2-75  (76)
 18 COG1760 SdaA L-serine deaminas  98.3 1.2E-09   3E-14   71.8 -10.8   93    3-97    161-254 (262)
 19 CHL00100 ilvH acetohydroxyacid  98.2 7.7E-06   2E-10   51.7   8.4   74   23-96      2-77  (172)
 20 PRK10872 relA GDP/GTP pyrophos  98.2 5.7E-06 1.4E-10   52.4   7.6   72   25-96    668-742 (743)
 21 PRK08178 acetolactate synthase  98.2 1.7E-05 4.3E-10   49.9   9.2   76   21-96      6-82  (96)
 22 PRK11895 ilvH acetolactate syn  98.2 1.3E-05 3.4E-10   50.4   8.4   74   23-96      2-77  (161)
 23 COG2150 Predicted regulator of  98.2 1.1E-05 2.9E-10   50.8   7.9   68   26-93     98-165 (167)
 24 cd04881 ACT_HSDH-Hom ACT_HSDH_  98.2 8.2E-06 2.1E-10   51.5   7.1   72   26-97      3-78  (79)
 25 cd04888 ACT_PheB-BS C-terminal  98.1   3E-05 7.6E-10   48.6   9.2   70   25-95      2-75  (76)
 26 PRK04435 hypothetical protein;  97.9 0.00019 4.8E-09   44.4   9.9   74   24-98     69-146 (146)
 27 cd04872 ACT_1ZPV ACT domain pr  97.9 2.8E-05 7.2E-10   48.7   5.7   60   25-86      3-66  (88)
 28 PRK11092 bifunctional (p)ppGpp  97.9 7.5E-05 1.9E-09   46.4   7.7   70   25-95    628-700 (702)
 29 COG1707 ACT domain-containing   97.9  0.0001 2.6E-09   45.7   8.0   70   26-95      5-75  (218)
 30 PRK10820 DNA-binding transcrip  97.8 6.7E-05 1.7E-09   46.7   6.9   71   25-97      2-72  (513)
 31 PRK00194 hypothetical protein;  97.8 3.7E-05 9.5E-10   48.1   5.6   61   24-86      4-68  (90)
 32 cd04889 ACT_PDH-BS-like C-term  97.8 7.1E-05 1.8E-09   46.6   6.7   54   27-83      2-55  (56)
 33 cd04909 ACT_PDH-BS C-terminal   97.8 8.2E-05 2.1E-09   46.3   6.3   52   24-75      2-53  (69)
 34 PRK06349 homoserine dehydrogen  97.7  0.0001 2.6E-09   45.7   6.4   76   22-98    351-430 (432)
 35 PRK13011 formyltetrahydrofolat  97.7 7.4E-05 1.9E-09   46.5   5.2   68   18-85      2-73  (287)
 36 cd04887 ACT_MalLac-Enz ACT_Mal  97.7 0.00048 1.2E-08   42.2   9.1   68   25-93      1-71  (74)
 37 cd04875 ACT_F4HF-DF N-terminal  97.7 0.00015 3.8E-09   44.9   6.5   51   25-75      1-51  (74)
 38 PRK06545 prephenate dehydrogen  97.5 0.00023 5.9E-09   43.9   5.9   49   13-61    278-326 (357)
 39 cd04869 ACT_GcvR_2 ACT domains  97.5 0.00021 5.3E-09   44.1   5.4   61   26-86      2-69  (81)
 40 COG0317 SpoT Guanosine polypho  97.5 0.00055 1.4E-08   41.9   7.5   71   24-95    628-701 (701)
 41 PRK13562 acetolactate synthase  97.5 0.00062 1.6E-08   41.6   7.7   74   23-96      2-78  (84)
 42 cd02116 ACT ACT domains are co  97.5 0.00028   7E-09   43.5   5.6   57   27-83      2-59  (60)
 43 cd04877 ACT_TyrR N-terminal AC  97.4  0.0005 1.3E-08   42.1   6.3   71   25-97      2-72  (74)
 44 COG0440 IlvH Acetolactate synt  97.4  0.0011 2.8E-08   40.3   7.5   76   21-96      2-79  (163)
 45 COG0788 PurU Formyltetrahydrof  97.3 0.00071 1.8E-08   41.3   6.5   66   21-86      5-74  (287)
 46 TIGR00655 PurU formyltetrahydr  97.3 0.00058 1.5E-08   41.8   5.3   63   25-87      2-77  (294)
 47 PRK06027 purU formyltetrahydro  97.2 0.00087 2.2E-08   40.9   5.7   64   22-85      4-71  (285)
 48 cd04926 ACT_ACR_4 C-terminal    97.2   0.003 7.7E-08   38.0   8.5   59   25-85      3-65  (72)
 49 PRK11589 gcvR glycine cleavage  97.2 0.00054 1.4E-08   41.9   4.5   53   24-76     96-150 (183)
 50 cd04905 ACT_CM-PDT C-terminal   97.2  0.0044 1.1E-07   37.1   9.1   62   24-86      2-69  (80)
 51 PRK13010 purU formyltetrahydro  97.2  0.0012 3.1E-08   40.1   6.2   53   22-74      8-60  (289)
 52 cd04899 ACT_ACR-UUR-like_2 C-t  97.0  0.0059 1.5E-07   36.5   8.2   59   25-85      2-64  (70)
 53 COG0077 PheA Prephenate dehydr  97.0  0.0071 1.8E-07   36.0   8.5   67   21-88    192-264 (279)
 54 KOG2663 consensus               96.9  0.0012   3E-08   40.2   4.2   74   20-93     74-149 (309)
 55 PRK03059 PII uridylyl-transfer  96.9  0.0074 1.9E-07   35.9   8.3   49   22-71    678-726 (857)
 56 cd04900 ACT_UUR-like_1 ACT dom  96.8   0.013 3.3E-07   34.7   8.9   62   23-85      1-67  (73)
 57 cd04908 ACT_Bt0572_1 N-termina  96.8  0.0041   1E-07   37.3   6.1   58   26-87      4-61  (66)
 58 PRK05007 PII uridylyl-transfer  96.8    0.01 2.6E-07   35.2   8.0   61   22-83    697-761 (881)
 59 cd04873 ACT_UUR-ACR-like ACT d  96.8   0.014 3.6E-07   34.5   8.5   59   25-85      2-64  (70)
 60 COG3830 ACT domain-containing   96.7  0.0017 4.4E-08   39.3   3.8   51   24-76      4-54  (90)
 61 cd04870 ACT_PSP_1 CT domains f  96.7  0.0055 1.4E-07   36.6   6.2   58   26-85      2-62  (75)
 62 PRK00275 glnD PII uridylyl-tra  96.7   0.013 3.3E-07   34.6   8.0   49   22-71    703-751 (894)
 63 cd04880 ACT_AAAH-PDT-like ACT   96.6   0.024 6.1E-07   33.3   8.8   60   26-86      2-67  (75)
 64 PRK05007 PII uridylyl-transfer  96.6   0.022 5.5E-07   33.5   8.6   63   21-85    803-869 (881)
 65 COG4747 ACT domain-containing   96.6  0.0057 1.5E-07   36.5   5.6   50   23-73     69-118 (142)
 66 PRK04374 PII uridylyl-transfer  96.5   0.017 4.4E-07   34.0   7.9   49   22-71    689-737 (869)
 67 PRK01759 glnD PII uridylyl-tra  96.5   0.019 4.8E-07   33.8   7.7   51   20-71    682-732 (862)
 68 COG2716 GcvR Glycine cleavage   96.4  0.0043 1.1E-07   37.2   3.9   43   20-62     89-131 (176)
 69 PRK03381 PII uridylyl-transfer  96.4   0.022 5.5E-07   33.5   7.4   49   22-72    599-647 (781)
 70 cd04928 ACT_TyrKc Uncharacteri  96.3   0.011 2.8E-07   35.1   5.7   57   24-81      2-58  (68)
 71 PRK11898 prephenate dehydratas  96.3   0.049 1.2E-06   31.6   9.0   64   22-86    194-264 (285)
 72 cd04895 ACT_ACR_1 ACT domain-c  96.3    0.03 7.7E-07   32.7   7.8   60   25-86      3-67  (72)
 73 PRK05092 PII uridylyl-transfer  96.3   0.033 8.4E-07   32.5   8.0   49   22-71    734-782 (934)
 74 PRK11899 prephenate dehydratas  96.2   0.057 1.5E-06   31.3   9.1   62   24-86    195-262 (284)
 75 cd04904 ACT_AAAH ACT domain of  96.2   0.043 1.1E-06   31.9   8.2   68   25-95      2-73  (74)
 76 cd04925 ACT_ACR_2 ACT domain-c  96.2   0.039   1E-06   32.1   7.9   59   26-85      3-66  (74)
 77 COG4492 PheB ACT domain-contai  96.2   0.055 1.4E-06   31.3   8.7   73   24-97     73-149 (150)
 78 cd04913 ACT_AKii-LysC-BS-like_  95.8  0.0071 1.8E-07   36.0   2.7   66   26-92      5-73  (75)
 79 PRK10622 pheA bifunctional cho  95.7   0.094 2.4E-06   30.1   8.3   64   22-86    296-365 (386)
 80 cd04886 ACT_ThrD-II-like C-ter  95.7   0.038 9.8E-07   32.2   6.2   60   27-86      2-67  (73)
 81 PRK01759 glnD PII uridylyl-tra  95.7    0.15 3.9E-06   29.0   9.2   64   20-85    788-855 (862)
 82 PRK11152 ilvM acetolactate syn  95.6   0.025 6.5E-07   33.1   5.1   73   22-94      2-75  (76)
 83 cd04929 ACT_TPH ACT domain of   95.6    0.11 2.9E-06   29.7   8.2   61   25-85      2-65  (74)
 84 PRK11589 gcvR glycine cleavage  95.4   0.038 9.8E-07   32.2   5.3   57   25-85     10-66  (183)
 85 cd04931 ACT_PAH ACT domain of   95.2    0.15 3.8E-06   29.1   7.8   64   22-86     13-81  (90)
 86 TIGR00119 acolac_sm acetolacta  94.9   0.062 1.6E-06   31.1   5.2   73   23-95      2-76  (205)
 87 COG4747 ACT domain-containing   94.9    0.26 6.6E-06   27.8   8.4   63   26-92      6-68  (142)
 88 cd04893 ACT_GcvR_1 ACT domains  94.7   0.041   1E-06   32.0   3.8   56   25-84      3-58  (77)
 89 PRK03059 PII uridylyl-transfer  94.1    0.35 8.9E-06   27.1   7.5   66   18-85    782-849 (857)
 90 PRK00275 glnD PII uridylyl-tra  94.1    0.49 1.2E-05   26.3   8.7   66   18-85    809-879 (894)
 91 TIGR01693 UTase_glnD protein-P  93.9    0.35 8.9E-06   27.1   7.1   31   26-56    707-737 (903)
 92 PRK03381 PII uridylyl-transfer  93.8    0.55 1.4E-05   26.1   8.5   66   18-85    704-773 (781)
 93 PRK05092 PII uridylyl-transfer  93.8    0.55 1.4E-05   26.1   9.3   64   20-85    843-911 (934)
 94 COG3283 TyrR Transcriptional r  93.4    0.18 4.5E-06   28.7   5.0   71   25-97      2-72  (511)
 95 COG2061 ACT-domain-containing   93.3    0.35 8.9E-06   27.1   6.4   68   25-93      7-78  (170)
 96 COG2844 GlnD UTP:GlnB (protein  93.3    0.27 6.8E-06   27.7   5.7   52   18-71    786-837 (867)
 97 TIGR00691 spoT_relA RelA/SpoT   93.1    0.63 1.6E-05   25.8   7.4   71   24-94    668-741 (741)
 98 PRK09977 putative Mg(2+) trans  92.7    0.84 2.2E-05   25.1   9.0   62   33-94    152-214 (215)
 99 cd04884 ACT_CBS C-terminal ACT  92.3     0.6 1.5E-05   25.9   6.4   62   28-89      4-69  (72)
100 PRK08198 threonine dehydratase  92.1    0.92 2.4E-05   24.9   7.2   65   22-86    328-398 (406)
101 PRK07431 aspartate kinase; Pro  91.8    0.23 5.9E-06   28.0   3.8   57   29-85    277-335 (594)
102 TIGR01127 ilvA_1Cterm threonin  91.8     1.1 2.8E-05   24.5   7.7   61   24-85    307-370 (381)
103 PRK06382 threonine dehydratase  91.6    0.52 1.3E-05   26.2   5.5   67   21-87    322-394 (400)
104 cd04891 ACT_AK-LysC-DapG-like_  90.8    0.53 1.4E-05   26.1   4.8   44   29-73      7-50  (61)
105 TIGR01693 UTase_glnD protein-P  90.6     0.8   2E-05   25.2   5.6   64   19-84    827-895 (903)
106 PRK08526 threonine dehydratase  89.5     1.8 4.6E-05   23.4   6.7   65   21-85    324-394 (403)
107 PRK07334 threonine dehydratase  89.3     1.9 4.8E-05   23.3   7.0   65   22-86    322-392 (399)
108 PRK07431 aspartate kinase; Pro  88.2    0.79   2E-05   25.2   4.1   74   14-89    432-512 (594)
109 cd04936 ACT_AKii-LysC-BS-like_  87.8       1 2.6E-05   24.7   4.5   49   30-84     10-58  (63)
110 cd04921 ACT_AKi-HSDH-ThrA-like  87.7     1.3 3.3E-05   24.1   4.9   50   30-83     11-60  (80)
111 cd04915 ACT_AK-Ectoine_2 ACT d  86.7    0.86 2.2E-05   25.0   3.6   39   28-69      9-47  (66)
112 cd04892 ACT_AK-like_2 ACT doma  86.7    0.98 2.5E-05   24.7   3.9   50   31-84     11-60  (65)
113 cd04919 ACT_AK-Hom3_2 ACT doma  86.4     1.1 2.8E-05   24.5   4.0   50   30-83     11-60  (66)
114 cd04924 ACT_AK-Arch_2 ACT doma  85.8     1.2 2.9E-05   24.4   3.9   50   31-84     12-61  (66)
115 cd04916 ACT_AKiii-YclM-BS_2 AC  84.8     1.3 3.4E-05   24.0   3.8   51   30-84     11-61  (66)
116 cd04923 ACT_AK-LysC-DapG-like_  84.3     1.9 4.8E-05   23.2   4.4   48   30-83     10-57  (63)
117 TIGR00657 asp_kinases aspartat  84.2     3.5 8.9E-05   21.8   5.7   57   26-82    342-411 (504)
118 PRK06635 aspartate kinase; Rev  84.1     1.4 3.6E-05   23.9   3.6   61   29-89    268-330 (402)
119 cd04871 ACT_PSP_2 ACT domains   82.8     4.2 0.00011   21.4   5.9   58   27-86      4-72  (84)
120 COG3978 Acetolactate synthase   82.7     4.3 0.00011   21.4   7.8   76   23-98      3-79  (86)
121 pfam07881 Fucose_iso_N1 L-fuco  82.0     3.8 9.7E-05   21.6   5.2   66   14-85     91-158 (171)
122 cd04922 ACT_AKi-HSDH-ThrA_2 AC  81.6     2.4   6E-05   22.7   4.0   50   30-83     11-60  (66)
123 cd04937 ACT_AKi-DapG-BS_2 ACT   81.2     1.8 4.6E-05   23.3   3.3   26   30-55     11-36  (64)
124 COG0527 LysC Aspartokinases [A  80.7       5 0.00013   21.0   5.4   49   32-84    319-367 (447)
125 PRK08639 threonine dehydratase  79.0     5.8 0.00015   20.7   6.7   65   22-86    333-400 (418)
126 PRK09436 thrA bifunctional asp  78.2     6.2 0.00016   20.5   6.0   26   30-55    325-350 (817)
127 PRK09034 aspartate kinase; Rev  76.1     6.5 0.00017   20.4   4.9   54   30-86    318-373 (450)
128 PRK09181 aspartate kinase; Val  75.3     4.9 0.00013   21.1   4.1   50   32-85    342-391 (476)
129 PRK08210 aspartate kinase I; R  73.5       5 0.00013   21.0   3.7   51   30-86    279-329 (405)
130 PRK08841 aspartate kinase; Val  73.1     8.6 0.00022   19.8   5.6   55   24-84    319-373 (392)
131 PRK09084 aspartate kinase III;  72.8     8.7 0.00022   19.7   6.3   57   31-90    317-379 (447)
132 cd04930 ACT_TH ACT domain of t  70.9     9.7 0.00025   19.5   5.6   63   24-86     42-107 (115)
133 PRK06291 aspartate kinase; Pro  69.3     6.8 0.00017   20.3   3.7   26   30-55    331-356 (466)
134 COG1197 Mfd Transcription-repa  68.3      10 0.00026   19.4   4.4   59   21-89    872-930 (1139)
135 PRK10689 transcription-repair   67.2      11 0.00029   19.1   4.5   58   21-88    878-935 (1148)
136 cd04927 ACT_ACR-like_2 Second   66.8      12 0.00031   19.0   7.0   62   25-86      2-70  (76)
137 cd04918 ACT_AK1-AT_2 ACT domai  66.3     9.3 0.00024   19.6   3.9   44   29-75      9-52  (65)
138 TIGR00656 asp_kin_monofn aspar  65.9      12  0.0003   19.0   4.3   56   29-84    336-392 (480)
139 cd04935 ACT_AKiii-DAPDC_1 ACT   64.7      10 0.00026   19.4   3.8   53   32-87     13-69  (75)
140 cd04868 ACT_AK-like ACT domain  62.8       6 0.00015   20.6   2.4   47   32-82     12-58  (60)
141 TIGR01268 Phe4hydrox_tetr phen  61.9      15 0.00038   18.5   6.9   71   15-85     10-89  (445)
142 cd04912 ACT_AKiii-LysC-EC-like  59.5      17 0.00042   18.3   4.5   55   32-89     13-71  (75)
143 cd04932 ACT_AKiii-LysC-EC_1 AC  56.4      19 0.00048   18.0   4.1   55   32-89     13-71  (75)
144 pfam03927 NapD NapD protein. U  56.0      19 0.00049   17.9   6.1   63   32-98     11-74  (78)
145 pfam06897 DUF1269 Protein of u  50.5      13 0.00034   18.8   2.4   52   37-88     28-80  (102)
146 pfam05088 Bac_GDH Bacterial NA  46.5      28  0.0007   17.1   8.8   64   22-85     15-97  (1526)
147 TIGR00580 mfd transcription-re  46.0     5.4 0.00014   20.9  -0.1   60   21-90    790-849 (997)
148 COG3603 Uncharacterized conser  42.1      15 0.00039   18.5   1.7   26   31-56     74-99  (128)
149 cd04906 ACT_ThrD-I_1 First of   41.5      33 0.00085   16.7   6.8   59   25-86      3-65  (85)
150 COG2177 FtsX Cell division pro  38.7      23 0.00059   17.5   2.2   32   64-95     62-93  (297)
151 cd04907 ACT_ThrD-I_2 Second of  38.3      38 0.00096   16.4   6.1   60   25-86      3-64  (81)
152 PRK01002 nickel responsive reg  38.1      38 0.00097   16.4   7.9   73   23-97     58-133 (141)
153 PRK02264 N(5),N(10)-methenylte  37.4      39 0.00099   16.3   3.2   63   26-89     77-159 (318)
154 pfam00585 Thr_dehydrat_C C-ter  37.0      40   0.001   16.3   6.0   62   23-86     10-74  (91)
155 TIGR03120 one_C_mch methenylte  36.5      40   0.001   16.2   3.3   63   26-89     75-157 (312)
156 PRK10553 assembly protein for   34.8      43  0.0011   16.1   6.3   64   31-98     13-78  (87)
157 cd00545 MCH Methenyltetrahydro  34.5      44  0.0011   16.1   3.2   65   24-89     73-157 (312)
158 pfam02289 MCH Cyclohydrolase (  32.6      47  0.0012   15.9   3.3   66   23-89     72-157 (312)
159 PRK08818 prephenate dehydrogen  31.2      50  0.0013   15.8   5.4   55   25-80    298-352 (373)
160 TIGR01270 Trp_5_monoox tryptop  31.1      50  0.0013   15.7   6.5   74   22-95     44-130 (499)
161 KOG2797 consensus               30.9      50  0.0013   15.7   3.8   36   22-57    280-315 (377)
162 PRK05925 aspartate kinase; Pro  29.3      54  0.0014   15.6   3.6   44   35-83    313-356 (440)
163 TIGR02282 MltB lytic murein tr  28.2     9.4 0.00024   19.6  -1.2   72   11-85    184-261 (323)
164 KOG1250 consensus               27.7      58  0.0015   15.4   3.5   61   25-85    375-436 (457)
165 PRK08744 consensus              26.7      60  0.0015   15.3   8.0   71   24-95   1112-1189(1195)
166 cd04885 ACT_ThrD-I Tandem C-te  26.7      60  0.0015   15.3   5.3   57   28-86      3-62  (68)
167 cd04914 ACT_AKi-DapG-BS_1 ACT   25.2      51  0.0013   15.7   2.1   51   35-88     14-64  (67)
168 PRK11679 lipoprotein; Provisio  23.6      69  0.0018   15.0   3.9   46   10-55     90-135 (345)
169 PRK09466 metL bifunctional asp  23.6      70  0.0018   15.0   5.1   54   30-87    327-380 (810)
170 PRK05406 LamB/YcsF family prot  22.7      72  0.0018   14.9   3.4   40    7-49    204-246 (246)
171 COG4803 Predicted membrane pro  22.2      48  0.0012   15.8   1.5   56   37-93     89-146 (170)
172 cd00292 EF1B Elongation factor  22.1      75  0.0019   14.8   5.3   61   37-98     23-86  (88)
173 cd04890 ACT_AK-like_1 ACT doma  21.4      77   0.002   14.7   4.2   46   32-83     12-57  (62)
174 pfam11110 Phage_hub_GP28 Basep  20.8      80   0.002   14.7   3.9   45    2-46     48-103 (151)

No 1  
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00  E-value=1.9e-34  Score=202.45  Aligned_cols=97  Identities=36%  Similarity=0.574  Sum_probs=95.2

Q ss_pred             CCCCCEEEEEEECCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHH
Q ss_conf             95587378999799899765798399999828786688999899736996322774214789818999994788998999
Q 537021.9.peg.3    1 VFSDGKPRFIKIQEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVL   80 (100)
Q Consensus         1 vfg~g~~riv~i~g~~v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl   80 (100)
                      +||++.+|||+||||++|+.|++|+|+++|.|+||+||+||++||+++|||++|+++|+.+||.|+|++.+|+++|++++
T Consensus       428 vf~~~~pRIV~I~g~~vd~~p~G~mL~~~n~D~PGvIG~VGtiLG~~~INIA~m~lgR~~~gg~Ai~vl~vD~~v~~evl  507 (524)
T PRK13581        428 VFGDGEPRIVEINGFRVDAKPEGHMLVIRNRDRPGVIGKIGTLLGEHGINIASMQLGRDEAGGEALMVLSVDDPVPDEVL  507 (524)
T ss_pred             EECCCEEEEEEECCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCHHCEECCCCCCCEEEEEEECCCCCCHHHH
T ss_conf             93599068999999999985467689997078697143988888656989233574578899747999987999999999


Q ss_pred             HHHHCCCCEEEEEEEEE
Q ss_conf             99864988299999997
Q 537021.9.peg.3   81 EKLSVNVTIRFVKQFEF   97 (100)
Q Consensus        81 ~~i~~~~~v~~vr~i~~   97 (100)
                      ++|+++++|.+|+++++
T Consensus       508 ~~l~~~~~I~~v~~v~l  524 (524)
T PRK13581        508 EELKALPGILSAKAVEL  524 (524)
T ss_pred             HHHHCCCCCEEEEEEEC
T ss_conf             99866888428999759


No 2  
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.91  E-value=3.7e-24  Score=148.27  Aligned_cols=71  Identities=24%  Similarity=0.356  Sum_probs=69.6

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf             99999828786688999899736996322774214789818999994788998999998649882999999
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQF   95 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i   95 (100)
                      ||++.|+|+|||||+|+++||+++|||++|+++|+++|+.|+|++++|+++|++++++|+++|+|.+||++
T Consensus         1 TL~i~~~D~PG~Ig~i~~~L~~~~INIa~m~v~R~~~g~~A~~ii~~D~~v~~~~l~~i~~~~~I~~v~~I   71 (71)
T cd04903           1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVIEEIKKIPNIHQVILI   71 (71)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHCCCCCHHEEEECCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEC
T ss_conf             98999448699199999999865968036187515899789999992899999999999759995699979


No 3  
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=99.90  E-value=6.5e-24  Score=146.95  Aligned_cols=73  Identities=37%  Similarity=0.535  Sum_probs=71.2

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEE
Q ss_conf             9999982878668899989973699632277421478981899999478899899999864988299999997
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEF   97 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i~~   97 (100)
                      +|++.|+|+||+||+||++||+++||||+|+++|+++|+.|+|++++|+++|++++++|+++|+|.+||++++
T Consensus         1 ~Lii~~~D~PGvIg~v~~~Lg~~~INIa~m~l~R~~~g~~A~~vi~vD~~v~~~~l~~i~~~~~V~~v~~i~L   73 (73)
T cd04902           1 MLVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPVPDEVLEELRALPGILSAKVVEL   73 (73)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCEEEEEEC
T ss_conf             9899816989928999999987097788843257689987899999089999999999975989528999869


No 4  
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=99.87  E-value=3e-22  Score=138.21  Aligned_cols=71  Identities=37%  Similarity=0.498  Sum_probs=69.3

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf             99999828786688999899736996322774214789818999994788998999998649882999999
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQF   95 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i   95 (100)
                      +|++.|+|+||+||+|+++||+++|||++|+++|+.+|+.|+|++++|+++|++++++|+++|++.+||++
T Consensus         1 ~L~v~~~D~PGvi~~I~~~L~~~~iNI~~m~l~r~~~g~~A~~ii~vD~~v~~~~l~~i~~~~~v~~vr~i   71 (71)
T cd04879           1 RLLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSPVPEEVLEELKALPGIIRVRLI   71 (71)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEC
T ss_conf             98899439799899999999985978899641236799758999990898999999999769980899979


No 5  
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=99.81  E-value=6.6e-20  Score=125.82  Aligned_cols=69  Identities=25%  Similarity=0.271  Sum_probs=65.7

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf             99999828786688999899736996322774214789818999994788998999998649882999999
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQF   95 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i   95 (100)
                      ++++.|+|+|||||+|+++||++|+||++|++  +++|+.||+++++|++++++++++|+++|++.++|++
T Consensus         1 Ri~~ih~NvPG~l~~I~~il~~~~iNI~~m~~--~srg~~ay~vidvd~~~~~~~~~~l~~i~gvi~vR~i   69 (69)
T cd04901           1 RILHIHKNVPGVLGQINTILAEHNINIAAQYL--QTRGEIGYVVIDIDSEVSEELLEALRAIPGTIRVRLL   69 (69)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHCCCCHHHHCC--CCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEC
T ss_conf             96687169886899999999985999799724--2689768999990798989999999729985999769


No 6  
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.76  E-value=2.2e-18  Score=117.85  Aligned_cols=91  Identities=18%  Similarity=0.215  Sum_probs=82.0

Q ss_pred             CCCEEEEEEECCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHH
Q ss_conf             58737899979989976579839999982878668899989973699632277421478981899999478899899999
Q 537021.9.peg.3    3 SDGKPRFIKIQEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEK   82 (100)
Q Consensus         3 g~g~~riv~i~g~~v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~   82 (100)
                      .|....-|+++...+......++|++.|+|+|||+++|+++|+++++||.+|..  +++++.||+++++|++++++++++
T Consensus       318 ~G~i~nsVN~P~~~~~~~~~~~Ri~~~h~N~Pg~l~~i~~~l~~~~~NI~~~~n--~s~~~~aY~i~D~~~~~~~~~~~~  395 (409)
T PRK11790        318 NGSTLSAVNFPEVSLPEHPGGHRLLHIHENRPGVLTAINQIFAEQGINIAAQYL--QTDAEIGYVVIDVDADDSEEALEA  395 (409)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHH--CCCCCEEEEEEECCCCCCHHHHHH
T ss_conf             698114402477567778887069998079875899999999876999889862--067765499997888885999999


Q ss_pred             HHCCCCEEEEEEE
Q ss_conf             8649882999999
Q 537021.9.peg.3   83 LSVNVTIRFVKQF   95 (100)
Q Consensus        83 i~~~~~v~~vr~i   95 (100)
                      |+++|++.++|.+
T Consensus       396 l~~i~~vi~vR~l  408 (409)
T PRK11790        396 LKAIPGTIRARLL  408 (409)
T ss_pred             HHHCCCEEEEEEE
T ss_conf             9848988999860


No 7  
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase; InterPro: IPR006236    This group of sequences represent the long form of D-3-phosphoglycerate dehydrogenase, they include the serA gene of one pathway of serine biosynthesis. Shorter forms not in this group include SerA from Escherichia coli. ; GO: 0004617 phosphoglycerate dehydrogenase activity, 0006564 L-serine biosynthetic process.
Probab=99.75  E-value=6.9e-18  Score=115.20  Aligned_cols=97  Identities=34%  Similarity=0.548  Sum_probs=93.7

Q ss_pred             CCCCCEEEEEEECCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECC-CCCCEEEEEEEECCCCCHHH
Q ss_conf             95587378999799899765798399999828786688999899736996322774214-78981899999478899899
Q 537021.9.peg.3    1 VFSDGKPRFIKIQEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRS-QSTEHAISFLCIDGSILNSV   79 (100)
Q Consensus         1 vfg~g~~riv~i~g~~v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~-~~g~~A~~ii~vD~~i~~~v   79 (100)
                      +|+++.+|++++++|.+++.|+++.+++.|.|+||++|+++++|+++++||+.|+++|. ..++.+++.+.+|.++++++
T Consensus       438 ~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~d~pg~~g~~g~~~g~~~~~~~~~~~g~~~~~gg~~~~~~~~d~~~~~~~  517 (535)
T TIGR01327       438 VFGGGGPRITEIDGFEVDLEPEGYLLIILHLDKPGVIGKVGSLLGEAGINIAGFQLGRKDEKGGDALLLLSLDDPLPDEV  517 (535)
T ss_pred             EECCCCCEEEEECCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECCCCCHHH
T ss_conf             21476503676415033003575178985067652145566664103662000111544456762378886066677579


Q ss_pred             HHHHHCCCCEEEEEEEEE
Q ss_conf             999864988299999997
Q 537021.9.peg.3   80 LEKLSVNVTIRFVKQFEF   97 (100)
Q Consensus        80 l~~i~~~~~v~~vr~i~~   97 (100)
                      ++++++++++..+.++.+
T Consensus       518 ~~~~~~~~~~~~~~~~~~  535 (535)
T TIGR01327       518 LEELKELPGILDAKLVDL  535 (535)
T ss_pred             HHHHHHCCHHHHEEEEEC
T ss_conf             999863010221124409


No 8  
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit; InterPro: IPR004643   L-serine dehydratase, also called serine deaminase, catalyses the conversion of L-serine and water to pyruvate and ammonia during gluconeogenesis from serine. The enzyme forms a heterooctamer of four alpha chains and four beta chains.   This family describes the beta chain of an iron-sulphur-dependent L-serine dehydratase of the Firmicutes and Deinococcus radiodurans. A fairly deep split in a UPGMA tree separates members of this family of beta chains from the homologous region of single chain forms such as found in Escherichia coli. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.; GO: 0003941 L-serine ammonia-lyase activity, 0006094 gluconeogenesis.
Probab=99.65  E-value=2.2e-16  Score=107.26  Aligned_cols=82  Identities=18%  Similarity=0.398  Sum_probs=79.7

Q ss_pred             CCCCEEEEEEECCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHH
Q ss_conf             55873789997998997657983999998287866889998997369963227742147898189999947889989999
Q 537021.9.peg.3    2 FSDGKPRFIKIQEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLE   81 (100)
Q Consensus         2 fg~g~~riv~i~g~~v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~   81 (100)
                      -|||.++|+++||+.++++++++++++.|.|+-|+|+.|+++|+...+||..|.+.|++-+..++|-+|+|+++++.+++
T Consensus       127 IGGG~~~I~~~NG~~~~l~G~~~~IL~~~~~~~G~I~~V~~~L~~~~~N~~~l~~~~~~~~~~~~lT~E~D~~~~~~~~~  206 (208)
T TIGR00719       127 IGGGKIKIVELNGIELRLRGEYSAILLVYNDKFGVIAYVASLLAKFEINVESLEVKKKDLTNLVLLTVEVDKNLDDSLKD  206 (208)
T ss_pred             ECCCEEEEEEECCEEEEEECCCCEEEEEECCCCCEEHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCHHHHHH
T ss_conf             26873799851656999707864799986687423001024450351011134544430032899999816881057674


Q ss_pred             HH
Q ss_conf             98
Q 537021.9.peg.3   82 KL   83 (100)
Q Consensus        82 ~i   83 (100)
                      +|
T Consensus       207 ~~  208 (208)
T TIGR00719       207 EL  208 (208)
T ss_pred             CC
T ss_conf             19


No 9  
>LOAD_ACT consensus
Probab=98.90  E-value=5.4e-09  Score=68.30  Aligned_cols=71  Identities=23%  Similarity=0.242  Sum_probs=62.1

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE---CCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf             99999828786688999899736996322774214789818999994---788998999998649882999999
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI---DGSILNSVLEKLSVNVTIRFVKQF   95 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v---D~~i~~~vl~~i~~~~~v~~vr~i   95 (100)
                      .|.+..+|+||++++++++|+++|+||.++..+....++.+.+.+.+   |....+.++.++++.+++..+..+
T Consensus         1 ~l~v~~~d~pGvLa~i~~~la~~~~nI~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~v~~v~~~   74 (76)
T LOAD_ACT          1 ILEVELEDRPGVLARVLGALAERGINIVSIEQSTSEKGGLARIVFVVDVEDDEDLEKILKELLLLEDVLKVVRV   74 (76)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCCHHEEEECCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             97999957787799999999864989420670356888668899999549979999999998457887889957


No 10 
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein  results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.56  E-value=4.8e-07  Score=58.01  Aligned_cols=63  Identities=17%  Similarity=0.206  Sum_probs=57.8

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCC
Q ss_conf             399999828786688999899736996322774214789818999994788998999998649
Q 537021.9.peg.3   24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVN   86 (100)
Q Consensus        24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~   86 (100)
                      ..|-+.=.|+||+++.++++++++||||.++-+++..+.+..++++.++..-|..+++.|++-
T Consensus         2 SrIev~V~Dr~G~La~va~i~~~~~iNI~Sv~vyp~~~~~~~ilv~Rv~T~~p~~li~~L~~~   64 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRRA   64 (72)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHC
T ss_conf             559999579867299999999975975899998416889858999997259969999999988


No 11 
>PRK08577 hypothetical protein; Provisional
Probab=98.47  E-value=1e-06  Score=56.25  Aligned_cols=75  Identities=20%  Similarity=0.244  Sum_probs=61.0

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEE--EEEEEECCC--CCHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf             399999828786688999899736996322774214789818--999994788--998999998649882999999974
Q 537021.9.peg.3   24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHA--ISFLCIDGS--ILNSVLEKLSVNVTIRFVKQFEFN   98 (100)
Q Consensus        24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A--~~ii~vD~~--i~~~vl~~i~~~~~v~~vr~i~~~   98 (100)
                      .-+-+.-+|+||++|+++..||+|++||-.-.+..-++++.|  ++++++...  -++++.++|++++.|..|+..+++
T Consensus        57 ~ei~l~v~DrpGvLA~is~~La~h~vdil~te~~~l~r~e~ae~v~IvDvS~~~~~~~el~~~Lk~le~VkeV~i~~l~  135 (135)
T PRK08577         57 VELELVVEDRPGVLAKISGLLAEHGVDILATECEELKRGELAECVIIVDVSKSDIDLKELEEELKALEEVKEVEIRELE  135 (135)
T ss_pred             EEEEEEEECCCCHHHHHHHHHHHCCCCEEEHHHHEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEECC
T ss_conf             9999999459756999999998748531110211000376100899998545779999999998724531489999639


No 12 
>pfam01842 ACT ACT domain. This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5.
Probab=98.46  E-value=7.6e-07  Score=56.97  Aligned_cols=65  Identities=22%  Similarity=0.228  Sum_probs=55.9

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC-CCEEEEEEEECCCCCHHHHHHHHCCCC
Q ss_conf             39999982878668899989973699632277421478-981899999478899899999864988
Q 537021.9.peg.3   24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS-TEHAISFLCIDGSILNSVLEKLSVNVT   88 (100)
Q Consensus        24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~-g~~A~~ii~vD~~i~~~vl~~i~~~~~   88 (100)
                      ..+.+...|+||+++++++.|+++|+||..++...... ....+.....+....++++++++++.+
T Consensus         1 ~~l~v~~~DrpG~l~~v~~~la~~ginI~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   66 (66)
T pfam01842         1 TVLEVGVPDRPGLLARVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLEAALEALKKLLG   66 (66)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCC
T ss_conf             969997079883799999999877999478997466787625999996675459999999987449


No 13 
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.44  E-value=2.3e-06  Score=54.46  Aligned_cols=68  Identities=19%  Similarity=0.247  Sum_probs=59.2

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC-CCHHHHHHHHCCCCEEEEEE
Q ss_conf             9999828786688999899736996322774214789818999994788-99899999864988299999
Q 537021.9.peg.3   26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS-ILNSVLEKLSVNVTIRFVKQ   94 (100)
Q Consensus        26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~-i~~~vl~~i~~~~~v~~vr~   94 (100)
                      |.+.-+|+||++-+++++++++|.||-+-|..-.. .+.|..-++++.. =.++++++|+++|.|.+|+.
T Consensus         3 l~I~a~nk~GVL~~itgvIa~hg~NItytqqfi~~-~g~~~iY~ElE~v~d~e~Li~~L~~~~~V~eVei   71 (72)
T cd04874           3 LSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER-EGKARIYMELEGVGDIEELVEELRSLPIVREVEI   71 (72)
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEC-CCEEEEEEEEECCCCHHHHHHHHHCCCCEEEEEE
T ss_conf             79995687746999887998648986999999807-9828999999679998999999877995599994


No 14 
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=98.42  E-value=1.8e-06  Score=55.05  Aligned_cols=70  Identities=13%  Similarity=0.330  Sum_probs=58.6

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC--CCHHHHHHHHCCCCEEEEE
Q ss_conf             399999828786688999899736996322774214789818999994788--9989999986498829999
Q 537021.9.peg.3   24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS--ILNSVLEKLSVNVTIRFVK   93 (100)
Q Consensus        24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~--i~~~vl~~i~~~~~v~~vr   93 (100)
                      |+|.+.=+|+||++++++++|+..|+||.++.++.....+..-|.+.+++.  .-+.+...|.++.+|.+|.
T Consensus         1 htisvlveN~pGvL~Rit~lF~rRg~NI~Sl~v~~te~~~~sR~tivv~~~~~~i~qi~kQL~KlidVi~V~   72 (72)
T cd04878           1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKVS   72 (72)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEC
T ss_conf             979999977878999999998607855678998613799848999999788899999999985776879959


No 15 
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.39  E-value=1.7e-06  Score=55.08  Aligned_cols=58  Identities=21%  Similarity=0.199  Sum_probs=50.6

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHC
Q ss_conf             999982878668899989973699632277421478981899999478899899999864
Q 537021.9.peg.3   26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSV   85 (100)
Q Consensus        26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~   85 (100)
                      +.+.-.|+||-++++...|+++||||.+|+..-..+++.|++++.+|.  ++..++.|++
T Consensus         2 iaVev~D~pGgL~~il~~L~~~~INIeY~Yaf~~~~~~~a~lI~r~~d--~e~a~~~L~~   59 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED--IEKAIEVLQE   59 (65)
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEECC--HHHHHHHHHH
T ss_conf             899947988719999999988798879999994378976899998199--9999999998


No 16 
>cd04876 ACT_RelA-SpoT ACT  domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT  domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=98.38  E-value=1.6e-06  Score=55.33  Aligned_cols=65  Identities=20%  Similarity=0.191  Sum_probs=53.7

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE---CCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             99828786688999899736996322774214789818999994---7889989999986498829999
Q 537021.9.peg.3   28 IVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI---DGSILNSVLEKLSVNVTIRFVK   93 (100)
Q Consensus        28 i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v---D~~i~~~vl~~i~~~~~v~~vr   93 (100)
                      +.-.|+||+++.|++++++.++||.++.... .+++.+.+-+.+   |.+-=+.++.+|+++|+|.+|+
T Consensus         3 I~~~Dr~GlL~dI~~~is~~~~nI~~v~~~~-~~~~~~~~~~~v~V~d~~~L~~li~~l~~i~~V~~V~   70 (71)
T cd04876           3 VEAIDRPGLLADITTVIAEEKINILSVNTRT-DDDGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR   70 (71)
T ss_pred             EEEECCCCHHHHHHHHHHHCCCCEEEEEEEE-CCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCEEEE
T ss_conf             9998377879999999998799679999997-5898699999999889999999999987799915988


No 17 
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=98.29  E-value=4.9e-06  Score=52.72  Aligned_cols=72  Identities=10%  Similarity=0.125  Sum_probs=61.9

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEE--EEECCCCCHHHHHHHHCCCCEEEEEE
Q ss_conf             8399999828786688999899736996322774214789818999--99478899899999864988299999
Q 537021.9.peg.3   23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISF--LCIDGSILNSVLEKLSVNVTIRFVKQ   94 (100)
Q Consensus        23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~i--i~vD~~i~~~vl~~i~~~~~v~~vr~   94 (100)
                      .|+|-+.=+|+||++++|+.+|+..|.||.++.++.....+..-|-  ...|+..-+.+.+.+.++-+|.+|+-
T Consensus         2 ~HtiSvLVen~pGVL~RVaGLFsrRGyNI~SL~Vg~te~~~~SRmTivv~gd~~~ieQi~kQL~KLidVikV~d   75 (76)
T PRK06737          2 SHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNK   75 (76)
T ss_pred             CEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf             35899998178768898777862166571125674667998207999997781349999999850546699776


No 18 
>COG1760 SdaA L-serine deaminase [Amino acid transport and metabolism]
Probab=98.26  E-value=1.2e-09  Score=71.80  Aligned_cols=93  Identities=17%  Similarity=0.084  Sum_probs=86.6

Q ss_pred             CCCEEEEEEECCEEEEEECCCCEEEEEECCCCCHHHH-HHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHH
Q ss_conf             5873789997998997657983999998287866889-998997369963227742147898189999947889989999
Q 537021.9.peg.3    3 SDGKPRFIKIQEINFDVDIGRLMICIVNADILGIVVF-VGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLE   81 (100)
Q Consensus         3 g~g~~riv~i~g~~v~~~~~~~~L~i~~~D~PG~I~~-v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~   81 (100)
                      |++.+.+++++|+..+....-+.+.+.|.  ||++.. |+..+....||+..|...|..++..+.|..+.|..+.+++++
T Consensus       161 ~maaa~l~el~Ggs~~q~~~a~~i~~~h~--lGltcdpVaglV~vpcI~rnam~a~rai~aa~~am~~~~~~~~~DevI~  238 (262)
T COG1760         161 GMGAAALTELNGGSPEQSGNAPEIAMEHN--LGLTCDPVAGLVQVPCINRNAMGAVRAINGAKAAMAIEVDQRPLDEVIE  238 (262)
T ss_pred             HHHHHHHHHHHCCCHHHHCCCHHHHHHCC--CCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf             56899999982999778665358998246--8765032205111220229989999986686532211778897499999


Q ss_pred             HHHCCCCEEEEEEEEE
Q ss_conf             9864988299999997
Q 537021.9.peg.3   82 KLSVNVTIRFVKQFEF   97 (100)
Q Consensus        82 ~i~~~~~v~~vr~i~~   97 (100)
                      ++++.+....++|.+-
T Consensus       239 tM~~~g~~m~~~y~et  254 (262)
T COG1760         239 TMYETGKDMNVKYRET  254 (262)
T ss_pred             HHHHHHHHCCHHHHCC
T ss_conf             9999753343245113


No 19 
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=98.24  E-value=7.7e-06  Score=51.67  Aligned_cols=74  Identities=15%  Similarity=0.299  Sum_probs=61.9

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC--CCHHHHHHHHCCCCEEEEEEEE
Q ss_conf             8399999828786688999899736996322774214789818999994788--9989999986498829999999
Q 537021.9.peg.3   23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS--ILNSVLEKLSVNVTIRFVKQFE   96 (100)
Q Consensus        23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~--i~~~vl~~i~~~~~v~~vr~i~   96 (100)
                      .|+|-+.=+|+||++++|+.+|+..|+||.++.++.....+..=|.+.++++  .-+.+...|.++..|.+|..+.
T Consensus         2 rhtisvlVeN~pGvL~RV~glFsrRgyNIeSL~V~~te~~~iSR~Tiv~~gd~~~ieQI~kQL~KLidVi~V~dlt   77 (172)
T CHL00100          2 KHTLSVLVEDEAGVLTRIAGLFARRGFNIESLAVGPAEQIGISRITMVVPGDNRTIEQLTKQLYKLVNILKVQDIT   77 (172)
T ss_pred             CEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             3699999977867999999998517867236997214899815999999689999999999995582702643067


No 20 
>PRK10872 relA GDP/GTP pyrophosphokinase; Provisional
Probab=98.24  E-value=5.7e-06  Score=52.37  Aligned_cols=72  Identities=18%  Similarity=0.207  Sum_probs=57.4

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE---CCCCCHHHHHHHHCCCCEEEEEEEE
Q ss_conf             99999828786688999899736996322774214789818999994---7889989999986498829999999
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI---DGSILNSVLEKLSVNVTIRFVKQFE   96 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v---D~~i~~~vl~~i~~~~~v~~vr~i~   96 (100)
                      .|-+.-.|+||+++.|++++++.++||.++......+.+.+.+-+.+   |-.-=..++.+|+++|+|.+|+-++
T Consensus       668 ~I~I~a~Dr~GlL~dIt~vIs~~~~NI~~v~~~sd~~~~~~~i~~~ieV~d~~~L~~li~~Lr~i~~V~~V~Rv~  742 (743)
T PRK10872        668 VVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLH  742 (743)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf             999999778789999999998479983663526617898899999999788999999999975899941798288


No 21 
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=98.19  E-value=1.7e-05  Score=49.88  Aligned_cols=76  Identities=9%  Similarity=0.179  Sum_probs=61.8

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEC-CCCCHHHHHHHHCCCCEEEEEEEE
Q ss_conf             7983999998287866889998997369963227742147898189999947-889989999986498829999999
Q 537021.9.peg.3   21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCID-GSILNSVLEKLSVNVTIRFVKQFE   96 (100)
Q Consensus        21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD-~~i~~~vl~~i~~~~~v~~vr~i~   96 (100)
                      ...|.|-+.=+|+||++++|+.+|+..|.||.++.++.....+..-|.+.+. ++.-+.+...+.++.+|.+|+-+.
T Consensus         6 ~~~~vlSvlV~N~pGVL~RV~gLFsrRgyNIeSL~v~~te~~~~SRiTivv~~d~~leQi~kQL~KLidVi~V~~l~   82 (96)
T PRK08178          6 HDNVILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDKSRIWLLVNDDQRLEQMISQIDKLEDVLKVRRNQ   82 (96)
T ss_pred             CCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECC
T ss_conf             77089999995778789999888750566812078851389981089999889844899999986150769999889


No 22 
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=98.17  E-value=1.3e-05  Score=50.39  Aligned_cols=74  Identities=14%  Similarity=0.272  Sum_probs=60.2

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECC--CCCHHHHHHHHCCCCEEEEEEEE
Q ss_conf             839999982878668899989973699632277421478981899999478--89989999986498829999999
Q 537021.9.peg.3   23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDG--SILNSVLEKLSVNVTIRFVKQFE   96 (100)
Q Consensus        23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~--~i~~~vl~~i~~~~~v~~vr~i~   96 (100)
                      .|+|.+.=+|+||++++|+.+|+..|+||.+..++.....+..=|.+.+++  ..-+.+...|.++..|.+|..+.
T Consensus         2 r~tisvlveN~~GvL~RisglFsrRg~NI~SL~v~~te~~~iSR~Tiv~~g~~~~i~QI~kQL~KLidVi~V~dlt   77 (161)
T PRK11895          2 RHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVAPTEDPGLSRITIVTSGDERVLEQITKQLNKLIDVLKVVDLT   77 (161)
T ss_pred             CEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             4599999977867999999998506865466665024799815999999689999999999996321403466458


No 23 
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=98.17  E-value=1.1e-05  Score=50.80  Aligned_cols=68  Identities=16%  Similarity=0.218  Sum_probs=58.6

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             99998287866889998997369963227742147898189999947889989999986498829999
Q 537021.9.peg.3   26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVK   93 (100)
Q Consensus        26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr   93 (100)
                      +...-.+.||+++.|.+.++++||+|-......-.-.+.+...+-+++++|.+++++|+++++|.++.
T Consensus        98 i~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~~iP~~li~el~~i~gVk~i~  165 (167)
T COG2150          98 IYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTERPIPGDLIDELKKIDGVKKIS  165 (167)
T ss_pred             EEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCEEEE
T ss_conf             99546777658999999998759618987257966578850899980568878999986356721487


No 24 
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.16  E-value=8.2e-06  Score=51.54  Aligned_cols=72  Identities=17%  Similarity=0.189  Sum_probs=49.6

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC---HHHHHHHHCCCCEEE-EEEEEE
Q ss_conf             999982878668899989973699632277421478981899999478899---899999864988299-999997
Q 537021.9.peg.3   26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL---NSVLEKLSVNVTIRF-VKQFEF   97 (100)
Q Consensus        26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~---~~vl~~i~~~~~v~~-vr~i~~   97 (100)
                      |=+.=.|+||++++|+++|+++||+|+++.=......+.|-.++-+.....   ++++++|++++.+.. ...+++
T Consensus         3 lRl~v~D~pGVla~It~i~a~~~ISI~sv~Q~~~~~~~~a~iviiTh~~~e~~i~~al~~i~~l~~v~~~~~~iRI   78 (79)
T cd04881           3 LRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGVPSVIRV   78 (79)
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCHHHEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf             9998078785799999999974988765151576789965589995325099999999999749863678718960


No 25 
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.11  E-value=3e-05  Score=48.56  Aligned_cols=70  Identities=17%  Similarity=0.155  Sum_probs=57.6

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCC----CHHHHHHHHCCCCEEEEEEE
Q ss_conf             999998287866889998997369963227742147898189999947889----98999998649882999999
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI----LNSVLEKLSVNVTIRFVKQF   95 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i----~~~vl~~i~~~~~v~~vr~i   95 (100)
                      ++.+.-+|+||+++++.+.+++++.||-+.+-+-. -.|.|-..+.+|-.-    -++++++|++++||.+++.+
T Consensus         2 Tl~l~l~d~~G~LS~vL~~ia~~~~NILTInQsIP-i~g~A~vtiS~d~s~~~~~i~~ll~~l~~i~gV~~vei~   75 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIP-IHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV   75 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCC-CCCEEEEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEE
T ss_conf             89999828875399999999976983999647887-688899999999047766899999998707992799971


No 26 
>PRK04435 hypothetical protein; Provisional
Probab=97.89  E-value=0.00019  Score=44.36  Aligned_cols=74  Identities=24%  Similarity=0.268  Sum_probs=60.0

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCC----CHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf             3999998287866889998997369963227742147898189999947889----98999998649882999999974
Q 537021.9.peg.3   24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI----LNSVLEKLSVNVTIRFVKQFEFN   98 (100)
Q Consensus        24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i----~~~vl~~i~~~~~v~~vr~i~~~   98 (100)
                      -++.+.-+|+||+++++-+.+++++.||-+.+=+- .-.|.|-..+.+|-.-    -++++++|+++++|.+++.+..+
T Consensus        69 iTl~l~l~d~~G~LS~vL~~ia~~~~NILTInQ~I-Pi~g~A~vtiSi~~s~~~~~i~~ll~~l~~~~gV~~v~i~~~e  146 (146)
T PRK04435         69 ITLSLLLEDRVGTLSKVLNVIAELGGNILTINQSI-PINGRANVTLSIDTSSMEGDIDELLEKLRNLDGVEKVELIGME  146 (146)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCC-CCCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEEEEECC
T ss_conf             99999983887579999999997699789971688-7788677999999147667999999998707991589988629


No 27 
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.89  E-value=2.8e-05  Score=48.69  Aligned_cols=60  Identities=25%  Similarity=0.231  Sum_probs=42.6

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCC---C-HHHHHHHHCC
Q ss_conf             999998287866889998997369963227742147898189999947889---9-8999998649
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI---L-NSVLEKLSVN   86 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i---~-~~vl~~i~~~   86 (100)
                      .+.+.-+|+||+++.+++.|+++|+||....-  .-.++.-.|++.+|-+-   + +++.+++.++
T Consensus         3 VITviG~Dr~GIVa~vt~~Lae~~iNI~DisQ--ti~~g~F~M~m~vd~~~~~~~~~~l~~~L~~~   66 (88)
T cd04872           3 VITVVGKDRVGIVAGVSTKLAELNVNILDISQ--TIMDGYFTMIMIVDISESNLDFAELQEELEEL   66 (88)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEE--EEECCEEEEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             99997799887899999999986998895350--26757789999999457679999999999999


No 28 
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=97.88  E-value=7.5e-05  Score=46.45  Aligned_cols=70  Identities=16%  Similarity=0.173  Sum_probs=55.4

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE---CCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf             99999828786688999899736996322774214789818999994---788998999998649882999999
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI---DGSILNSVLEKLSVNVTIRFVKQF   95 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v---D~~i~~~vl~~i~~~~~v~~vr~i   95 (100)
                      .|-+.-.|+||+++.|++++++.++||.++.+. ...++.+.+.+.+   |..-=+.++.+|+++++|.+|+-.
T Consensus       628 ~i~I~~~dr~GlL~dIt~vIs~~~~NI~~v~~~-~~~~~~~~~~i~ieV~d~~hL~~ii~~Lr~i~~V~~V~R~  700 (702)
T PRK11092        628 EIKVEMFNHQGALANLTAAINTTGSNIQSLNTE-EKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVSRN  700 (702)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE-ECCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf             999999678788999999998579981578868-7489889999999989899999999998679992569846


No 29 
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=97.85  E-value=0.0001  Score=45.74  Aligned_cols=70  Identities=21%  Similarity=0.245  Sum_probs=60.9

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC-CCHHHHHHHHCCCCEEEEEEE
Q ss_conf             9999828786688999899736996322774214789818999994788-998999998649882999999
Q 537021.9.peg.3   26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS-ILNSVLEKLSVNVTIRFVKQF   95 (100)
Q Consensus        26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~-i~~~vl~~i~~~~~v~~vr~i   95 (100)
                      |-+.-.|+||++..++.+++++|.||-+.|..-...|..|...+++.+- -.++++++++..+.+..++..
T Consensus         5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~d~e~l~~~lks~d~v~ev~i~   75 (218)
T COG1707           5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGIDDFEKLLERLKSFDYVIEVEIH   75 (218)
T ss_pred             EEEEEECCCCHHHHHHHHHHHCCCCEEEEEHHHHCCCCEEEEEEEEECCCCHHHHHHHHHCCCEEEEEEEC
T ss_conf             68886047528998788998618965864122330671679999960787899999986334547876200


No 30 
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.84  E-value=6.7e-05  Score=46.72  Aligned_cols=71  Identities=11%  Similarity=0.157  Sum_probs=62.0

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEE
Q ss_conf             9999982878668899989973699632277421478981899999478899899999864988299999997
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEF   97 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i~~   97 (100)
                      +|=+.-+|+.|+...+..+|+.++||+-.|.+.  ..+..-+.+-++|..--+.++.+|+.++||..|+.+.|
T Consensus         2 rlei~c~DRvGi~~dil~~l~~~~idl~~iEv~--~~~~iyl~~~~~~~~~~~~l~~~ir~i~gv~~v~~v~~   72 (513)
T PRK10820          2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEID--PIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPW   72 (513)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEC--CCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf             269995155635999999999769883699972--68838997786687889999999854898543677604


No 31 
>PRK00194 hypothetical protein; Validated
Probab=97.84  E-value=3.7e-05  Score=48.05  Aligned_cols=61  Identities=23%  Similarity=0.275  Sum_probs=43.0

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC---CC-HHHHHHHHCC
Q ss_conf             399999828786688999899736996322774214789818999994788---99-8999998649
Q 537021.9.peg.3   24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS---IL-NSVLEKLSVN   86 (100)
Q Consensus        24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~---i~-~~vl~~i~~~   86 (100)
                      -.+.+.-+|+||+++.|++.|+++++||....  +.-.++.-.|++.+|-+   .+ +++.++++++
T Consensus         4 avITV~G~DrpGIVa~Vt~~La~~~~NI~Dis--Qti~~g~F~M~m~vd~~~~~~~~~~l~~~L~~~   68 (90)
T PRK00194          4 AIITVIGKDRVGIVAGVSTVLAELNVNILDIS--QTIMDGYFTMIMLVDISKSDKDFAALQEELEEL   68 (90)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCCEEECC--CCEECCEEEEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             99999879988789999999998699989551--121057468999998367679999999999999


No 32 
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional  chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.81  E-value=7.1e-05  Score=46.58  Aligned_cols=54  Identities=26%  Similarity=0.293  Sum_probs=42.7

Q ss_pred             EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHH
Q ss_conf             999828786688999899736996322774214789818999994788998999998
Q 537021.9.peg.3   27 CIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKL   83 (100)
Q Consensus        27 ~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i   83 (100)
                      .+.-+|+||.++++++.|+++||||-++.+.... ++..+.-+-+|.  |+...+.|
T Consensus         2 sVf~enrpG~L~~v~~~L~~~~InI~alsi~dt~-~~~GilRliv~~--p~~A~~~L   55 (56)
T cd04889           2 SVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFSD--PERAKEVL   55 (56)
T ss_pred             EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCC-CCCEEEEEEECC--HHHHHHHH
T ss_conf             2782389851999999999879987997620256-773489999789--89999973


No 33 
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional  chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli  do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.76  E-value=8.2e-05  Score=46.25  Aligned_cols=52  Identities=19%  Similarity=0.230  Sum_probs=41.5

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCC
Q ss_conf             3999998287866889998997369963227742147898189999947889
Q 537021.9.peg.3   24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI   75 (100)
Q Consensus        24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i   75 (100)
                      |-|++.-.|+||+|+.|+++|++++|||.++..-+...+.....-+..-.+-
T Consensus         2 ydl~vdVpD~pG~Ia~vt~~L~~~~IsI~nI~Il~~RE~~~GvLri~F~~~~   53 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE   53 (69)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEECCHH
T ss_conf             2799967999986999999999879874724876851478847999968989


No 34 
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.73  E-value=0.0001  Score=45.75  Aligned_cols=76  Identities=12%  Similarity=0.169  Sum_probs=52.3

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC---HHHHHHHHCCCCEEE-EEEEEE
Q ss_conf             9839999982878668899989973699632277421478981899999478899---899999864988299-999997
Q 537021.9.peg.3   22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL---NSVLEKLSVNVTIRF-VKQFEF   97 (100)
Q Consensus        22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~---~~vl~~i~~~~~v~~-vr~i~~   97 (100)
                      ..+-|-+.-.|+||++++|+++|++++|+|+++.= ....++.|-.++-+.....   ..++++|.+++.|.. ...+++
T Consensus       351 s~yYLRl~V~D~PGVLa~It~ila~~~ISI~sviQ-~~~~~~~a~iViiTh~~~e~~i~~Al~eI~~L~~V~~~~~~IRI  429 (432)
T PRK06349        351 TKYYLRLLVADKPGVLAKIAAIFAENGVSIESILQ-KGADDDGAEIVVVTHETSEAALRAALAAIEALDVVVGVPSVIRI  429 (432)
T ss_pred             EEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEE-CCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCEEEC
T ss_conf             54699998567503799999999876986247776-48889953699991628799999999998749652578737964


Q ss_pred             E
Q ss_conf             4
Q 537021.9.peg.3   98 N   98 (100)
Q Consensus        98 ~   98 (100)
                      +
T Consensus       430 E  430 (432)
T PRK06349        430 E  430 (432)
T ss_pred             C
T ss_conf             6


No 35 
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.69  E-value=7.4e-05  Score=46.50  Aligned_cols=68  Identities=13%  Similarity=0.131  Sum_probs=54.1

Q ss_pred             EEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC---CC-HHHHHHHHC
Q ss_conf             765798399999828786688999899736996322774214789818999994788---99-899999864
Q 537021.9.peg.3   18 DVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS---IL-NSVLEKLSV   85 (100)
Q Consensus        18 ~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~---i~-~~vl~~i~~   85 (100)
                      .-+++.+.|++.-.|+||+++.|++.|+++|.||-..+-..+...+.-+|-++.+.+   .+ +++.+++.+
T Consensus         2 ~~~~~~~IL~isCPD~~GIVA~VS~~L~~~ggNI~e~~Qf~D~~~~~FFMRvef~~~~~~~~~~~l~~~f~~   73 (287)
T PRK13011          2 SRRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFRPEDEGLDEDALRAGFAP   73 (287)
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHH
T ss_conf             988777999998999996099999999968998957625358988808999999827888899999999999


No 36 
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme  (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.67  E-value=0.00048  Score=42.23  Aligned_cols=68  Identities=12%  Similarity=0.195  Sum_probs=52.9

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEC---CCCCHHHHHHHHCCCCEEEEE
Q ss_conf             999998287866889998997369963227742147898189999947---889989999986498829999
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCID---GSILNSVLEKLSVNVTIRFVK   93 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD---~~i~~~vl~~i~~~~~v~~vr   93 (100)
                      ||=+.-.|+||++|++++.+|+.|-||.+..+-+... +....-+.++   .+-.+++++.++++|+|.-.+
T Consensus         1 TlRl~~~~~pG~Lg~vataIg~~GGnI~~idvve~~~-~~~v~Ditv~~~d~~h~~~Iv~al~~l~gV~V~~   71 (74)
T cd04887           1 TLRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGR-DYTVRDITVDAPSEEHAETIVAAVRALPEVKVLS   71 (74)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEECC-CEEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf             9899954998649999999987698567789999449-9599999998697788999999996199859999


No 37 
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase  generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.67  E-value=0.00015  Score=44.87  Aligned_cols=51  Identities=20%  Similarity=0.115  Sum_probs=45.1

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCC
Q ss_conf             999998287866889998997369963227742147898189999947889
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI   75 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i   75 (100)
                      .|.+.=.|+||+++.|++.|+++|.||....-..+...+.-+|-++.+.+-
T Consensus         1 iL~i~CpD~~GIVa~Vs~~l~~~g~nI~e~~q~~D~~~~~FFmR~~f~~~~   51 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEG   51 (74)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCC
T ss_conf             989978998881999999999879988662377369898489999997589


No 38 
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.54  E-value=0.00023  Score=43.86  Aligned_cols=49  Identities=18%  Similarity=0.151  Sum_probs=39.1

Q ss_pred             CCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf             9989976579839999982878668899989973699632277421478
Q 537021.9.peg.3   13 QEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS   61 (100)
Q Consensus        13 ~g~~v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~   61 (100)
                      ++-.-...++.+.|.+.=.|+||.|+.+.+.|++.+|||.++++....+
T Consensus       278 p~~~~g~~~~~~~l~v~i~D~pG~la~l~~~l~~~~ini~di~i~h~~r  326 (357)
T PRK06545        278 PGKHGGAIPSFYDLYVDVPDEPGVIAKVTRILAEEGISIENLRIELETR  326 (357)
T ss_pred             CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEECCEEEECCC
T ss_conf             8766899986189998789999879999999998698726777876478


No 39 
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.51  E-value=0.00021  Score=44.12  Aligned_cols=61  Identities=23%  Similarity=0.244  Sum_probs=39.6

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC--CCE----EEEEEEECCCCC-HHHHHHHHCC
Q ss_conf             999982878668899989973699632277421478--981----899999478899-8999998649
Q 537021.9.peg.3   26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS--TEH----AISFLCIDGSIL-NSVLEKLSVN   86 (100)
Q Consensus        26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~--g~~----A~~ii~vD~~i~-~~vl~~i~~~   86 (100)
                      +-+.-.|+||++.+|++.|++++|||..+...+...  .|.    |.+.+.+-...+ +++.+++.++
T Consensus         2 ~~v~G~DrpGIv~~it~~La~~~inI~~l~t~~~~a~~sg~~lF~a~~~v~lP~~~~~~~L~~~l~~l   69 (81)
T cd04869           2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEEL   69 (81)
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             89980899887999999999869981466877763999981036899999379999999999999999


No 40 
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=97.51  E-value=0.00055  Score=41.88  Aligned_cols=71  Identities=21%  Similarity=0.200  Sum_probs=58.2

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE---CCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf             399999828786688999899736996322774214789818999994---788998999998649882999999
Q 537021.9.peg.3   24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI---DGSILNSVLEKLSVNVTIRFVKQF   95 (100)
Q Consensus        24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v---D~~i~~~vl~~i~~~~~v~~vr~i   95 (100)
                      ..|-+.-.|++|.++.++++|++.++||.++..... .++.|.+-+.+   |-.--..++.+|+++|+|.+++.+
T Consensus       628 ~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~n~~~L~~i~~~l~~~~~V~~v~R~  701 (701)
T COG0317         628 VDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVKNLNHLGRVLARLKQLPDVISVRRL  701 (701)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCC-CCCEEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             999999804656699999999857883699641236-78637999999978689999999998558982789839


No 41 
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.50  E-value=0.00062  Score=41.63  Aligned_cols=74  Identities=15%  Similarity=0.221  Sum_probs=59.9

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEC---CCCCHHHHHHHHCCCCEEEEEEEE
Q ss_conf             83999998287866889998997369963227742147898189999947---889989999986498829999999
Q 537021.9.peg.3   23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCID---GSILNSVLEKLSVNVTIRFVKQFE   96 (100)
Q Consensus        23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD---~~i~~~vl~~i~~~~~v~~vr~i~   96 (100)
                      .++|-+.=.|+||++.+++++|...+.||.+.++++...-|..=|-+.++   ...-+.++.+|.+.-+|..|+.-.
T Consensus         2 krtl~~~V~dq~gvLNRIT~lF~RrqfNI~sltVg~te~~gIS~mt~vv~v~d~~~~eqlikqL~KqInVL~V~~~~   78 (84)
T PRK13562          2 TRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYD   78 (84)
T ss_pred             CEEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_conf             61899999547508889899999851782268863678988342699996486789999999998545579899983


No 42 
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=97.47  E-value=0.00028  Score=43.47  Aligned_cols=57  Identities=32%  Similarity=0.425  Sum_probs=45.4

Q ss_pred             EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC-CCHHHHHHH
Q ss_conf             999828786688999899736996322774214789818999994788-998999998
Q 537021.9.peg.3   27 CIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS-ILNSVLEKL   83 (100)
Q Consensus        27 ~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~-i~~~vl~~i   83 (100)
                      .+...|+||+++++..+|+++++||..+..+.......+...+.++.+ -.+.+++++
T Consensus         2 ~i~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l   59 (60)
T cd02116           2 TVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLEAL   59 (60)
T ss_pred             EECCCCCCCHHHHHHHHHHHCCCCHHEEEEEECCCCCCEEEEEEECCCCCHHHHHHHH
T ss_conf             3377998866999999999869895306840368897178999953777399998854


No 43 
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence 
Probab=97.41  E-value=0.0005  Score=42.11  Aligned_cols=71  Identities=20%  Similarity=0.225  Sum_probs=60.6

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEE
Q ss_conf             9999982878668899989973699632277421478981899999478899899999864988299999997
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEF   97 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i~~   97 (100)
                      +|=+.-+|+-|+.-.+-.+|++++||+....+.  ..|..-+.+-+++-.--++++.+|+.++||..||.+.|
T Consensus         2 RLeI~c~DRiGi~~eiL~lL~~~~IdL~giEi~--~~g~IYl~~~~l~f~~~~~Lm~~ir~I~GV~dVktv~~   72 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEID--PKGRIYLNFPTIEFEKLQTLMPEIRRIDGVEDVKTVPY   72 (74)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEC--CCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf             389997300014999999999779983288872--68818997787898999999999847898316788613


No 44 
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=97.35  E-value=0.0011  Score=40.32  Aligned_cols=76  Identities=14%  Similarity=0.307  Sum_probs=61.2

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECC--CCCHHHHHHHHCCCCEEEEEEEE
Q ss_conf             79839999982878668899989973699632277421478981899999478--89989999986498829999999
Q 537021.9.peg.3   21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDG--SILNSVLEKLSVNVTIRFVKQFE   96 (100)
Q Consensus        21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~--~i~~~vl~~i~~~~~v~~vr~i~   96 (100)
                      +..|+|.+.=.|.||++..+..+|+..|.||.+..++--...+.+-|-+-+..  .+-+.+.+.+..+-++..|..+.
T Consensus         2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~   79 (163)
T COG0440           2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLT   79 (163)
T ss_pred             CCEEEEEEEEECCCCEEEHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf             734899999977898141416888751766320799602789815899998278516899999987543502689847


No 45 
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=97.35  E-value=0.00071  Score=41.32  Aligned_cols=66  Identities=17%  Similarity=0.148  Sum_probs=51.4

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC----HHHHHHHHCC
Q ss_conf             79839999982878668899989973699632277421478981899999478899----8999998649
Q 537021.9.peg.3   21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL----NSVLEKLSVN   86 (100)
Q Consensus        21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~----~~vl~~i~~~   86 (100)
                      +...+|.+.-.|+||+++.|++.|+++|.||..-.-..+..++.-+|-++.+.+-.    +++.+.+..+
T Consensus         5 ~~~~~Ltv~Cpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~   74 (287)
T COG0788           5 PDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPL   74 (287)
T ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             6524999966998870999999999849866442125664478079999986388865499999889988


No 46 
>TIGR00655 PurU formyltetrahydrofolate deformylase; InterPro: IPR004810    An Escherichia coli gene designated purU has been identified and characterised. The gene codes for a 280-amino-acid protein, PurU (P37051 from SWISSPROT, 3.5.1.10 from EC). PurU is an enzyme that catalyses the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate ,.  10-formyltetrahydrofolate + H(2)O = formate +tetrahydrofolate     Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer of 32kDa subunits, is activated by methionine and inhibited by glycine. Heterotropic cooperativity is observed for activation by methionine in the presence of glycine and for inhibition by glycine in the presence of methionine. These results suggest that formyl-FH4 hydrolase is a regulatory enzyme whose main function is to balance the pools of FH4 and C1-FH4 in response to changing growth conditions. The enzyme uses methionine and glycine to sense the pools of C1-FH4 and FH4, respectively. ; GO: 0008864 formyltetrahydrofolate deformylase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=97.26  E-value=0.00058  Score=41.75  Aligned_cols=63  Identities=13%  Similarity=0.116  Sum_probs=50.3

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEE-CCCCCCEEEEEEEECCCCC-----------HHHHHHHHC-CC
Q ss_conf             999998287866889998997369963227742-1478981899999478899-----------899999864-98
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLG-RSQSTEHAISFLCIDGSIL-----------NSVLEKLSV-NV   87 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~-r~~~g~~A~~ii~vD~~i~-----------~~vl~~i~~-~~   87 (100)
                      +|++.=.|+||+|++|+++++++|.||-...=. -+..+|.-+|-++.+.+.-           +++++++.+ ++
T Consensus         2 ~Ll~~CpD~kGlva~is~f~~~~g~NIi~~dq~~~D~~~g~Ff~R~e~~~~~~~~nteikeq~~~~L~~~~~~ala   77 (294)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQFSVDPETGRFFMRVELQLEGFRLNTEIKEQEESELLAAFKSALA   77 (294)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEEECCCCCCEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf             0123159788728999999997489867417564415777131234440368731200001405899999986434


No 47 
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.21  E-value=0.00087  Score=40.85  Aligned_cols=64  Identities=22%  Similarity=0.183  Sum_probs=51.2

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC---CCH-HHHHHHHC
Q ss_conf             98399999828786688999899736996322774214789818999994788---998-99999864
Q 537021.9.peg.3   22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS---ILN-SVLEKLSV   85 (100)
Q Consensus        22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~---i~~-~vl~~i~~   85 (100)
                      ..+.|.+.=.|+||+++.|++.|+++|.||...+-..+...+.-+|-++.+.+   .+. ++.+++..
T Consensus         4 ~~~IL~isCPD~~GIVA~VT~~L~~~g~NI~e~~Qf~D~~t~~FFMRvef~~~~~~~~~~~L~~~f~~   71 (285)
T PRK06027          4 QRYILLLSCPDRPGIVAAVSNFLYEHGGNIIDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAA   71 (285)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHH
T ss_conf             45999998999996099999999968999937535458989828899999847988899999999999


No 48 
>cd04926 ACT_ACR_4 C-terminal  ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal  ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.21  E-value=0.003  Score=37.98  Aligned_cols=59  Identities=12%  Similarity=0.286  Sum_probs=48.5

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHHHC
Q ss_conf             99999828786688999899736996322774214789818999994----78899899999864
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKLSV   85 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i~~   85 (100)
                      .|=+.-.|+||.+..|+.+|.+.+++|.+-+.+.  .|+.|.-++=+    ..+++++.+++|++
T Consensus         3 ~lEv~~~DRpGLL~~itr~l~e~gL~I~~A~IsT--~Gera~DvFYVtD~~G~~idp~~~e~ir~   65 (72)
T cd04926           3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEIST--QGDMAVNVFYVTDANGNPVDPKTIEAVRQ   65 (72)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEE--CCCEEEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf             7999869968689999999998791588999960--49889899999899989989999999999


No 49 
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=97.20  E-value=0.00054  Score=41.92  Aligned_cols=53  Identities=13%  Similarity=0.076  Sum_probs=36.7

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCC--CCCEEEEEEEECCCCC
Q ss_conf             3999998287866889998997369963227742147--8981899999478899
Q 537021.9.peg.3   24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQ--STEHAISFLCIDGSIL   76 (100)
Q Consensus        24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~--~g~~A~~ii~vD~~i~   76 (100)
                      +.+-+.-.|+||++.+++..|++++|||+.++.....  .++..+..+.+.-.+|
T Consensus        96 ~~v~v~g~D~PGIV~~vt~~la~~~InI~~L~T~t~~A~~~~~~~f~~~~t~~iP  150 (183)
T PRK11589         96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERAAQLHIQITAHSP  150 (183)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCCCHHHHEEEEECCCCCCCCEEEEEEEECCC
T ss_conf             9999997898988999999999869987652221144999997369999998079


No 50 
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.19  E-value=0.0044  Score=37.12  Aligned_cols=62  Identities=23%  Similarity=0.274  Sum_probs=46.9

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCCH----HHHHHHHCC
Q ss_conf             399999828786688999899736996322774214789--818999994788998----999998649
Q 537021.9.peg.3   24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSILN----SVLEKLSVN   86 (100)
Q Consensus        24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~~----~vl~~i~~~   86 (100)
                      ..+++.-.|+||.+.++-+.|+++|||+...+- |-.++  ..-+-.+++++.+.+    +++++|++.
T Consensus         2 tsl~f~~~~~pGsL~~~L~~f~~~~iNLtkIeS-RP~~~~~~~Y~F~vd~~g~~~d~~~~~al~~l~~~   69 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIES-RPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRL   69 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEE-EECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             799999899785899999999987976799996-76389984499999985587988999999999985


No 51 
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.19  E-value=0.0012  Score=40.07  Aligned_cols=53  Identities=15%  Similarity=0.179  Sum_probs=45.9

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC
Q ss_conf             98399999828786688999899736996322774214789818999994788
Q 537021.9.peg.3   22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS   74 (100)
Q Consensus        22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~   74 (100)
                      ..+.|.+.=.|+||+++.|++.|+++|.||-..+-..+...+.-+|-++.+..
T Consensus         8 ~s~IL~l~CPD~~GIVA~VS~~L~~~g~NI~e~~Qf~D~~~~~FFMRv~f~~~   60 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQ   60 (289)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEEEECC
T ss_conf             97899998999886299999999978998807325427888808999999627


No 52 
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.00  E-value=0.0059  Score=36.47  Aligned_cols=59  Identities=20%  Similarity=0.272  Sum_probs=46.5

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHHHC
Q ss_conf             99999828786688999899736996322774214789818999994----78899899999864
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKLSV   85 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i~~   85 (100)
                      .+=+.-.|+||.+..++..|.+.|+||.....+.  .|+.|.-++-+    .++++++-+++|++
T Consensus         2 vieV~~~DrpGLL~~i~~~l~~~~l~I~~A~I~T--~g~~v~D~FyV~d~~g~~~~~~~~~~i~~   64 (70)
T cd04899           2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIAT--LGERAEDVFYVTDADGQPLDPERQEALRA   64 (70)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEE--ECCEEEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf             8999978955599999999998893899999984--09989999999899989299999999999


No 53 
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=96.97  E-value=0.0071  Score=36.04  Aligned_cols=67  Identities=19%  Similarity=0.250  Sum_probs=53.9

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCCH----HHHHHHHCCCC
Q ss_conf             798399999828786688999899736996322774214789--818999994788998----99999864988
Q 537021.9.peg.3   21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSILN----SVLEKLSVNVT   88 (100)
Q Consensus        21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~~----~vl~~i~~~~~   88 (100)
                      +...+|++.=.|+||.+.++-..|+.+|||...... |..++  +.=+..+++++.+.+    +.|++|++.-.
T Consensus       192 ~~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIES-RP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~eL~~~t~  264 (279)
T COG0077         192 PEKTSLIFSVPNKPGALYKALGVFAKRGINLTKIES-RPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITE  264 (279)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEE-CCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHEE
T ss_conf             734999998599870499999999876946226860-2068987059999999547686669999999985302


No 54 
>KOG2663 consensus
Probab=96.94  E-value=0.0012  Score=40.18  Aligned_cols=74  Identities=14%  Similarity=0.163  Sum_probs=53.7

Q ss_pred             ECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEE--EEEECCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             579839999982878668899989973699632277421478981899--99947889989999986498829999
Q 537021.9.peg.3   20 DIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAIS--FLCIDGSILNSVLEKLSVNVTIRFVK   93 (100)
Q Consensus        20 ~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~--ii~vD~~i~~~vl~~i~~~~~v~~vr   93 (100)
                      ++..|++=+.-.|.||||.+|+.+|+..|.||.++.++........-|  ++.--+.+-+.+.+.|..+-.|..|-
T Consensus        74 r~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aVl  149 (309)
T KOG2663          74 RVKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAVL  149 (309)
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCHHEEEECHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHHEEE
T ss_conf             3400158888317822888888888761577213133004445444415889554789999999999764420231


No 55 
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.93  E-value=0.0074  Score=35.93  Aligned_cols=49  Identities=10%  Similarity=0.166  Sum_probs=35.9

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE
Q ss_conf             98399999828786688999899736996322774214789818999994
Q 537021.9.peg.3   22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI   71 (100)
Q Consensus        22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v   71 (100)
                      ++..+++.-.|+||..+.++..|+.+++||...+....+. |.|+-.+-+
T Consensus       678 ~~~~i~I~~~Dr~gLFa~i~g~l~~~~lnI~~A~i~t~~d-G~ald~F~V  726 (857)
T PRK03059        678 EGLQVLVYTPDQPDLFARICGYFDRNGFSILDARVHTTRH-GYALDTFQV  726 (857)
T ss_pred             CEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEECCC-CCEEEEEEE
T ss_conf             8589999957888829999999987898278889998378-838999999


No 56 
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.83  E-value=0.013  Score=34.65  Aligned_cols=62  Identities=19%  Similarity=0.308  Sum_probs=44.8

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE---CC-CC-CHHHHHHHHC
Q ss_conf             8399999828786688999899736996322774214789818999994---78-89-9899999864
Q 537021.9.peg.3   23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI---DG-SI-LNSVLEKLSV   85 (100)
Q Consensus        23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v---D~-~i-~~~vl~~i~~   85 (100)
                      +.-+++.-+|+||.+++++..|+..|+||..-+....+. |.|+-.+-+   ++ ++ +++-+++|++
T Consensus         1 ~tei~v~~~Dr~gLf~~i~~~l~~~~l~I~~A~I~t~~~-g~~~D~F~V~d~~g~~i~~~~~~~~i~~   67 (73)
T cd04900           1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRD-GYALDTFVVLDPDGEPIGERERLARIRE   67 (73)
T ss_pred             CEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEECCC-CEEEEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf             939999968978789999999998898599999998589-8699999998899997999999999999


No 57 
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.80  E-value=0.0041  Score=37.31  Aligned_cols=58  Identities=24%  Similarity=0.291  Sum_probs=43.3

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCC
Q ss_conf             99998287866889998997369963227742147898189999947889989999986498
Q 537021.9.peg.3   26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNV   87 (100)
Q Consensus        26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~   87 (100)
                      |-+.-+|+||.++.++.+|+++||||-++.+.-..  +.++.-+-+|.  |+...+.|++.-
T Consensus         4 lSVFlENk~GrL~~v~~~L~~~~InI~AlsiaDt~--dfgilRlivdd--p~~A~~~L~~~G   61 (66)
T cd04908           4 LSVFLENKPGRLAAVTEILSEAGINIRALSIADTS--EFGILRLIVSD--PDKAKEALKEAG   61 (66)
T ss_pred             EEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC--CCCEEEEEECC--HHHHHHHHHHCC
T ss_conf             89996179645999999998789978998721366--86589999489--899999999879


No 58 
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.77  E-value=0.01  Score=35.18  Aligned_cols=61  Identities=13%  Similarity=0.120  Sum_probs=45.0

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHH
Q ss_conf             98399999828786688999899736996322774214789818999994----788998999998
Q 537021.9.peg.3   22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKL   83 (100)
Q Consensus        22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i   83 (100)
                      ++.-+++..+|+||..+.++..|+.+++||...++.+.+. |.++-.+-+    +++++++-+++|
T Consensus       697 g~tei~I~~~Dr~~LFa~i~g~L~~~~lnI~~A~I~t~~d-g~~ld~F~V~~~~g~~~~~~r~~~i  761 (881)
T PRK05007        697 GGTEIFIYSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRD-GMAMDTFIVLEPDGSPLSQDRHQVI  761 (881)
T ss_pred             CEEEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEEEECCC-CEEEEEEEEECCCCCCCCHHHHHHH
T ss_conf             8079999960788739999999986898368878798179-8089999997788998998999999


No 59 
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=96.75  E-value=0.014  Score=34.48  Aligned_cols=59  Identities=15%  Similarity=0.338  Sum_probs=44.6

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHHHC
Q ss_conf             99999828786688999899736996322774214789818999994----78899899999864
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKLSV   85 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i~~   85 (100)
                      .+.+.-.|+||.+..++..|.+.|+||..-+....  |+.+.-++-+    ..+.+++-.++|++
T Consensus         2 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~I~T~--~~~~~D~F~V~d~~g~~~~~~~~~~l~~   64 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTT--GERALDVFYVTDSDGRPLDPERIARLEE   64 (70)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEC--CCEEEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf             89999689788999999999887950779999964--9989999999889969399999999999


No 60 
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=96.74  E-value=0.0017  Score=39.28  Aligned_cols=51  Identities=25%  Similarity=0.357  Sum_probs=38.1

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC
Q ss_conf             39999982878668899989973699632277421478981899999478899
Q 537021.9.peg.3   24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL   76 (100)
Q Consensus        24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~   76 (100)
                      ..+.+.-+|+||+++.+++.|+++|+||.+..  +.--.+.--|.+=+|-+..
T Consensus         4 avITV~GkDr~GIva~is~vLAe~~vNIldis--Qtvm~~~ftm~~lV~~~~~   54 (90)
T COG3830           4 AVITVIGKDRVGIVAAVSRVLAEHGVNILDIS--QTVMDGFFTMIMLVDISKE   54 (90)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCCEEEHH--HHHHHHHCEEEEEECCCHH
T ss_conf             89999758877334999999997698188777--9999623116657727767


No 61 
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.70  E-value=0.0055  Score=36.61  Aligned_cols=58  Identities=17%  Similarity=0.224  Sum_probs=37.9

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEE--EEEECCC-CCHHHHHHHHC
Q ss_conf             999982878668899989973699632277421478981899--9994788-99899999864
Q 537021.9.peg.3   26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAIS--FLCIDGS-ILNSVLEKLSV   85 (100)
Q Consensus        26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~--ii~vD~~-i~~~vl~~i~~   85 (100)
                      +.+.-+|+||+++.++++|+++++||-...  +.--.+.-.|  .+++.++ -...+++++..
T Consensus         2 Itv~G~DrpGi~a~v~~~La~~~~~IlDI~--Q~vi~~~l~l~~lv~ip~~~~~~~l~k~L~~   62 (75)
T cd04870           2 ITVTGPDRPGLTSALTEVLAAHGVRILDVG--QAVIHGRLSLGILVQIPDSADSEALLKDLLF   62 (75)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCEEEEEE--HHHCCCEEEEEEEEEECCCCCHHHHHHHHHH
T ss_conf             899779988789999999987799089625--5506475779999980785346899999999


No 62 
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=96.68  E-value=0.013  Score=34.62  Aligned_cols=49  Identities=16%  Similarity=0.181  Sum_probs=36.4

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE
Q ss_conf             98399999828786688999899736996322774214789818999994
Q 537021.9.peg.3   22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI   71 (100)
Q Consensus        22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v   71 (100)
                      ++..+++.-.|+||..+.++..|+.+|.||...++...+. |.++-.+-+
T Consensus       703 g~t~i~V~~~D~~gLFa~i~g~l~~~~lnI~~A~I~t~~d-g~~lD~f~V  751 (894)
T PRK00275        703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSS-QFTLDTYIV  751 (894)
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEECCC-CEEEEEEEE
T ss_conf             8069999925887659999999997898268989887379-808999999


No 63 
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal  ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=96.60  E-value=0.024  Score=33.27  Aligned_cols=60  Identities=20%  Similarity=0.237  Sum_probs=45.1

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCC----HHHHHHHHCC
Q ss_conf             9999828786688999899736996322774214789--81899999478899----8999998649
Q 537021.9.peg.3   26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSIL----NSVLEKLSVN   86 (100)
Q Consensus        26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~----~~vl~~i~~~   86 (100)
                      +++.-+|+||.+.++-+.+++++||+..... |..++  +.-.-.+++++...    ++++++|++.
T Consensus         2 i~f~~~~~pGaL~~~L~~F~~~~iNlt~IeS-RP~~~~~~~y~F~id~eg~~~~~~~~~~l~~l~~~   67 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIES-RPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRV   67 (75)
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEE-EECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             8999689787899999999988966799995-77499995699999971685978999999999984


No 64 
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.59  E-value=0.022  Score=33.48  Aligned_cols=63  Identities=14%  Similarity=0.298  Sum_probs=50.1

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHHHC
Q ss_conf             798399999828786688999899736996322774214789818999994----78899899999864
Q 537021.9.peg.3   21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKLSV   85 (100)
Q Consensus        21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i~~   85 (100)
                      ...+.+=+.-.|+||.++.|+.+|.+.|+||.+-..  .+.|+.|.-+.=+    .++++++..++|++
T Consensus       803 ~~~TviEv~a~DrpGLL~~I~~~f~~~~l~I~~AKI--sT~GerveDvFyVtd~~g~kL~~~~~~~l~~  869 (881)
T PRK05007        803 DRKSFMELIALDQPGLLARVGKIFADLGISLHGAKI--TTIGERVEDLFILATADGRALNEELQQELRQ  869 (881)
T ss_pred             CCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE--CCCCCEEEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf             873899998588067999999999988987989896--2547648999999889979698999999999


No 65 
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=96.59  E-value=0.0057  Score=36.54  Aligned_cols=50  Identities=14%  Similarity=0.251  Sum_probs=41.0

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECC
Q ss_conf             839999982878668899989973699632277421478981899999478
Q 537021.9.peg.3   23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDG   73 (100)
Q Consensus        23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~   73 (100)
                      ...|-+.-+|+||-+.+|...|+++++|+.+.+-.-..+ ..|+.++.++.
T Consensus        69 ~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~KAlli~r~ed  118 (142)
T COG4747          69 TDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QKALLIVRVED  118 (142)
T ss_pred             EEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECC-CEEEEEEEHHH
T ss_conf             248999815888708899998741486720145653037-33799998457


No 66 
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.55  E-value=0.017  Score=33.98  Aligned_cols=49  Identities=12%  Similarity=0.171  Sum_probs=34.2

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE
Q ss_conf             98399999828786688999899736996322774214789818999994
Q 537021.9.peg.3   22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI   71 (100)
Q Consensus        22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v   71 (100)
                      ++.-+++.-.|+||..+.+++.|+.+++||..-+....+ .+.++-...+
T Consensus       689 ~~~ei~I~~~Dr~gLFa~i~g~L~~~~l~I~~A~I~t~~-~g~vlDtF~V  737 (869)
T PRK04374        689 DALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAP-HDAIFDVFEV  737 (869)
T ss_pred             CEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECC-CCEEEEEEEE
T ss_conf             838999992688776999999999789976877778758-9838999996


No 67 
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.49  E-value=0.019  Score=33.79  Aligned_cols=51  Identities=18%  Similarity=0.159  Sum_probs=40.0

Q ss_pred             ECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE
Q ss_conf             5798399999828786688999899736996322774214789818999994
Q 537021.9.peg.3   20 DIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI   71 (100)
Q Consensus        20 ~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v   71 (100)
                      ..++..+++.-+|+||..+.++..|+.+++||...++..... |.++-.+-+
T Consensus       682 ~~~~tei~I~~~Dr~~LFa~i~~~l~~~~lnI~~A~I~t~~d-g~~ld~f~V  732 (862)
T PRK01759        682 SRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQD-GYVFDSFIV  732 (862)
T ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCC-CCEEEEEEE
T ss_conf             788269999943886689999999997898358867477378-838999999


No 68 
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=96.36  E-value=0.0043  Score=37.18  Aligned_cols=43  Identities=19%  Similarity=0.206  Sum_probs=35.2

Q ss_pred             ECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf             5798399999828786688999899736996322774214789
Q 537021.9.peg.3   20 DIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST   62 (100)
Q Consensus        20 ~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g   62 (100)
                      .+..+-.-+.-.|+||++.+++.+|..+||||++|...+...-
T Consensus        89 ~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~  131 (176)
T COG2716          89 NPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAP  131 (176)
T ss_pred             CCCEEEEEEEECCCCCHHHHHHHHHHHCCCCHHHCEEEEEECC
T ss_conf             8831999997168835899999998646986555045566579


No 69 
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.36  E-value=0.022  Score=33.49  Aligned_cols=49  Identities=10%  Similarity=0.142  Sum_probs=38.8

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEC
Q ss_conf             983999998287866889998997369963227742147898189999947
Q 537021.9.peg.3   22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCID   72 (100)
Q Consensus        22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD   72 (100)
                      ++..+++.-.|+||..++++.+|+.+++||-+-++..  ..|.|+....+.
T Consensus       599 ~~~~v~V~~~DrpgLfa~iag~La~~~l~I~~A~i~t--~dg~ald~f~V~  647 (781)
T PRK03381        599 PGFEVTVVAPDRRGLLSKAAGVLALNRLRVRSASANS--HDGVALLEFVVS  647 (781)
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEC--CCCCEEEEEEEC
T ss_conf             8479999846875459999999986799358899972--699089999971


No 70 
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.31  E-value=0.011  Score=35.06  Aligned_cols=57  Identities=19%  Similarity=0.267  Sum_probs=48.4

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHH
Q ss_conf             3999998287866889998997369963227742147898189999947889989999
Q 537021.9.peg.3   24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLE   81 (100)
Q Consensus        24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~   81 (100)
                      |-+.+.-.|+|..+++++++|++-|.||..-++.. +..|+++-+.-+|+=..++.-.
T Consensus         2 hEitfst~dkPklLsqls~lL~d~GLNI~EAH~fs-T~DGysLdVFVV~GW~~ee~~~   58 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFS-TDDGLALDIFVVTGWKRGETAA   58 (68)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHEEE-CCCCCEEEEEEECCCCHHHHHH
T ss_conf             06998617851589999999998173442342264-3787278899981888253899


No 71 
>PRK11898 prephenate dehydratase; Provisional
Probab=96.31  E-value=0.049  Score=31.62  Aligned_cols=64  Identities=19%  Similarity=0.271  Sum_probs=47.0

Q ss_pred             CCCEEEEEE-CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCCH----HHHHHHHCC
Q ss_conf             983999998-28786688999899736996322774214789--818999994788998----999998649
Q 537021.9.peg.3   22 GRLMICIVN-ADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSILN----SVLEKLSVN   86 (100)
Q Consensus        22 ~~~~L~i~~-~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~~----~vl~~i~~~   86 (100)
                      +...|++.- .|+||.+.++-+.|+++|||...... |-.++  +.-+-.+++++.+.+    ++|++|++.
T Consensus       194 ~KtSl~f~~~~d~pGaL~~~L~~Fa~~~INLtkIeS-RP~~~~~~~Y~FyiD~egh~~d~~v~~aL~~l~~~  264 (285)
T PRK11898        194 DKTSLALTLPANVPGALYKALSEFAWRGINLTRIES-RPTKTGLGEYFFFIDLEGHIDDVLVAEALKELEAL  264 (285)
T ss_pred             CEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEE-CCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             779999994899986799999999987937588982-01689996189999984687989999999999985


No 72 
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.28  E-value=0.03  Score=32.73  Aligned_cols=60  Identities=12%  Similarity=0.164  Sum_probs=47.8

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEC-----CCCCHHHHHHHHCC
Q ss_conf             999998287866889998997369963227742147898189999947-----88998999998649
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCID-----GSILNSVLEKLSVN   86 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD-----~~i~~~vl~~i~~~   86 (100)
                      .+=+.-.|+||.+..+++.|++.+++|..-+.  .+.|+.++-+.-+-     +--++..++.|++-
T Consensus         3 vieV~s~drpGlL~~v~q~L~dl~L~I~~A~I--sT~Ge~~~DVFyVtD~~G~Ki~d~~~i~~I~~~   67 (72)
T cd04895           3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYI--SSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKS   67 (72)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHCCEEEEEEEE--ECCCCEEEEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf             99980699986599999999868928989999--425988999999806999995588999999998


No 73 
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.27  E-value=0.033  Score=32.52  Aligned_cols=49  Identities=18%  Similarity=0.248  Sum_probs=38.8

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE
Q ss_conf             98399999828786688999899736996322774214789818999994
Q 537021.9.peg.3   22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI   71 (100)
Q Consensus        22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v   71 (100)
                      +...+++.-.|+||..+.++..|+.+|.||...+....+. |.|+-.+-+
T Consensus       734 ~~tev~V~~~DrpgLFa~iagala~~glnI~dA~I~T~~d-G~alD~F~V  782 (934)
T PRK05092        734 GVTELTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTD-GRALDTFWI  782 (934)
T ss_pred             CEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECCC-CEEEEEEEE
T ss_conf             8489999961788859999999997899547889898489-809999999


No 74 
>PRK11899 prephenate dehydratase; Provisional
Probab=96.25  E-value=0.057  Score=31.27  Aligned_cols=62  Identities=13%  Similarity=0.089  Sum_probs=46.1

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCCHH----HHHHHHCC
Q ss_conf             399999828786688999899736996322774214789--8189999947889989----99998649
Q 537021.9.peg.3   24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSILNS----VLEKLSVN   86 (100)
Q Consensus        24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~~~----vl~~i~~~   86 (100)
                      ..|++.-.|+||.+.++-+.|+.+|||+....- |-.++  +.-+-.+++++-+.++    +|++|+..
T Consensus       195 Tsl~~~~~d~pGaL~~vL~~Fa~~~INLtkIeS-RP~~~~~~~Y~F~iD~egh~~d~~~~~al~~l~~~  262 (284)
T PRK11899        195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLES-YMVGGSFTATQFYADIEGHPEDRNVALALEELRFF  262 (284)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEE-EECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             789997389861999999999987987568850-12599984399999960687989999999999985


No 75 
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=96.18  E-value=0.043  Score=31.89  Aligned_cols=68  Identities=13%  Similarity=0.194  Sum_probs=47.3

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCC--HHHHHHHHCCCCEEEEEEE
Q ss_conf             99999828786688999899736996322774214789--81899999478899--8999998649882999999
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSIL--NSVLEKLSVNVTIRFVKQF   95 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~--~~vl~~i~~~~~v~~vr~i   95 (100)
                      .+++.=+|+||.++++-..+.+++||...... |..+.  ..-.-.++.++..+  ++++++|++.  +..+|.+
T Consensus         2 Si~fs~~~~~GaL~~~L~~F~~~~iNlt~IES-RPs~~~~~~y~FfvD~eg~~~~i~~al~~Lk~~--~~~vkil   73 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHIES-RPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRV--VADVNIL   73 (74)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHH--CCEEEEC
T ss_conf             69999589864899999999987986789983-338999975999999608989999999999974--7828851


No 76 
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.18  E-value=0.039  Score=32.12  Aligned_cols=59  Identities=17%  Similarity=0.118  Sum_probs=41.4

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEC----CCCC-HHHHHHHHC
Q ss_conf             99998287866889998997369963227742147898189999947----8899-899999864
Q 537021.9.peg.3   26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCID----GSIL-NSVLEKLSV   85 (100)
Q Consensus        26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD----~~i~-~~vl~~i~~   85 (100)
                      +=+.-.|+||.++.++.+|++.++||.+-+...... ..|..+.-.|    .++. ++=++.|++
T Consensus         3 iEltg~DRPGLLsei~avLsdl~~~v~~A~iwT~~~-Rva~v~yvtD~~tG~~I~d~~Rla~I~~   66 (74)
T cd04925           3 IELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNG-RLACVIYVRDEETGAPIDDPIRLASIED   66 (74)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCC-EEEEEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf             887139987269999999986878458878522377-1799999972678996789899999999


No 77 
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=96.16  E-value=0.055  Score=31.34  Aligned_cols=73  Identities=22%  Similarity=0.220  Sum_probs=56.5

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC----CCHHHHHHHHCCCCEEEEEEEEE
Q ss_conf             399999828786688999899736996322774214789818999994788----99899999864988299999997
Q 537021.9.peg.3   24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS----ILNSVLEKLSVNVTIRFVKQFEF   97 (100)
Q Consensus        24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~----i~~~vl~~i~~~~~v~~vr~i~~   97 (100)
                      .+|.+.-+|+-|+++++-..+++.++||-+.+-.- .-.|.|-.-+.+|-.    --++++++|+++++|..|+.+..
T Consensus        73 ~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~i-pl~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeivgs  149 (150)
T COG4492          73 ITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTI-PLQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIVGS  149 (150)
T ss_pred             EEEEEEEHHHHHHHHHHHHHHHHHCCCEEEEECCC-CCCCEEEEEEEEECHHHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf             99999971333159999999997278479986044-437642589999713324229999999852155468998506


No 78 
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=95.78  E-value=0.0071  Score=36.03  Aligned_cols=66  Identities=20%  Similarity=0.087  Sum_probs=42.6

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CEEEEEEEECCCCCHHHHHHHHCCCCEEEE
Q ss_conf             9999828786688999899736996322774214789---818999994788998999998649882999
Q 537021.9.peg.3   26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST---EHAISFLCIDGSILNSVLEKLSVNVTIRFV   92 (100)
Q Consensus        26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g---~~A~~ii~vD~~i~~~vl~~i~~~~~v~~v   92 (100)
                      -+..=.|+||+.+++-+.|+++|||+.-.-= ....+   ..++++-+-|-+-..++++++++--+..++
T Consensus         5 tl~gvpd~PG~aa~iF~~La~~~InVDmIvQ-~~~~~~~~disFTv~~~dl~~a~~vl~~~~~~l~~~~v   73 (75)
T cd04913           5 TLRGVPDKPGVAAKIFGALAEANINVDMIVQ-NVSRDGTTDISFTVPKSDLKKALAVLEKLKKELGAEEV   73 (75)
T ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCEEEEEE-CCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             9828999996699999999985984799986-16789945899990499999999999999986497234


No 79 
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=95.75  E-value=0.094  Score=30.11  Aligned_cols=64  Identities=13%  Similarity=0.159  Sum_probs=47.0

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCCH----HHHHHHHCC
Q ss_conf             98399999828786688999899736996322774214789--818999994788998----999998649
Q 537021.9.peg.3   22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSILN----SVLEKLSVN   86 (100)
Q Consensus        22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~~----~vl~~i~~~   86 (100)
                      +...|++.-.|+||.+..+-+.|+.+|||.....- |-.++  +.-+-.+++++.+.+    ++|++|++.
T Consensus       296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~~INLtkIeS-RP~~~~~~~Y~FfvD~eGh~~d~~v~~aL~~l~~~  365 (386)
T PRK10622        296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLES-RPIHGNPWEEMFYLDIQANLESAEMQKALKELGEI  365 (386)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             73689996699987799999999987978657863-20799996479999972787999999999999986


No 80 
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in  this CD are  N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.70  E-value=0.038  Score=32.17  Aligned_cols=60  Identities=15%  Similarity=0.151  Sum_probs=40.6

Q ss_pred             EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC---CCEEEEEEEECC---CCCHHHHHHHHCC
Q ss_conf             99982878668899989973699632277421478---981899999478---8998999998649
Q 537021.9.peg.3   27 CIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS---TEHAISFLCIDG---SILNSVLEKLSVN   86 (100)
Q Consensus        27 ~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~---g~~A~~ii~vD~---~i~~~vl~~i~~~   86 (100)
                      -+.=.|+||.++++.+++++.|.||-...-.|...   -+.+-..+.+..   +=-++++++|++.
T Consensus         2 ~v~i~D~PG~L~~l~~~ia~~gaNI~~i~H~R~~~~~~~~~~~v~i~~Et~~~eh~~~i~~~L~~~   67 (73)
T cd04886           2 RVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA   67 (73)
T ss_pred             EEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHC
T ss_conf             899348981799999999986982899999864588988769999999849999999999999986


No 81 
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=95.69  E-value=0.15  Score=29.02  Aligned_cols=64  Identities=16%  Similarity=0.230  Sum_probs=48.9

Q ss_pred             ECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHHHC
Q ss_conf             5798399999828786688999899736996322774214789818999994----78899899999864
Q 537021.9.peg.3   20 DIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKLSV   85 (100)
Q Consensus        20 ~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i~~   85 (100)
                      +.....+=+.-.|+||.++.|+.+|.+.|++|.+-..  .+.|+.+.-+.=+    ..+++++-.++|++
T Consensus       788 s~~~TvleV~a~DrpGLL~~I~~~f~~~~l~I~~AkI--~T~Gerv~DvFyVtd~~g~kl~d~~~~~l~~  855 (862)
T PRK01759        788 KQEHTEMELFALDKAGLLAEVSQIFSELNLNLLNAKI--TTIGEKAEDFFILTNQQGQALDEQERKALKS  855 (862)
T ss_pred             CCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE--CCCCCEEEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf             8884899999688178999999999987987989896--2678548999999789979199899999999


No 82 
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=95.64  E-value=0.025  Score=33.11  Aligned_cols=73  Identities=11%  Similarity=0.095  Sum_probs=62.9

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHH-HHHHCCCCEEEEEE
Q ss_conf             98399999828786688999899736996322774214789818999994788998999-99864988299999
Q 537021.9.peg.3   22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVL-EKLSVNVTIRFVKQ   94 (100)
Q Consensus        22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl-~~i~~~~~v~~vr~   94 (100)
                      ..|.|.+.-+++|+++-+|..+.-..|.+|.+|++.....++.+-.-+.++++=|-++| ..|.++.+|..++.
T Consensus         2 ~~h~L~i~a~~rPevLERiLRVvRHRGF~v~~m~m~~~~~~~~~~i~ltV~SdR~i~lL~~QL~KL~DV~~v~v   75 (76)
T PRK11152          2 MQHQLTIKARFRPEVLERVLRVVRHRGFQVCQMNMTANSDAQNINIELTVASERAIDLLSSQLNKLVDVAHVEI   75 (76)
T ss_pred             CEEEEEEEEECCCHHHEEEEEEEEECCEEEEEEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHCCEEEEEE
T ss_conf             51899999706977831263478416849999762673899889999999057739999998874271689996


No 83 
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.58  E-value=0.11  Score=29.70  Aligned_cols=61  Identities=15%  Similarity=0.198  Sum_probs=42.8

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC-CCEEEEEEEECCCCC--HHHHHHHHC
Q ss_conf             9999982878668899989973699632277421478-981899999478899--899999864
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS-TEHAISFLCIDGSIL--NSVLEKLSV   85 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~-g~~A~~ii~vD~~i~--~~vl~~i~~   85 (100)
                      .+++.=+|+||.++++-.++.+++||.........++ .+.-.-.+++|+.-.  +++++.|++
T Consensus         2 SlvFslk~~~GaL~~~L~~F~~~~iNlthIESRpSk~~~~~Y~ffvD~e~~~~~l~~~l~~Lk~   65 (74)
T cd04929           2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR   65 (74)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH
T ss_conf             0999968865679999999998697779985587878897189999903997999999999998


No 84 
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=95.41  E-value=0.038  Score=32.17  Aligned_cols=57  Identities=21%  Similarity=0.236  Sum_probs=40.0

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHC
Q ss_conf             9999982878668899989973699632277421478981899999478899899999864
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSV   85 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~   85 (100)
                      .+.+.-.|+||+++.++.+++++|+||..=++.+-.  +..-+++-+.+  +.+.++++++
T Consensus        10 vit~~G~DrpGiv~~v~~~~~~~g~ni~dSrm~~lg--~~f~~imlvSg--~~~ai~~lE~   66 (183)
T PRK11589         10 VITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLG--EEFTFIMLLSG--SWNAITLIES   66 (183)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CEEEEEEEECC--CHHHHHHHHH
T ss_conf             999970898738999999999769987266688745--70699999408--8758899986


No 85 
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.21  E-value=0.15  Score=29.07  Aligned_cols=64  Identities=17%  Similarity=0.294  Sum_probs=46.8

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCC---HHHHHHHHCC
Q ss_conf             98399999828786688999899736996322774214789--81899999478899---8999998649
Q 537021.9.peg.3   22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSIL---NSVLEKLSVN   86 (100)
Q Consensus        22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~---~~vl~~i~~~   86 (100)
                      +...+++.-+|+||.+.++-..+++++||.....- |..+.  ..-.-.+++|..-.   +++++.|++-
T Consensus        13 ~ktSlifs~~~~~GaL~~~L~~F~~~~INLt~IES-RPsk~~~~eY~FfVD~e~~~~~~l~~~i~~Lr~~   81 (90)
T cd04931          13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIES-RPSRLNKDEYEFFINLDKKSAPALDPIIKSLRND   81 (90)
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             98899999389767799999999987967478876-7489999608999992388757799999999985


No 86 
>TIGR00119 acolac_sm acetolactate synthase, small subunit; InterPro: IPR004789   Acetolactate synthases are a group of biosynthetic enzymes apparently found in plants, fungi and bacteria that are capable of de novo synthesis of the branched-chain amino acids . They can all synthesize acetolactate from pyruvate in the biosynthesis of valine, while some are also capable of synthesizing acetohydroxybutyrate from pyruvate and ketobutyrate during the biosynthesis of isoleucine. These enzymes generally require thiamin diphosphate, FAD and a divalent metal ion for catalysis, though some enzymes specific for acetolactate synthesis do not require FAD. They are composed of two subunits, a large catalytic subunit, and a smaller regulatory subunit which binds the natural modulators (valine, and in some cases leucine or isoleucine).   These enzymes are the target for currently-used herbicides such as sulphonylureas and imidazolinones. Their restricted distribution also makes them potential targets for the development of novel antibacterial and antifungal compounds.   This entry represents the small regulatory subunit of acetolactate synthase. It contains an ACT domain, which is a predicted regulatory ligand-binding fold often found in proteins regulated by small-molecule effectors .; GO: 0003984 acetolactate synthase activity, 0009082 branched chain family amino acid biosynthetic process.
Probab=94.94  E-value=0.062  Score=31.09  Aligned_cols=73  Identities=15%  Similarity=0.304  Sum_probs=57.6

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEE--ECCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf             839999982878668899989973699632277421478981899999--4788998999998649882999999
Q 537021.9.peg.3   23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLC--IDGSILNSVLEKLSVNVTIRFVKQF   95 (100)
Q Consensus        23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~--vD~~i~~~vl~~i~~~~~v~~vr~i   95 (100)
                      .|.+-+.-.++||++.++...+...+.||.++.++.....+.+-+.+.  -|..+-+.+...+.++-.+..+.-+
T Consensus         2 ~~~~~~~~~~~~g~l~~~~g~~~~~g~n~~~~~~~~~~~~~~~~~~~~~~g~~~~~e~~~~~l~~~~~~~~~~~~   76 (205)
T TIGR00119         2 KHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQLTKQLNKLVDVLKVSDL   76 (205)
T ss_pred             CEEEEEEEECCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             405776651454136787776653156610013115677652047888605414689999988765433321024


No 87 
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=94.93  E-value=0.26  Score=27.79  Aligned_cols=63  Identities=21%  Similarity=0.182  Sum_probs=43.2

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEE
Q ss_conf             9999828786688999899736996322774214789818999994788998999998649882999
Q 537021.9.peg.3   26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFV   92 (100)
Q Consensus        26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~v   92 (100)
                      +-+.-+|+||-++.+.+.|.++||||-++.+.-  .|+..+.-+-+  +-|++.-..+++---+.+.
T Consensus         6 ISvFlENk~GRL~~~~~~L~eagINiRA~tiAd--t~dFGIiRmvV--~~~d~A~~~Lee~gF~Vr~   68 (142)
T COG4747           6 ISVFLENKPGRLASVANKLKEAGINIRAFTIAD--TGDFGIIRMVV--DRPDEAHSVLEEAGFTVRE   68 (142)
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECC--CCCCCEEEEEC--CCHHHHHHHHHHCCCEEEE
T ss_conf             998750786449999999997698658887303--66753699970--8858999999877938986


No 88 
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=94.69  E-value=0.041  Score=32.01  Aligned_cols=56  Identities=21%  Similarity=0.253  Sum_probs=39.0

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf             999998287866889998997369963227742147898189999947889989999986
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS   84 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~   84 (100)
                      .+.+.-.|+||+++.++..++++++||..-++.+-.  +..-+++-+.++  .+.+.+++
T Consensus         3 vit~iG~DrpGiv~~vs~~v~~~gcNi~dSrmt~lg--~~Fa~imlvsG~--w~~ia~lE   58 (77)
T cd04893           3 VISALGTDRPGILNELTRAVSESGCNILDSRMAILG--TEFALTMLVEGS--WDAIAKLE   58 (77)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHCCCCEEHHHHHHHH--CCEEEEEEEECC--HHHHHHHH
T ss_conf             999962898659999999999869987243788873--603899999528--88999999


No 89 
>PRK03059 PII uridylyl-transferase; Provisional
Probab=94.09  E-value=0.35  Score=27.11  Aligned_cols=66  Identities=15%  Similarity=0.251  Sum_probs=49.7

Q ss_pred             EEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECC-CC-CHHHHHHHHC
Q ss_conf             76579839999982878668899989973699632277421478981899999478-89-9899999864
Q 537021.9.peg.3   18 DVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDG-SI-LNSVLEKLSV   85 (100)
Q Consensus        18 ~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~-~i-~~~vl~~i~~   85 (100)
                      +.+...+.+=+.-.|+||.++.|+.+|.+.+++|.+-..  .+.|+.+.-+.=+++ ++ +++.+++|++
T Consensus       782 ~~s~~~TvlEV~a~DrpGLL~~I~~~l~~~~l~I~~AkI--~T~Gerv~DvFyV~g~ki~d~~~~~~i~~  849 (857)
T PRK03059        782 DERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKI--NTLGERVEDVFLLDGAGLSDNRLQIQLET  849 (857)
T ss_pred             CCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE--CCCCCEEEEEEEECCCCCCCHHHHHHHHH
T ss_conf             798874899999588177999999999988977989896--36476189999985998899899999999


No 90 
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=94.05  E-value=0.49  Score=26.34  Aligned_cols=66  Identities=15%  Similarity=0.278  Sum_probs=49.8

Q ss_pred             EEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCC-HHHHHHHHC
Q ss_conf             765798399999828786688999899736996322774214789818999994----78899-899999864
Q 537021.9.peg.3   18 DVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSIL-NSVLEKLSV   85 (100)
Q Consensus        18 ~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~-~~vl~~i~~   85 (100)
                      +.+...+.+=+.-.|+||.++.|+.+|++.|++|.+-..  .+.|+.|.-+.=+    ..+++ ++.+++|++
T Consensus       809 ~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI--~T~Gerv~DvFyVtd~~g~kl~d~~~~~~l~~  879 (894)
T PRK00275        809 DAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKI--ATLGERVEDVFFITDADGQPLSDPQLCSRLQQ  879 (894)
T ss_pred             CCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE--CCCCCEEEEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf             898884899999588076999999999988987988896--35476089999996799996899999999999


No 91 
>TIGR01693 UTase_glnD protein-P-II uridylyltransferase; InterPro: IPR010043   This entry describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for signal-transduction protein PII, and acts as the sensory component of the nitrogen regulation (ntr) system . The ntr system modulates nitrogen metabolism in response to the prevailing nitrogen source and the requirements of the cell. During nitrogen fixation, ammonia and 2-oxoglutarate can be used to produce glutamate. The activity of the PII protein is stimulated by glutamine and inhibited by 2-oxoglutarate. Under glutamate-limiting conditions, PII is uridylylated by GlnD leading to the activation of glutamate synthetase and to the stimulation of NtrC-dependent promoters. Under high concentrations of fixed nitrogen, PII is de-uridylylated leading to the inactivation of the glutamate synthetase pathway and switching off NtrC-dependent promoters .   Not all homologues of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see IPR002332 from INTERPRO), but the modification site is preserved in the PII homologue of all species with a member of this family. ; GO: 0008773 [protein-PII] uridylyltransferase activity, 0006807 nitrogen compound metabolic process.
Probab=93.86  E-value=0.35  Score=27.10  Aligned_cols=31  Identities=16%  Similarity=0.290  Sum_probs=15.6

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             9999828786688999899736996322774
Q 537021.9.peg.3   26 ICIVNADILGIVVFVGNILGEYGINIAHFHL   56 (100)
Q Consensus        26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l   56 (100)
                      ++|.-+|+||.++.|...|+.+++||.+-++
T Consensus       707 ~~I~~~D~~~L~~~~a~~la~~~~~v~~A~~  737 (903)
T TIGR01693       707 VFIYAPDQPGLFAKVAAALAALSLSVHDAQV  737 (903)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             8885088301589999999625881642257


No 92 
>PRK03381 PII uridylyl-transferase; Provisional
Probab=93.80  E-value=0.55  Score=26.07  Aligned_cols=66  Identities=11%  Similarity=0.194  Sum_probs=49.3

Q ss_pred             EEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHHHC
Q ss_conf             765798399999828786688999899736996322774214789818999994----78899899999864
Q 537021.9.peg.3   18 DVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKLSV   85 (100)
Q Consensus        18 ~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i~~   85 (100)
                      +.+.....|=+.-.|+||.++.|+.+|.+.|++|..-.+  .+.|+.|.-++-+    .++++++-.++|++
T Consensus       704 ~~s~~~TvlEV~a~DRpGLL~~Ia~~l~~~gl~I~~AkI--~T~Gerv~DvFyVtd~~g~kl~d~~~~~l~~  773 (781)
T PRK03381        704 TASPDATVLEVRAADRAGLLARLTRALEGAGVDVRWAKV--NTLGSDAVDAFYVTEAAGGPLADARRAAVER  773 (781)
T ss_pred             CCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE--CCCCCCEEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf             888885899999688177999999999987987988796--2688608999999779989099899999999


No 93 
>PRK05092 PII uridylyl-transferase; Provisional
Probab=93.78  E-value=0.55  Score=26.05  Aligned_cols=64  Identities=17%  Similarity=0.191  Sum_probs=47.6

Q ss_pred             ECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCC-HHHHHHHHC
Q ss_conf             5798399999828786688999899736996322774214789818999994----78899-899999864
Q 537021.9.peg.3   20 DIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSIL-NSVLEKLSV   85 (100)
Q Consensus        20 ~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~-~~vl~~i~~   85 (100)
                      +...+.|=+.-.|+||.+..|+.+|++.|++|.+-..  .+-|+.|.-+.=+    ..+++ ++-+++|++
T Consensus       843 S~~~TviEV~a~DRPGLL~~I~~~l~~~~l~I~sAkI--aT~Gerv~DvFyVtd~~G~ki~d~~~~~~l~~  911 (934)
T PRK05092        843 SNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHI--ATYGERAVDVFYVTDLFGLKITNPARQAAIRR  911 (934)
T ss_pred             CCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE--CCCCCEEEEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf             8875899999588078999999999988977999896--25576289999997899998899999999999


No 94 
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=93.43  E-value=0.18  Score=28.65  Aligned_cols=71  Identities=13%  Similarity=0.174  Sum_probs=60.5

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEE
Q ss_conf             9999982878668899989973699632277421478981899999478899899999864988299999997
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEF   97 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i~~   97 (100)
                      +|=+.-+|+-|..-.+-.+|+..+||.....+  +..|..-+..-+++-+.-++++.+|+.+|||..||.+.|
T Consensus         2 RleV~cedRlGltrelLdlLv~r~idl~~iEi--d~~~~IYln~p~l~~~~fs~L~aei~~I~GV~~vr~V~~   72 (511)
T COG3283           2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEI--DPIGRIYLNFPELEFESFSSLMAEIRRIPGVTDVRTVPW   72 (511)
T ss_pred             CEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEE--CCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf             26898523210089999998654657650452--477737885775688889999999836898552367447


No 95 
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=93.35  E-value=0.35  Score=27.11  Aligned_cols=68  Identities=18%  Similarity=0.106  Sum_probs=52.2

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC-CCE--EEEEEEEC-CCCCHHHHHHHHCCCCEEEEE
Q ss_conf             9999982878668899989973699632277421478-981--89999947-889989999986498829999
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS-TEH--AISFLCID-GSILNSVLEKLSVNVTIRFVK   93 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~-g~~--A~~ii~vD-~~i~~~vl~~i~~~~~v~~vr   93 (100)
                      +|-+.-+|+||-+-++-+-|++.|.||-+.--+|+++ |..  .-..++.| ++...++++.+ +..|+.=.|
T Consensus         7 tldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~-e~~Gi~I~~   78 (170)
T COG2061           7 TLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLL-EEEGIIIIR   78 (170)
T ss_pred             EEEEEECCCCCCHHHHHCCHHHCCCCEEEEEEECCCCCCCCEEEEEEEEECCCHHHHHHHHHH-HHCCCEEEE
T ss_conf             999994488712644432052348618999961374348940489999835627889999999-867948999


No 96 
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.29  E-value=0.27  Score=27.74  Aligned_cols=52  Identities=8%  Similarity=0.241  Sum_probs=38.0

Q ss_pred             EEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE
Q ss_conf             765798399999828786688999899736996322774214789818999994
Q 537021.9.peg.3   18 DVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI   71 (100)
Q Consensus        18 ~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v   71 (100)
                      +.+.+.+.+=+.-.|+||.++.++.+|++.+.+|.+-+.  .+-|+.|.-+.-+
T Consensus       786 t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkI--tT~GErveD~F~v  837 (867)
T COG2844         786 TASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKI--TTFGERVEDVFIV  837 (867)
T ss_pred             CCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEE--CCCCCCCEEEEEE
T ss_conf             657774489999678653799999998745564013253--0346531258999


No 97 
>TIGR00691 spoT_relA RelA/SpoT family protein; InterPro: IPR004811   The functions of Escherichia coli RelA and SpoT differ somewhat. RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homolog to SpoT and RelA appears responsible for both ppGpp synthesis and ppGpp degradation.     (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.  ; GO: 0015969 guanosine tetraphosphate metabolic process.
Probab=93.14  E-value=0.63  Score=25.78  Aligned_cols=71  Identities=17%  Similarity=0.147  Sum_probs=58.9

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC---HHHHHHHHCCCCEEEEEE
Q ss_conf             39999982878668899989973699632277421478981899999478899---899999864988299999
Q 537021.9.peg.3   24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL---NSVLEKLSVNVTIRFVKQ   94 (100)
Q Consensus        24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~---~~vl~~i~~~~~v~~vr~   94 (100)
                      +-+.+.-.|+-|+++.+.+.|++.++||.+......+.++.+.+-+.++-.=.   ..++.+|+..+++..+++
T Consensus       668 ~~I~~~~~~~~~~L~~l~~~i~~~~~ni~~~~~~~~K~~~~~~~~~~~~~~~~~~L~~i~~~ik~~~~v~~~~r  741 (741)
T TIGR00691       668 VEIQIEALDRKGVLSDLTTAISENDSNIVSISTETKKDKREAILNITVEIKDYKHLLKIMKKIKNVEDVIDVKR  741 (741)
T ss_pred             EEEEEEEEHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEEEEEECCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             89899861034689999999863872589700100258836899999986087999999998516887588509


No 98 
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=92.66  E-value=0.84  Score=25.09  Aligned_cols=62  Identities=13%  Similarity=0.082  Sum_probs=49.0

Q ss_pred             CCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC-HHHHHHHHCCCCEEEEEE
Q ss_conf             78668899989973699632277421478981899999478899-899999864988299999
Q 537021.9.peg.3   33 ILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL-NSVLEKLSVNVTIRFVKQ   94 (100)
Q Consensus        33 ~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~-~~vl~~i~~~~~v~~vr~   94 (100)
                      .|+-+..+...|.++++.|.+.++.++.....-.+.+.+.+..+ +++++.|+++|+|.+|..
T Consensus       152 ~~~~~~~i~~~l~~~~i~i~~v~i~~~~~~~~v~l~v~~~~~~~~~dl~~~L~~i~gV~~V~i  214 (215)
T PRK09977        152 VNGNTVSMLDWFKQQKIKTDLVSLQENEDHEVVTIDITLHATTSIEDLLRLLKGMAGVKGVSI  214 (215)
T ss_pred             ECCCHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEC
T ss_conf             358277999999984975899998982888589999997798749999999855999358840


No 99 
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.30  E-value=0.6  Score=25.86  Aligned_cols=62  Identities=21%  Similarity=0.244  Sum_probs=43.7

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCEEEEEEECCC-CCCEEEEEEEE---CCCCCHHHHHHHHCCCCE
Q ss_conf             998287866889998997369963227742147-89818999994---788998999998649882
Q 537021.9.peg.3   28 IVNADILGIVVFVGNILGEYGINIAHFHLGRSQ-STEHAISFLCI---DGSILNSVLEKLSVNVTI   89 (100)
Q Consensus        28 i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~-~g~~A~~ii~v---D~~i~~~vl~~i~~~~~v   89 (100)
                      +.=+|+||-+..|...|.+++.||.+.-.+... ..|.--..|.+   |..--+++.++|++.-.+
T Consensus         4 f~L~d~pGslk~v~D~Lr~~~~rI~SILTs~~~~~~g~R~V~IRi~~mD~a~l~~l~e~L~~~~~l   69 (72)
T cd04884           4 FLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRSKENELIEELKAKFTV   69 (72)
T ss_pred             EECCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCE
T ss_conf             886899985279999998779859999833676899822899996356577799999999854557


No 100
>PRK08198 threonine dehydratase; Provisional
Probab=92.15  E-value=0.92  Score=24.89  Aligned_cols=65  Identities=15%  Similarity=0.136  Sum_probs=45.5

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CEEEEEEEEC---CCCCHHHHHHHHCC
Q ss_conf             98399999828786688999899736996322774214789---8189999947---88998999998649
Q 537021.9.peg.3   22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST---EHAISFLCID---GSILNSVLEKLSVN   86 (100)
Q Consensus        22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g---~~A~~ii~vD---~~i~~~vl~~i~~~   86 (100)
                      -...+.+.-.|+||.+.++.+++++.+.||-..+-.|....   +.+...+.+.   .+=-++++++|++.
T Consensus       328 r~~~~~v~i~d~PG~l~~~~~~i~~~~anI~~i~h~R~~~~~~~~~~~v~~~iEt~~~~h~~~i~~~L~~~  398 (406)
T PRK08198        328 RYLKLRVELPDRPGQLAKLLSIIAELRANVIDVDHDRFSPGLRLGEVEVELTLETRGPEHIDEILAALRDA  398 (406)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHC
T ss_conf             97999998278996799999999757993799998872577886648999999929999999999999978


No 101
>PRK07431 aspartate kinase; Provisional
Probab=91.80  E-value=0.23  Score=28.04  Aligned_cols=57  Identities=18%  Similarity=0.117  Sum_probs=30.5

Q ss_pred             EECCCCCHHHHHHHHHHHCCCCEEEEEEE--CCCCCCEEEEEEEECCCCCHHHHHHHHC
Q ss_conf             98287866889998997369963227742--1478981899999478899899999864
Q 537021.9.peg.3   29 VNADILGIVVFVGNILGEYGINIAHFHLG--RSQSTEHAISFLCIDGSILNSVLEKLSV   85 (100)
Q Consensus        29 ~~~D~PG~I~~v~~~L~~~~INIa~m~l~--r~~~g~~A~~ii~vD~~i~~~vl~~i~~   85 (100)
                      .-.|+||+.+++-+.|++++||+.-..-+  ........+++-+-|-+-..++++++..
T Consensus       277 gv~~~pG~aa~iF~~La~~~InVDmI~Q~~~~~~~~disftv~~~dl~~a~~vl~~~~~  335 (594)
T PRK07431        277 RVPDRPGIAAQLFEELAAQGVNVDLIIQSTHEGNSNDIAFTVAEAELKKAEAVCEAILP  335 (594)
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf             68998658999999999739755899862367997635897148789999999999987


No 102
>TIGR01127 ilvA_1Cterm threonine dehydratase; InterPro: IPR005789    Serine and threonine dehydratases ,  are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown  that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue.    A form of threonine dehydratase with two copies of the C-terminal domain  is described by . This model describes a phylogenetically distinct which branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any  domain. Many members of this model are found in species with other isoleucine biosynthetic enzymes.; GO: 0004794 L-threonine ammonia-lyase activity.
Probab=91.76  E-value=1.1  Score=24.49  Aligned_cols=61  Identities=18%  Similarity=0.098  Sum_probs=45.6

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC---CCEEEEEEEECCCCCHHHHHHHHC
Q ss_conf             39999982878668899989973699632277421478---981899999478899899999864
Q 537021.9.peg.3   24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS---TEHAISFLCIDGSILNSVLEKLSV   85 (100)
Q Consensus        24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~---g~~A~~ii~vD~~i~~~vl~~i~~   85 (100)
                      -.+-..=.|+||-|-++...+++.+.||-....-|..+   -|.|...+++ +-..++.+++|++
T Consensus       307 v~I~~~~~D~PG~L~~ll~~~A~~~aNi~~i~hDR~~~~~~~G~a~v~~~L-Et~g~~H~~ei~~  370 (381)
T TIGR01127       307 VRIETVIPDRPGALYKLLEVIAEERANIVKIEHDRLSKEIPPGFAKVELEL-ETRGKEHLDEILK  370 (381)
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEE-EECCHHHHHHHHH
T ss_conf             999999823898669999999981697899997375777786753899998-4088689999999


No 103
>PRK06382 threonine dehydratase; Provisional
Probab=91.63  E-value=0.52  Score=26.20  Aligned_cols=67  Identities=16%  Similarity=0.076  Sum_probs=44.8

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CEE--EEEEEE-CCCCCHHHHHHHHCCC
Q ss_conf             798399999828786688999899736996322774214789---818--999994-7889989999986498
Q 537021.9.peg.3   21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST---EHA--ISFLCI-DGSILNSVLEKLSVNV   87 (100)
Q Consensus        21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g---~~A--~~ii~v-D~~i~~~vl~~i~~~~   87 (100)
                      .-...+.+.-.|+||.++++.+++++.+.||-..+..|....   +.+  ...+++ |.+=-++++++|++.-
T Consensus       322 gr~~~~~v~i~d~pG~L~~~~~~i~~~~~ni~~i~~~r~~~~~~~~~~~v~~~iEt~~~~h~~~i~~~l~~~G  394 (400)
T PRK06382        322 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALREMG  394 (400)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHCC
T ss_conf             9979999986889977999999970689957999987602557876268999998099999999999999878


No 104
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.77  E-value=0.53  Score=26.15  Aligned_cols=44  Identities=18%  Similarity=0.094  Sum_probs=30.1

Q ss_pred             EECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECC
Q ss_conf             982878668899989973699632277421478981899999478
Q 537021.9.peg.3   29 VNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDG   73 (100)
Q Consensus        29 ~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~   73 (100)
                      .=.|+||+.+++-+.|++++|||.-..-+.. .++.+-....+.+
T Consensus         7 ~vpd~pg~aa~iF~~LA~~~InVDmIvQ~~~-~~~~~~isFTv~~   50 (61)
T cd04891           7 GVPDKPGVAAKIFSALAEAGINVDMIVQSVS-RGGTTDISFTVPK   50 (61)
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCEEEEEECCC-CCCCCEEEEEECH
T ss_conf             8999975799999999985981799986588-8995218998249


No 105
>TIGR01693 UTase_glnD protein-P-II uridylyltransferase; InterPro: IPR010043   This entry describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for signal-transduction protein PII, and acts as the sensory component of the nitrogen regulation (ntr) system . The ntr system modulates nitrogen metabolism in response to the prevailing nitrogen source and the requirements of the cell. During nitrogen fixation, ammonia and 2-oxoglutarate can be used to produce glutamate. The activity of the PII protein is stimulated by glutamine and inhibited by 2-oxoglutarate. Under glutamate-limiting conditions, PII is uridylylated by GlnD leading to the activation of glutamate synthetase and to the stimulation of NtrC-dependent promoters. Under high concentrations of fixed nitrogen, PII is de-uridylylated leading to the inactivation of the glutamate synthetase pathway and switching off NtrC-dependent promoters .   Not all homologues of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see IPR002332 from INTERPRO), but the modification site is preserved in the PII homologue of all species with a member of this family. ; GO: 0008773 [protein-PII] uridylyltransferase activity, 0006807 nitrogen compound metabolic process.
Probab=90.60  E-value=0.8  Score=25.20  Aligned_cols=64  Identities=17%  Similarity=0.267  Sum_probs=48.3

Q ss_pred             EECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECC----CCCH-HHHHHHH
Q ss_conf             6579839999982878668899989973699632277421478981899999478----8998-9999986
Q 537021.9.peg.3   19 VDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDG----SILN-SVLEKLS   84 (100)
Q Consensus        19 ~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~----~i~~-~vl~~i~   84 (100)
                      .+.....+=+.-.|+||.++.||.+|.+.+.+|.+-++  .+-|+.|.=+.-|-.    ++.+ +..+.|+
T Consensus       827 as~~~T~~E~~a~DrpGLL~~v~~~l~~~~l~i~~AkI--~T~GE~A~D~Fyvt~~~g~~l~~~~~~~~L~  895 (903)
T TIGR01693       827 ASKKATVMEVRALDRPGLLAAVGKTLEELGLSIQSAKI--TTLGEKAEDVFYVTDLFGLKLNDEEEEQRLE  895 (903)
T ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEE--ECCCCCEEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf             15454488886378646289999998750675343456--0546645887764054575220278862389


No 106
>PRK08526 threonine dehydratase; Provisional
Probab=89.54  E-value=1.8  Score=23.37  Aligned_cols=65  Identities=14%  Similarity=0.109  Sum_probs=45.3

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CEEEEEE--EEC-CCCCHHHHHHHHC
Q ss_conf             798399999828786688999899736996322774214789---8189999--947-8899899999864
Q 537021.9.peg.3   21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST---EHAISFL--CID-GSILNSVLEKLSV   85 (100)
Q Consensus        21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g---~~A~~ii--~vD-~~i~~~vl~~i~~   85 (100)
                      +-...+.+.-.|+||.++++.+++++.+.||-..+-.|....   +.+...+  ++- .+=-++++++|++
T Consensus       324 gr~~~~~v~~~d~pG~l~~~~~~i~~~~~ni~~~~~~r~~~~~~~~~~~v~~~~Et~~~~h~~~l~~~l~~  394 (403)
T PRK08526        324 YRKMKLHVTLVDKPGALMGLTDILKIANANIVKIDYDRFSTKLDYGDANISITLETKGKEHQEEIRKILTE  394 (403)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHH
T ss_conf             99899999868899679999999725899579999886257788773699999994999999999999998


No 107
>PRK07334 threonine dehydratase; Provisional
Probab=89.26  E-value=1.9  Score=23.26  Aligned_cols=65  Identities=26%  Similarity=0.260  Sum_probs=45.0

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CEEEEEEEE---CCCCCHHHHHHHHCC
Q ss_conf             98399999828786688999899736996322774214789---818999994---788998999998649
Q 537021.9.peg.3   22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST---EHAISFLCI---DGSILNSVLEKLSVN   86 (100)
Q Consensus        22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g---~~A~~ii~v---D~~i~~~vl~~i~~~   86 (100)
                      -...+.+.-.|+||.+.++.+++++.+.||-..+-.|....   +.+...+.+   |.+=-++++++|++-
T Consensus       322 r~~~~~v~ipd~PG~l~~~~~~i~~~~ani~~i~h~r~~~~~~~~~~~v~~~~Et~~~~h~~~l~~~L~~~  392 (399)
T PRK07334        322 RLARLRVDIRDRPGALAKVTALIGEAGANIIEVHHQRLFTTLPAKGAELELVIETRDAAHIQEVMAALRAA  392 (399)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHC
T ss_conf             98999998888996799999998217997699998871577887738999999939999999999999977


No 108
>PRK07431 aspartate kinase; Provisional
Probab=88.18  E-value=0.79  Score=25.23  Aligned_cols=74  Identities=12%  Similarity=0.105  Sum_probs=47.8

Q ss_pred             CEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEC-------CCCCCEEEEEEEECCCCCHHHHHHHHCC
Q ss_conf             989976579839999982878668899989973699632277421-------4789818999994788998999998649
Q 537021.9.peg.3   14 EINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGR-------SQSTEHAISFLCIDGSILNSVLEKLSVN   86 (100)
Q Consensus        14 g~~v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r-------~~~g~~A~~ii~vD~~i~~~vl~~i~~~   86 (100)
                      |+.+|-. +-..-+..=.|+||+-+++=..|++++||+.-. +..       .......+++-.-|-+-..++++++++-
T Consensus       432 Gva~d~~-qakiti~~vpD~PGiAa~iF~~la~~~inVDMI-vQn~~~~~~~~~~tdisFTv~~~d~~~a~~~l~~~~~~  509 (594)
T PRK07431        432 GVALDRN-QAQLSIRNVPDRPGMAASIFSALAEANISVDMI-VQSQRCRIDGVPTRDISFTVPKDDREAAQKALAPLAAK  509 (594)
T ss_pred             EEEECCC-CEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEE-EECCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             5660477-107997379999747999989998769727899-85675446899851189971588999999999999876


Q ss_pred             CCE
Q ss_conf             882
Q 537021.9.peg.3   87 VTI   89 (100)
Q Consensus        87 ~~v   89 (100)
                      -+.
T Consensus       510 ~~~  512 (594)
T PRK07431        510 LPG  512 (594)
T ss_pred             CCC
T ss_conf             598


No 109
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=87.80  E-value=1  Score=24.67  Aligned_cols=49  Identities=29%  Similarity=0.289  Sum_probs=33.3

Q ss_pred             ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf             8287866889998997369963227742147898189999947889989999986
Q 537021.9.peg.3   30 NADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS   84 (100)
Q Consensus        30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~   84 (100)
                      -.+.||+-+++-+.|+++||||....   .+  +..++++ +++.--+..++.|.
T Consensus        10 m~~~~Gvaarif~aL~~~~Ini~mIs---sS--E~~Is~v-V~~~~~~~Av~~Lh   58 (63)
T cd04936          10 MRSHPGVAAKMFEALAEAGINIEMIS---TS--EIKISCL-IDEDDAEKAVRALH   58 (63)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCEEEEE---CC--CCEEEEE-ECHHHHHHHHHHHH
T ss_conf             47892299999999998799859998---35--6669999-82999999999999


No 110
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=87.68  E-value=1.3  Score=24.12  Aligned_cols=50  Identities=34%  Similarity=0.467  Sum_probs=32.4

Q ss_pred             ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHH
Q ss_conf             828786688999899736996322774214789818999994788998999998
Q 537021.9.peg.3   30 NADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKL   83 (100)
Q Consensus        30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i   83 (100)
                      -.++||+-+++-+.|++++|||--..   +...+..+++. +++.-.+..+..|
T Consensus        11 m~~~~GvaariF~~La~~~INI~mIs---Q~sSE~sIs~v-V~~~d~~~Av~aL   60 (80)
T cd04921          11 MVGVPGIAARIFSALARAGINVILIS---QASSEHSISFV-VDESDADKALEAL   60 (80)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCEEEEE---CCCCCCEEEEE-ECHHHHHHHHHHH
T ss_conf             68997489999999998799789997---37876569999-8189999999999


No 111
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes'  of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=86.66  E-value=0.86  Score=25.05  Aligned_cols=39  Identities=18%  Similarity=0.157  Sum_probs=29.2

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEE
Q ss_conf             998287866889998997369963227742147898189999
Q 537021.9.peg.3   28 IVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFL   69 (100)
Q Consensus        28 i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii   69 (100)
                      =.+...||++++-.+.|+++|||+-.++   +.....-+.++
T Consensus         9 G~~m~~~gvlar~~~AL~~~gInv~a~~---Q~~r~vnvqFV   47 (66)
T cd04915           9 GRDLSTPGVLARGLAALAEAGIEPIAAH---QSMRNVDVQFV   47 (66)
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCEEEEE---CCCCEEEEEEE
T ss_conf             5788744279999999998899789886---47850368999


No 112
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional  aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the  monofunctional,  threonine-sensitive, aspartokinase found  in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=86.65  E-value=0.98  Score=24.74  Aligned_cols=50  Identities=30%  Similarity=0.405  Sum_probs=32.8

Q ss_pred             CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf             287866889998997369963227742147898189999947889989999986
Q 537021.9.peg.3   31 ADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS   84 (100)
Q Consensus        31 ~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~   84 (100)
                      .+.||+.+++-+.|++++|||-...-+   ..+..+.++ +|+.--+.+++.|.
T Consensus        11 ~~~~gi~a~~f~~L~~~~Inv~~isq~---~se~~Is~v-V~~~d~~~av~~Lh   60 (65)
T cd04892          11 RGTPGVAARIFSALAEAGINIIMISQG---SSEVNISFV-VDEDDADKAVKALH   60 (65)
T ss_pred             CCCCCHHHHHHHHHHHCCCCEEEEEEC---CCCCEEEEE-EEHHHHHHHHHHHH
T ss_conf             778059999999999879987998835---863059999-84899999999999


No 113
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.36  E-value=1.1  Score=24.52  Aligned_cols=50  Identities=24%  Similarity=0.251  Sum_probs=33.3

Q ss_pred             ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHH
Q ss_conf             828786688999899736996322774214789818999994788998999998
Q 537021.9.peg.3   30 NADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKL   83 (100)
Q Consensus        30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i   83 (100)
                      -+.+||+-+++-+.|++++|||.-..   +...+..++++ +|+.-.+..+..|
T Consensus        11 M~~~~Gvaar~F~~La~~~INI~mIs---QGsSEinIs~v-V~~~d~~~Av~al   60 (66)
T cd04919          11 MKNMIGIAGRMFTTLADHRINIEMIS---QGASEINISCV-IDEKDAVKALNII   60 (66)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCEEEEE---CCCCEEEEEEE-EEHHHHHHHHHHH
T ss_conf             03596679999999998799879885---27860479999-8289999999999


No 114
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.85  E-value=1.2  Score=24.37  Aligned_cols=50  Identities=24%  Similarity=0.259  Sum_probs=33.3

Q ss_pred             CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf             287866889998997369963227742147898189999947889989999986
Q 537021.9.peg.3   31 ADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS   84 (100)
Q Consensus        31 ~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~   84 (100)
                      ...||+-+++-+.|++++|||.-..   +...+..++++ ++++-.+..++.|.
T Consensus        12 ~~~~GvaariF~aLa~~~INI~mIs---QgsSE~sIs~~-V~~~d~~~Av~alh   61 (66)
T cd04924          12 RGTPGVAGRVFGALGKAGINVIMIS---QGSSEYNISFV-VAEDDGWAAVKAVH   61 (66)
T ss_pred             CCCCCHHHHHHHHHHHCCCCEEEEE---CCCCCCEEEEE-ECHHHHHHHHHHHH
T ss_conf             7896779999999997799789997---37763079999-94899999999999


No 115
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.76  E-value=1.3  Score=24.02  Aligned_cols=51  Identities=18%  Similarity=0.238  Sum_probs=34.1

Q ss_pred             ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf             8287866889998997369963227742147898189999947889989999986
Q 537021.9.peg.3   30 NADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS   84 (100)
Q Consensus        30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~   84 (100)
                      ...+||+-+++-+.|++++|||.-..   +...+..+++. +++.--+..++.|.
T Consensus        11 M~~~~GvaariF~~L~~~~INI~mIs---QgsSE~~Is~~-V~~~d~~~Av~alh   61 (66)
T cd04916          11 MKNTVGVSARATAALAKAGINIRMIN---QGSSEISIMIG-VHNEDADKAVKAIY   61 (66)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCEEEEE---CCCCCCEEEEE-ECHHHHHHHHHHHH
T ss_conf             16793589999999998799889986---27761159999-81899999999999


No 116
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.28  E-value=1.9  Score=23.24  Aligned_cols=48  Identities=27%  Similarity=0.290  Sum_probs=31.5

Q ss_pred             ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHH
Q ss_conf             828786688999899736996322774214789818999994788998999998
Q 537021.9.peg.3   30 NADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKL   83 (100)
Q Consensus        30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i   83 (100)
                      -.++||+-+++-+.|+++||||....   .+  +..++++ +++.--+..+..|
T Consensus        10 m~~~~Gvaarif~aL~~~~Inv~~is---sS--E~~Is~v-V~~~d~~~Av~aL   57 (63)
T cd04923          10 MRSHPGVAAKMFKALAEAGINIEMIS---TS--EIKISCL-VDEDDAEKAVRAL   57 (63)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCEEEEE---CC--CCEEEEE-EEHHHHHHHHHHH
T ss_conf             47894399999999998799879998---25--6779999-8089999999999


No 117
>TIGR00657 asp_kinases aspartate kinase; InterPro: IPR001341   Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see .   Aspartate kinase (2.7.2.4 from EC) (AK) catalyzes the first reaction in the aspartate pathway; the phosphorylation of aspartate. The product of this reaction can then be used in the biosynthesis of lysine or in the pathway leading to homoserine, which participates in the biosynthesis of threonine, isoleucine and methionine .   In bacteria there are three different aspartate kinase isozymes which differ in sensitivity to repression and inhibition by Lys, Met and Thr. AK1 and AK2 are bifunctional enzymes which both consist of an N-terminal AK domain and a C-terminal homoserine dehydrogenase domain. AK1 is involved in threonine biosynthesis and AK2, in that of methionine. The third isozyme, AK3 is monofunctional and involved in lysine synthesis. In archaea and plants there may be a single isozyme of AK which in plants is multifunctional.   This entry represents a region encoding aspartate kinase activity found in both the monofunctional and bifunctional enzymes.   Synonym(s): Aspartokinase; GO: 0004072 aspartate kinase activity, 0008652 amino acid biosynthetic process.
Probab=84.18  E-value=3.5  Score=21.85  Aligned_cols=57  Identities=21%  Similarity=0.173  Sum_probs=33.4

Q ss_pred             EEEEECC--CCCHHHHHHHHHHHCC----CCEEEEE----EECC-CCCCEEEEEEEECCCC--CHHHHHH
Q ss_conf             9999828--7866889998997369----9632277----4214-7898189999947889--9899999
Q 537021.9.peg.3   26 ICIVNAD--ILGIVVFVGNILGEYG----INIAHFH----LGRS-QSTEHAISFLCIDGSI--LNSVLEK   82 (100)
Q Consensus        26 L~i~~~D--~PG~I~~v~~~L~~~~----INIa~m~----l~r~-~~g~~A~~ii~vD~~i--~~~vl~~   82 (100)
                      +.-....  .||++++|-++|++++    |||..+.    -+.. -..+..-.-+.+|.+-  -+...+.
T Consensus       342 v~g~~~~~~~~g~~~~vf~~l~~~~~~l~i~v~~I~~~y~Q~~~~~~~~~~di~f~v~~~~i~~~~a~~~  411 (504)
T TIGR00657       342 VSGLGMKGSMPGILAEVFGALAEAGHGLLINVDLISDKYKQSSSKIETSKTDISFTVDKEDIEADQAKEL  411 (504)
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCHHHHHHH
T ss_conf             8522678751027889999986237942632134675303556764015305999962535776899999


No 118
>PRK06635 aspartate kinase; Reviewed
Probab=84.06  E-value=1.4  Score=23.94  Aligned_cols=61  Identities=16%  Similarity=0.085  Sum_probs=37.1

Q ss_pred             EECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC--EEEEEEEECCCCCHHHHHHHHCCCCE
Q ss_conf             98287866889998997369963227742147898--18999994788998999998649882
Q 537021.9.peg.3   29 VNADILGIVVFVGNILGEYGINIAHFHLGRSQSTE--HAISFLCIDGSILNSVLEKLSVNVTI   89 (100)
Q Consensus        29 ~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~--~A~~ii~vD~~i~~~vl~~i~~~~~v   89 (100)
                      ...++||+.+++-+.|++++|||.-...+-...+.  ..+.+-.-|.+-..++++++.+-...
T Consensus       268 ~~~~~~G~~~~vf~~l~~~~i~vd~Isq~~s~~~~~~is~~v~~~d~~~~~~~l~~~~~~~~~  330 (402)
T PRK06635        268 GVPDKPGIAAQIFGPLADANINVDMIVQNVSEDGKTDLTFTVPRSDLEKALELLEEVKDEIGA  330 (402)
T ss_pred             CCCCCCCHHHHHHHHHHHCCEEEEEEEEECCCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCC
T ss_conf             478866689999888874353678999712789960189996388899999999999974698


No 119
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=82.85  E-value=4.2  Score=21.40  Aligned_cols=58  Identities=14%  Similarity=0.154  Sum_probs=39.2

Q ss_pred             EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC---------CCEEEEEEEECCCCCH--HHHHHHHCC
Q ss_conf             99982878668899989973699632277421478---------9818999994788998--999998649
Q 537021.9.peg.3   27 CIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS---------TEHAISFLCIDGSILN--SVLEKLSVN   86 (100)
Q Consensus        27 ~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~---------g~~A~~ii~vD~~i~~--~vl~~i~~~   86 (100)
                      ++-.+=.|..|+.|+..++++|.||...+  |-+.         ...|..-+.+-+++.+  .+-.++.++
T Consensus         4 lLgr~lta~~la~Vs~~ia~~glNID~I~--RLSgr~~l~~~~~~p~aciE~svrG~~~d~~~lr~~l~~l   72 (84)
T cd04871           4 LLGRPLTAEQLAAVTRVVADQGLNIDRIR--RLSGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLEL   72 (84)
T ss_pred             EECCCCCHHHHHHHHHHHHHCCCCEEEEE--ECCCCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHH
T ss_conf             96597999999999999997699966786--1557765545678960899999980578889999999998


No 120
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=82.69  E-value=4.3  Score=21.36  Aligned_cols=76  Identities=11%  Similarity=0.044  Sum_probs=63.2

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHH-HHHHCCCCEEEEEEEEEE
Q ss_conf             8399999828786688999899736996322774214789818999994788998999-998649882999999974
Q 537021.9.peg.3   23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVL-EKLSVNVTIRFVKQFEFN   98 (100)
Q Consensus        23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl-~~i~~~~~v~~vr~i~~~   98 (100)
                      .|.|-+.-+++|+.+-+|-.+.-..|.-+-+|+.+....++.+-.-+.+|++=|.++| ..|+++=+|..|.....+
T Consensus         3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~R~~~lL~~QLeKl~Dv~~V~i~~~~   79 (86)
T COG3978           3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSDRSVDLLTSQLEKLYDVAHVEITQSE   79 (86)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECC
T ss_conf             48982461679589999998865157599985253112366305999985898868999999877112158987304


No 121
>pfam07881 Fucose_iso_N1 L-fucose isomerase, first N-terminal domain. The members of this family are similar to L-fucose isomerase expressed by E. coli (EC:5.3.1.3). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues.
Probab=82.04  E-value=3.8  Score=21.64  Aligned_cols=66  Identities=21%  Similarity=0.203  Sum_probs=43.5

Q ss_pred             CEEEEEECC--CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHC
Q ss_conf             989976579--839999982878668899989973699632277421478981899999478899899999864
Q 537021.9.peg.3   14 EINFDVDIG--RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSV   85 (100)
Q Consensus        14 g~~v~~~~~--~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~   85 (100)
                      .+.+++.|.  ++.+.+.+.++||+++-.+..=+-.+.-+-.+...-+...+      --|..+|++++++|..
T Consensus        91 ~eTmdm~~~~pkavwgfngterPGaVylaAa~aa~~Q~Glpaf~IyG~~vQd------~~D~~iP~dV~eKlLr  158 (171)
T pfam07881        91 SETMDMDPFAPKAIWGFNGTERPGAVYLAAALAAHAQKGIPAFRIYGHDVQD------ADDTSIPEDVLEKLLR  158 (171)
T ss_pred             CEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCC------CCCCCCCHHHHHHHHH
T ss_conf             4114526678776786358878729999998777752586220114643446------7767472889999999


No 122
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second  of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=81.58  E-value=2.4  Score=22.74  Aligned_cols=50  Identities=24%  Similarity=0.242  Sum_probs=32.4

Q ss_pred             ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHH
Q ss_conf             828786688999899736996322774214789818999994788998999998
Q 537021.9.peg.3   30 NADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKL   83 (100)
Q Consensus        30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i   83 (100)
                      -...||+-+++-+.|++++|||.-..   +...+..++++ +++.-.+..++.|
T Consensus        11 M~~~~Gvaar~F~aL~~~~INi~mIs---QgsSE~sIs~~-V~~~d~~~Av~~l   60 (66)
T cd04922          11 MAGTPGVAATFFSALAKANVNIRAIA---QGSSERNISAV-IDEDDATKALRAV   60 (66)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCEEEEE---CCCCCCEEEEE-EEHHHHHHHHHHH
T ss_conf             67895779999999998899789996---48873279999-8089999999999


No 123
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=81.15  E-value=1.8  Score=23.33  Aligned_cols=26  Identities=19%  Similarity=0.263  Sum_probs=22.8

Q ss_pred             ECCCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf             82878668899989973699632277
Q 537021.9.peg.3   30 NADILGIVVFVGNILGEYGINIAHFH   55 (100)
Q Consensus        30 ~~D~PG~I~~v~~~L~~~~INIa~m~   55 (100)
                      -...||+-+++-+.|++.||||....
T Consensus        11 M~~~pGVaa~~f~aL~~~~InI~~is   36 (64)
T cd04937          11 IRGVPGVMAKIVGALSKEGIEILQTA   36 (64)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf             77885299999999997899579997


No 124
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=80.65  E-value=5  Score=21.02  Aligned_cols=49  Identities=24%  Similarity=0.230  Sum_probs=31.4

Q ss_pred             CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf             87866889998997369963227742147898189999947889989999986
Q 537021.9.peg.3   32 DILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS   84 (100)
Q Consensus        32 D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~   84 (100)
                      ..||+.++|-++|++++||+..+.-+-... +   +.+.+++...+..++.+.
T Consensus       319 ~~~g~~a~if~~l~~~~i~v~~I~q~~~~~-~---i~~~v~~~~~~~a~~~l~  367 (447)
T COG0527         319 GMVGFAARVFGILAEAGINVDLITQSISEV-S---ISFTVPESDAPRALRALL  367 (447)
T ss_pred             CCCCHHHHHHHHHHHCCCCEEEEEECCCCC-E---EEEEECHHHHHHHHHHHH
T ss_conf             652479999999997599679999236787-5---999973445789999999


No 125
>PRK08639 threonine dehydratase; Validated
Probab=79.05  E-value=5.8  Score=20.67  Aligned_cols=65  Identities=6%  Similarity=-0.011  Sum_probs=44.9

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCC-CHHHHHHHHCC
Q ss_conf             98399999828786688999899736996322774214789--8189999947889-98999998649
Q 537021.9.peg.3   22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSI-LNSVLEKLSVN   86 (100)
Q Consensus        22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i-~~~vl~~i~~~   86 (100)
                      -.+.+.++-.|+||.+.++.+.+...+-||-.++-.|....  +.+++-+++.++- -+++++++++.
T Consensus       333 r~~~~~v~~pd~PG~l~~f~~~~lg~~~~It~f~y~r~~~~~~~~v~vgie~~~~~~~~~l~~~l~~~  400 (418)
T PRK08639        333 LKHYFIVNFPQRPGALREFLDDVLGPDDDITRFEYLKKNNRETGPVLIGIELKDAEDYDGLLARMEAF  400 (418)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHHC
T ss_conf             86999997899997699999997299985689987862688704599999959877899999999977


No 126
>PRK09436 thrA bifunctional aspartokinase I/homeserine dehydrogenase I; Provisional
Probab=78.23  E-value=6.2  Score=20.53  Aligned_cols=26  Identities=19%  Similarity=0.258  Sum_probs=21.5

Q ss_pred             ECCCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf             82878668899989973699632277
Q 537021.9.peg.3   30 NADILGIVVFVGNILGEYGINIAHFH   55 (100)
Q Consensus        30 ~~D~PG~I~~v~~~L~~~~INIa~m~   55 (100)
                      ..++||+.+++-+.|++++|||.-..
T Consensus       325 m~g~~G~a~riF~~L~~~~InV~lIs  350 (817)
T PRK09436        325 MKGMVGMASRVFAALSRAGISVVLIT  350 (817)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf             78851089999999998699779985


No 127
>PRK09034 aspartate kinase; Reviewed
Probab=76.09  E-value=6.5  Score=20.42  Aligned_cols=54  Identities=13%  Similarity=0.131  Sum_probs=34.8

Q ss_pred             ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEE--ECCCCCHHHHHHHHCC
Q ss_conf             82878668899989973699632277421478981899999--4788998999998649
Q 537021.9.peg.3   30 NADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLC--IDGSILNSVLEKLSVN   86 (100)
Q Consensus        30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~--vD~~i~~~vl~~i~~~   86 (100)
                      -...||+.+++-++|++++||+..+..   +.....+.+-.  .+.+..+++++++++.
T Consensus       318 m~~~~g~~~~if~~l~~~~isv~~i~t---s~~~is~~v~~~~~~~~~~~~~~~el~~~  373 (450)
T PRK09034        318 MNREVGFGRKILQILEDHNISYEHMPS---GIDDLSIIIREKQLTNEKEDEILNEIKQE  373 (450)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCEEEEEC---CCCEEEEEECHHHCCHHHHHHHHHHHHHH
T ss_conf             677514899999999982994886523---77548999723330389999999999865


No 128
>PRK09181 aspartate kinase; Validated
Probab=75.34  E-value=4.9  Score=21.06  Aligned_cols=50  Identities=16%  Similarity=0.064  Sum_probs=34.1

Q ss_pred             CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHC
Q ss_conf             878668899989973699632277421478981899999478899899999864
Q 537021.9.peg.3   32 DILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSV   85 (100)
Q Consensus        32 D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~   85 (100)
                      ..||+.+++-++|++++||+..+..   +... -...+..|....++++++|++
T Consensus       342 ~~~g~~~~if~~l~~~~I~v~~~~s---s~~s-isi~~~~~~~~~~~~~~~l~~  391 (476)
T PRK09181        342 GEDGYDAEIMEILTRHKVRYISKDT---NANT-ITHYLSGSLKSLKRVLADLEK  391 (476)
T ss_pred             CCCCHHHHHHHHHHHCCCCEEEECC---CCCE-EEEEECCCHHHHHHHHHHHHH
T ss_conf             8858899999999975996898525---7763-899946999999999999986


No 129
>PRK08210 aspartate kinase I; Reviewed
Probab=73.50  E-value=5  Score=21.03  Aligned_cols=51  Identities=18%  Similarity=0.129  Sum_probs=32.3

Q ss_pred             ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCC
Q ss_conf             828786688999899736996322774214789818999994788998999998649
Q 537021.9.peg.3   30 NADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVN   86 (100)
Q Consensus        30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~   86 (100)
                      ..+.||+.+++-+.|++++|||.....+   ..+..++   ++....+.+.+.++++
T Consensus       279 ~~~~~g~~~~if~~la~~~IsVd~Is~s---~~~i~ft---v~~~d~~~~~~il~el  329 (405)
T PRK08210        279 KENAYDLQQEVFKALAEAGISVDLINIF---PTEVVFT---VSDEDSEKAKEILEEL  329 (405)
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEEEC---CCCEEEE---ECHHHHHHHHHHHHHC
T ss_conf             8996168999999999849817999933---4767999---7589999999999974


No 130
>PRK08841 aspartate kinase; Validated
Probab=73.13  E-value=8.6  Score=19.78  Aligned_cols=55  Identities=16%  Similarity=0.287  Sum_probs=37.1

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf             3999998287866889998997369963227742147898189999947889989999986
Q 537021.9.peg.3   24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS   84 (100)
Q Consensus        24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~   84 (100)
                      -.+-+.-.+.||+.+++-+.|++.||||....   +  .+..++++ +|+.-.+..+..|.
T Consensus       319 a~VsvVG~~~~Gva~~~f~aLa~~~InI~~is---~--SEinIS~v-V~~~d~~kAv~aLH  373 (392)
T PRK08841        319 SLLTLVGLEANGMVDHACNQLAQQGIDVHQCS---T--EPLSSMLV-VDPANVDRAANILH  373 (392)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEE---E--CCCEEEEE-ECHHHHHHHHHHHH
T ss_conf             49999889985599999999997899879998---0--35789999-84999999999999


No 131
>PRK09084 aspartate kinase III; Validated
Probab=72.79  E-value=8.7  Score=19.74  Aligned_cols=57  Identities=14%  Similarity=0.135  Sum_probs=36.1

Q ss_pred             CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEC------CCCCHHHHHHHHCCCCEE
Q ss_conf             287866889998997369963227742147898189999947------889989999986498829
Q 537021.9.peg.3   31 ADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCID------GSILNSVLEKLSVNVTIR   90 (100)
Q Consensus        31 ~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD------~~i~~~vl~~i~~~~~v~   90 (100)
                      .++||+++++-+.|++++|||..+..+   ....++.+-..+      ....+++++++++...+.
T Consensus       317 ~~~~G~~~~if~~l~~~~I~vd~i~ss---e~sis~~i~~~~~~~~~~~~~~~~~~~el~~~~~v~  379 (447)
T PRK09084        317 LHAHGFLAEVFGILARHKISVDLITTS---EVSVSLTLDTTGSTSTGDTLLTQALLMELSQLCRVE  379 (447)
T ss_pred             CCCCCHHHHHHHHHHHCCCCEEEEECC---CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             632018999999999759927999804---653789970411455566899999999875048489


No 132
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.92  E-value=9.7  Score=19.50  Aligned_cols=63  Identities=10%  Similarity=0.061  Sum_probs=41.9

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC-EEEEEEEECC--CCCHHHHHHHHCC
Q ss_conf             3999998287866889998997369963227742147898-1899999478--8998999998649
Q 537021.9.peg.3   24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTE-HAISFLCIDG--SILNSVLEKLSVN   86 (100)
Q Consensus        24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~-~A~~ii~vD~--~i~~~vl~~i~~~   86 (100)
                      -+|++.-+|.+|-++++..++-++++|+........++.+ ..=.++++|.  .--..++..|++.
T Consensus        42 ~~llFsLk~~~gsL~r~LkvFe~~~~~l~HiESRpsk~~~~~~e~fV~ce~~~~~l~~lI~sLr~v  107 (115)
T cd04930          42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQV  107 (115)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHH
T ss_conf             889999667753699999999864846999762455678876379999605586699999999998


No 133
>PRK06291 aspartate kinase; Provisional
Probab=69.35  E-value=6.8  Score=20.32  Aligned_cols=26  Identities=15%  Similarity=0.271  Sum_probs=22.7

Q ss_pred             ECCCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf             82878668899989973699632277
Q 537021.9.peg.3   30 NADILGIVVFVGNILGEYGINIAHFH   55 (100)
Q Consensus        30 ~~D~PG~I~~v~~~L~~~~INIa~m~   55 (100)
                      -.+.||+.+++-+.|++++|||....
T Consensus       331 m~~~~g~~~~if~~l~~~~i~v~~i~  356 (466)
T PRK06291        331 MVGVPGVAARIFSALAREGVNVIMIS  356 (466)
T ss_pred             CCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             55300068999899987398089998


No 134
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=68.28  E-value=10  Score=19.42  Aligned_cols=59  Identities=19%  Similarity=0.206  Sum_probs=50.3

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCE
Q ss_conf             798399999828786688999899736996322774214789818999994788998999998649882
Q 537021.9.peg.3   21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTI   89 (100)
Q Consensus        21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v   89 (100)
                      |.-+||++.+-|+-| ++++=++=|.         +||.++.++||....-+..+++...+.|+++...
T Consensus       872 PnANTiIIe~AD~fG-LsQLyQLRGR---------VGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~~  930 (1139)
T COG1197         872 PNANTIIIERADKFG-LAQLYQLRGR---------VGRSNKQAYAYFLYPPQKALTEDAEKRLEAIASF  930 (1139)
T ss_pred             CCCCEEEEECCCCCC-HHHHHHHCCC---------CCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf             787558896543345-7888875165---------4776762899996267554587899999999723


No 135
>PRK10689 transcription-repair coupling factor; Provisional
Probab=67.22  E-value=11  Score=19.14  Aligned_cols=58  Identities=19%  Similarity=0.197  Sum_probs=45.2

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCC
Q ss_conf             79839999982878668899989973699632277421478981899999478899899999864988
Q 537021.9.peg.3   21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVT   88 (100)
Q Consensus        21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~   88 (100)
                      |.-+|+++.+-|+-| ++++-++=|.         +||.++..+||....-++.++++..+.|+++..
T Consensus       878 p~ant~ii~~a~~~g-l~ql~qlrgr---------vgr~~~~ayaYll~~~~~~lt~~A~kRL~ai~~  935 (1148)
T PRK10689        878 PTANTIIIERADHFG-LAQLHQLRGR---------VGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIAS  935 (1148)
T ss_pred             CCCCEEEEECHHHCC-HHHHHHHCCC---------CCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             788479997532145-5777754365---------577887079999867877789899999999997


No 136
>cd04927 ACT_ACR-like_2 Second  ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second  ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana  predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.76  E-value=12  Score=19.02  Aligned_cols=62  Identities=15%  Similarity=0.179  Sum_probs=45.6

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECC-------CCCHHHHHHHHCC
Q ss_conf             9999982878668899989973699632277421478981899999478-------8998999998649
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDG-------SILNSVLEKLSVN   86 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~-------~i~~~vl~~i~~~   86 (100)
                      .|=+.-.|++|.+-.|+..|.+-...|....++....|...=++.-+|.       .=.+|+.+.+++.
T Consensus         2 lLk~~~~DR~GLLHDVt~~L~eLeltI~rvKVsTtPdgrv~DlFfiTD~r~ll~tk~R~~e~~~~l~~v   70 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAV   70 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHEEEEEEEEEEECCCCCCEEEEEEEECCHHHCCCHHHHHHHHHHHHHH
T ss_conf             489998256733888999987612788998987189982899999927556646256679999999998


No 137
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.28  E-value=9.3  Score=19.60  Aligned_cols=44  Identities=16%  Similarity=0.107  Sum_probs=31.1

Q ss_pred             EECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCC
Q ss_conf             98287866889998997369963227742147898189999947889
Q 537021.9.peg.3   29 VNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI   75 (100)
Q Consensus        29 ~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i   75 (100)
                      ...-.+|+.+++-+.|+++||||.-..   +...+..++++--+++.
T Consensus         9 ~~~~~~~ia~r~F~al~~~gvNv~mIs---QGaSe~NIs~vV~~~d~   52 (65)
T cd04918           9 NVQRSSLILERAFHVLYTKGVNVQMIS---QGASKVNISLIVNDSEA   52 (65)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEE---CCCCCCCEEEEECHHHH
T ss_conf             343341789999999986898479871---78873428999807899


No 138
>TIGR00656 asp_kin_monofn asparate kinase, monofunctional class; InterPro: IPR005260   Aspartate kinase catalyzes the first step in the biosynthesis of Lys (via its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of these three amino acid end products . The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenase, which catalyses the next step in the biosynthesis of these amino acids. Inn contrast, the Lys-sensitive form (III) is a monofunctional enzyme; homoserine dehydrogenase is not part of the Lys biosynthetic pathway.    This entry represents a subclass of aspartate kinases that are mostly Lys-sensitive and are not fused to homoserine dehydrogenase. The E. coli enzyme is a homodimer, while the Bacillus and Corynebacterium enzymes are alpha 2/beta 2 heterotetramers, where the beta subunit is translated from an in-phase alternative initiator at Met-246 , . The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases. ; GO: 0004072 aspartate kinase activity, 0009058 biosynthetic process.
Probab=65.90  E-value=12  Score=19.04  Aligned_cols=56  Identities=20%  Similarity=0.089  Sum_probs=39.2

Q ss_pred             EECCCCCHHHHHHHHHHHCCCCEEEEEEECCC-CCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf             98287866889998997369963227742147-898189999947889989999986
Q 537021.9.peg.3   29 VNADILGIVVFVGNILGEYGINIAHFHLGRSQ-STEHAISFLCIDGSILNSVLEKLS   84 (100)
Q Consensus        29 ~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~-~g~~A~~ii~vD~~i~~~vl~~i~   84 (100)
                      .-.++||+++.+...|+++++|+.....+... +.+..+.+-..|.+-..+.+....
T Consensus       336 ~~~~~~g~~~~~~~~la~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~  392 (480)
T TIGR00656       336 GMLGKPGFLAELFGALAERGINVDLISQTPSEDKTSISLTVDEEDADEAVRALKDES  392 (480)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf             323554058899988741574289985067766330589972466068999887654


No 139
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.72  E-value=10  Score=19.39  Aligned_cols=53  Identities=17%  Similarity=0.215  Sum_probs=33.4

Q ss_pred             CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHHHCCC
Q ss_conf             8786688999899736996322774214789818999994----7889989999986498
Q 537021.9.peg.3   32 DILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKLSVNV   87 (100)
Q Consensus        32 D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i~~~~   87 (100)
                      -.+|++++|=++|++|++-+.-...+-   -..++++=..    +.+..+.++++|.++-
T Consensus        13 ~a~GFLa~VF~if~~h~iSVDlitTSE---vsVslTlD~~~~~~~~~~l~~Ll~eL~~~c   69 (75)
T cd04935          13 QQVGFLADVFAPFKKHGVSVDLVSTSE---TNVTVSLDPDPNGLDPDVLDALLDDLNQIC   69 (75)
T ss_pred             HHCCHHHHHHHHHHHCCCCEEEEEEEE---EEEEEEECCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             562649999999998497178997015---799999758876546689999999998527


No 140
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=62.83  E-value=6  Score=20.59  Aligned_cols=47  Identities=28%  Similarity=0.341  Sum_probs=30.0

Q ss_pred             CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHH
Q ss_conf             878668899989973699632277421478981899999478899899999
Q 537021.9.peg.3   32 DILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEK   82 (100)
Q Consensus        32 D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~   82 (100)
                      ..||+.+++-+.|+++++||....-+-.   ...++ +-++++-.+++++.
T Consensus        12 ~~~~~~~~if~~L~~~~i~v~~I~q~~s---~~~is-f~v~~~~~~~a~~~   58 (60)
T cd04868          12 GTPGVAAKIFSALAEAGINVDMISQSES---EVNIS-FTVDESDLEKAVKA   58 (60)
T ss_pred             CCCCHHHHHHHHHHHCCCCHHHHHCCCC---CCEEE-EEEEHHHHHHHHHH
T ss_conf             8837999999999984999889402677---43399-99848999999997


No 141
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase; InterPro: IPR005961    This entry represents the large, tetrameric form of phenylalanine-4-hydroxylase (PAH; 1.14.16.1 from EC), as found in metazoans. PAH irreversibly converts phenylalanine to tyrosine, and is known to be the rate-limiting step in phenylalanine catabolism in some systems. It is closely related to metazoan tyrosine 3-monooxygenase and tryptophan 5-monoxygenase, and more distantly to monomeric phenylalanine-4-hydroxylases of some Gram-negative bacteria. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity . However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.   A deficiency in PAH can lead to phenylketonuria (PKU), an autosomal recessive genetic disorder characterised by an inability to metabolise phenylalanine, resulting in elevated Phe levels in the bloodstream that can lead to mental retardation if left untreated .    More information about these proteins can be found at Protein of the Month: Phenylalanine Hydroxylase .; GO: 0004505 phenylalanine 4-monooxygenase activity, 0006559 L-phenylalanine catabolic process.
Probab=61.91  E-value=15  Score=18.51  Aligned_cols=71  Identities=14%  Similarity=0.232  Sum_probs=48.3

Q ss_pred             EEEEEECCCCEEEEEECCC---CCHHHHHHHHHHHCCCCEEEEEE--ECCCCCCEEEEEEEECCCCC----HHHHHHHHC
Q ss_conf             8997657983999998287---86688999899736996322774--21478981899999478899----899999864
Q 537021.9.peg.3   15 INFDVDIGRLMICIVNADI---LGIVVFVGNILGEYGINIAHFHL--GRSQSTEHAISFLCIDGSIL----NSVLEKLSV   85 (100)
Q Consensus        15 ~~v~~~~~~~~L~i~~~D~---PG~I~~v~~~L~~~~INIa~m~l--~r~~~g~~A~~ii~vD~~i~----~~vl~~i~~   85 (100)
                      ..+.-......|++.=+|.   -|.|+.+-.++-+++||...+.-  |+..+|..==..++.|..-+    +++++.+++
T Consensus        10 ~~~~~~~~~~~l~Fslk~~sls~GaLa~~L~~F~~~dvNL~HiESRpS~~~~G~~Yef~v~~d~~~~h~~~~~~i~~l~~   89 (445)
T TIGR01268        10 VDVNENSAKTSLIFSLKEESLSAGALAEVLKLFQEHDVNLTHIESRPSKTKPGDEYEFFVELDEKSDHDKLEDVIESLRE   89 (445)
T ss_pred             CCCCCCCCCEEEEEECCHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             63001357778998414000011048999888875688457730454568899710357641247754579999999998


No 142
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of  the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of  the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD 
Probab=59.55  E-value=17  Score=18.28  Aligned_cols=55  Identities=15%  Similarity=0.221  Sum_probs=36.5

Q ss_pred             CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHHHCCCCE
Q ss_conf             8786688999899736996322774214789818999994----788998999998649882
Q 537021.9.peg.3   32 DILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKLSVNVTI   89 (100)
Q Consensus        32 D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i~~~~~v   89 (100)
                      -.+|+++++=.+|++|++.+.-...|   .-..++++=..    |.+..++++++|+++-.|
T Consensus        13 ~~~GFLa~vF~if~~~~vsVDlisTS---EvsVS~tlD~~~~~~~~~~l~~l~~eL~~~g~V   71 (75)
T cd04912          13 GAHGFLAKVFEIFAKHGLSVDLISTS---EVSVSLTLDPTKNLSDQLLLDALVKDLSQIGDV   71 (75)
T ss_pred             HHCCHHHHHHHHHHHCCCCEEEEECC---CEEEEEEECCCCCCCCHHHHHHHHHHHHHCCEE
T ss_conf             56328999999999829955899805---518999984887532066799999999955548


No 143
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.38  E-value=19  Score=17.98  Aligned_cols=55  Identities=18%  Similarity=0.211  Sum_probs=37.1

Q ss_pred             CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHHHCCCCE
Q ss_conf             8786688999899736996322774214789818999994----788998999998649882
Q 537021.9.peg.3   32 DILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKLSVNVTI   89 (100)
Q Consensus        32 D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i~~~~~v   89 (100)
                      ...|+++++=.+|++|++-+.-...|   .-..++++=..    |...+++++++|+++-.|
T Consensus        13 ~~~GFLa~vF~if~~h~isVDlitTS---EvsVslTlD~~~~~~~~~l~~~ll~eL~~~~~V   71 (75)
T cd04932          13 HAQGFLAKVFGILAKHNISVDLITTS---EISVALTLDNTGSTSDQLLTQALLKELSQICDV   71 (75)
T ss_pred             HHCCHHHHHHHHHHHCCCCEEEEECC---EEEEEEEECCCCCCCHHHHHHHHHHHHHHCCEE
T ss_conf             65367999999999819954899704---269999975887530366799999999960628


No 144
>pfam03927 NapD NapD protein. Uncharacterized protein involved in formation of periplasmic nitrate reductase.
Probab=55.96  E-value=19  Score=17.94  Aligned_cols=63  Identities=8%  Similarity=-0.061  Sum_probs=39.2

Q ss_pred             CCCCHHHHHHHHHHH-CCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf             878668899989973-6996322774214789818999994788998999998649882999999974
Q 537021.9.peg.3   32 DILGIVVFVGNILGE-YGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEFN   98 (100)
Q Consensus        32 D~PG~I~~v~~~L~~-~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i~~~   98 (100)
                      =+|..+..+...|.. .|+-|...    ...|...+++=.-+..---+.++.|+++|||.++..+--.
T Consensus        11 ~~Pe~~~~V~~~l~~~pg~Eih~~----~~~GKiVVtiE~~~~~~~~~~i~~i~~l~GVlsa~lVYh~   74 (78)
T pfam03927        11 VRPERLAEVKAAILALPGAEIHAV----SPEGKLVVVLEGESQGAILDTIEAINALEGVLSASLVYHQ   74 (78)
T ss_pred             ECHHHHHHHHHHHHCCCCCEEECC----CCCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf             687779999999974999688637----9994299999728827999999998659980489876785


No 145
>pfam06897 DUF1269 Protein of unknown function (DUF1269). This family consists of several bacterial and archaeal proteins of around 200 residues in length. The function of this family is unknown.
Probab=50.48  E-value=13  Score=18.77  Aligned_cols=52  Identities=21%  Similarity=0.296  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHCCCCEEEEE-EECCCCCCEEEEEEEECCCCCHHHHHHHHCCCC
Q ss_conf             8899989973699632277-421478981899999478899899999864988
Q 537021.9.peg.3   37 VVFVGNILGEYGINIAHFH-LGRSQSTEHAISFLCIDGSILNSVLEKLSVNVT   88 (100)
Q Consensus        37 I~~v~~~L~~~~INIa~m~-l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~   88 (100)
                      .|.++..|++++||=..|. ++..-.-|.+-.++-+.+..++.++++++...+
T Consensus        28 ~GAl~G~l~D~GIdD~Fik~l~~~l~pGsSALflLv~~~~~dkV~~~l~~~~g   80 (102)
T pfam06897        28 AGALSGSLSDYGIDDDFIKELGETLPPGSSALFVLVRKATPDKVLEELRSFGG   80 (102)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHCCC
T ss_conf             77776014415878799999996379986157754335878899999861598


No 146
>pfam05088 Bac_GDH Bacterial NAD-glutamate dehydrogenase. This family consists of several bacterial proteins which are closely related to NAD-glutamate dehydrogenase found in Streptomyces clavuligerus. Glutamate dehydrogenases (GDHs) are a broadly distributed group of enzymes that catalyse the reversible oxidative deamination of glutamate to ketoglutarate and ammonia.
Probab=46.47  E-value=28  Score=17.10  Aligned_cols=64  Identities=23%  Similarity=0.236  Sum_probs=49.3

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEE-----EEECCCCC--------------CEEEEEEEECCCCCHHHHHH
Q ss_conf             983999998287866889998997369963227-----74214789--------------81899999478899899999
Q 537021.9.peg.3   22 GRLMICIVNADILGIVVFVGNILGEYGINIAHF-----HLGRSQST--------------EHAISFLCIDGSILNSVLEK   82 (100)
Q Consensus        22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m-----~l~r~~~g--------------~~A~~ii~vD~~i~~~vl~~   82 (100)
                      ..+.+.+.+.|.|=.+-+|...|..+|+.|..+     .+.|...|              .++++.+++|...+++.+++
T Consensus        15 ~~tvi~iv~dDmPFLVDSv~~~l~~~g~~i~~~~hpvl~v~Rd~~G~l~~~~~~~~~~~~~ES~i~iei~~~~~~~~~~~   94 (1526)
T pfam05088        15 THTVVEIVNDDMPFLVDSVTMELNRLGLTIHLLLHPVLRVRRDKDGELTEVLPADDSGGLRESLIHIEIDRLTDAEELEA   94 (1526)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHH
T ss_conf             97699996599770999999999977996589976828999989997887237788999715899999559899899999


Q ss_pred             HHC
Q ss_conf             864
Q 537021.9.peg.3   83 LSV   85 (100)
Q Consensus        83 i~~   85 (100)
                      |++
T Consensus        95 l~~   97 (1526)
T pfam05088        95 LEE   97 (1526)
T ss_pred             HHH
T ss_conf             999


No 147
>TIGR00580 mfd transcription-repair coupling factor; InterPro: IPR004576 All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transcribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by TcrF, which releases RNAP and the truncated transcript. The TcrF may replace RNAP at the lesion site and then recruit the UvrA/B/C repair system.; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=46.05  E-value=5.4  Score=20.86  Aligned_cols=60  Identities=20%  Similarity=0.227  Sum_probs=49.7

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEE
Q ss_conf             7983999998287866889998997369963227742147898189999947889989999986498829
Q 537021.9.peg.3   21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIR   90 (100)
Q Consensus        21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~   90 (100)
                      |.-+||++.+-|+-| +|+.=++=|.         +||.++.++||..+.-+..+++...++|+.+....
T Consensus       790 PnANTiIi~~AD~FG-LaQLYQLRGR---------VGRs~~~AYAYlL~~~~~~Lt~~A~~RL~ai~~f~  849 (997)
T TIGR00580       790 PNANTIIIDRADKFG-LAQLYQLRGR---------VGRSKKKAYAYLLYPHQKALTEDALKRLEAIQEFS  849 (997)
T ss_pred             HHHHHHHHHHHCCCC-HHHHHHCCCE---------ECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             001268687521147-0347453631---------20587126898334774001458999999997301


No 148
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=42.12  E-value=15  Score=18.48  Aligned_cols=26  Identities=27%  Similarity=0.349  Sum_probs=22.1

Q ss_pred             CCCCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             28786688999899736996322774
Q 537021.9.peg.3   31 ADILGIVVFVGNILGEYGINIAHFHL   56 (100)
Q Consensus        31 ~D~PG~I~~v~~~L~~~~INIa~m~l   56 (100)
                      =|.+|++++|.+-|++.+|-|=....
T Consensus        74 FgltGilasV~~pLsd~gigIFavSt   99 (128)
T COG3603          74 FGLTGILASVSQPLSDNGIGIFAVST   99 (128)
T ss_pred             CCCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             78304146654457657952799971


No 149
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.47  E-value=33  Score=16.67  Aligned_cols=59  Identities=19%  Similarity=0.286  Sum_probs=43.5

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCC-C---HHHHHHHHCC
Q ss_conf             999998287866889998997369963227742147898189999947889-9---8999998649
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI-L---NSVLEKLSVN   86 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i-~---~~vl~~i~~~   86 (100)
                      ++-+.-..+||...+....|+..  ||..++- |.+.+..|..++.+.-+- +   +++++.+++.
T Consensus         3 llav~iPErpGsf~~f~~~lg~r--~ITEF~Y-R~~~~~~A~V~vGi~~~~~~~e~~~l~~~L~~~   65 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIGPR--NITEFNY-RYADEKDAHIFVGVSVANGAEELAELLEDLKSA   65 (85)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC--CCEEEEE-ECCCCCCEEEEEEEEECCCHHHHHHHHHHHHHC
T ss_conf             79995699986999999985877--4103577-437876379999987279578999999999987


No 150
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=38.70  E-value=23  Score=17.52  Aligned_cols=32  Identities=16%  Similarity=-0.003  Sum_probs=15.3

Q ss_pred             EEEEEEEECCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf             18999994788998999998649882999999
Q 537021.9.peg.3   64 HAISFLCIDGSILNSVLEKLSVNVTIRFVKQF   95 (100)
Q Consensus        64 ~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i   95 (100)
                      .+++-.+.|++..+.+.++|++.|||.+++++
T Consensus        62 ~vyL~~~~~~~~~~~v~~~i~~~~gV~~v~~~   93 (297)
T COG2177          62 TVYLQIDADQDDAALVREKIEGIPGVKSVRFI   93 (297)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             99973687868899999998468996447876


No 151
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.32  E-value=38  Score=16.40  Aligned_cols=60  Identities=20%  Similarity=0.196  Sum_probs=38.4

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEE--EEECCCCCHHHHHHHHCC
Q ss_conf             99999828786688999899736996322774214789818999--994788998999998649
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISF--LCIDGSILNSVLEKLSVN   86 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~i--i~vD~~i~~~vl~~i~~~   86 (100)
                      ...+.-..+||.+-+....|+. ..||..++- |.+....|-.+  +++...-.+++.+.++++
T Consensus         3 ~f~v~fPErpGaL~~Fl~~l~~-~~nIT~F~Y-R~~g~~~a~vlvGi~~~~~e~~~l~~~l~~~   64 (81)
T cd04907           3 LFRFEFPERPGALKKFLNELLP-KWNITLFHY-RNQGSDYGRVLVGIQVPDADLDELKERLDAL   64 (81)
T ss_pred             EEEEECCCCCCHHHHHHHHHCC-CCCEEEEEE-EECCCCCCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf             8999678998789999998389-775778999-7069874328999970888899999999986


No 152
>PRK01002 nickel responsive regulator; Provisional
Probab=38.10  E-value=38  Score=16.38  Aligned_cols=73  Identities=16%  Similarity=0.241  Sum_probs=55.2

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHCCCCE-EEEEEECCCCCCEEEEEEEECCCCC--HHHHHHHHCCCCEEEEEEEEE
Q ss_conf             83999998287866889998997369963-2277421478981899999478899--899999864988299999997
Q 537021.9.peg.3   23 RLMICIVNADILGIVVFVGNILGEYGINI-AHFHLGRSQSTEHAISFLCIDGSIL--NSVLEKLSVNVTIRFVKQFEF   97 (100)
Q Consensus        23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INI-a~m~l~r~~~g~~A~~ii~vD~~i~--~~vl~~i~~~~~v~~vr~i~~   97 (100)
                      |...++.+..+.++.-+++.+--++.-.| +++++--.  ...-+-++-+.++..  .++.++|.+++||..+++.-.
T Consensus        58 G~i~vvYdH~~~~l~~~L~~iqH~~~~~I~ss~Hvhld--~~~ClEvivv~G~~~~i~~l~~~l~~~kGV~~~kL~~~  133 (141)
T PRK01002         58 GTISIIYDHHYTDVMEKLTDIQHDYRKLIVATIHMHMD--HDHCMEVVLVKGDASEIRELTDKLTSLKGVKQVKLTVM  133 (141)
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEECC--CCCEEEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf             99999996786519999999977330609888877517--88608999997378999999999854489118999996


No 153
>PRK02264 N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase; Provisional
Probab=37.42  E-value=39  Score=16.32  Aligned_cols=63  Identities=17%  Similarity=0.248  Sum_probs=42.4

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEE-E--------EC-----------CCCCCEEEEEEEECCCCCHHHHHHHHC
Q ss_conf             999982878668899989973699632277-4--------21-----------478981899999478899899999864
Q 537021.9.peg.3   26 ICIVNADILGIVVFVGNILGEYGINIAHFH-L--------GR-----------SQSTEHAISFLCIDGSILNSVLEKLSV   85 (100)
Q Consensus        26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~-l--------~r-----------~~~g~~A~~ii~vD~~i~~~vl~~i~~   85 (100)
                      .+-.+.|.| +|+-.++--+.+.+....+. +        .+           ..+...|+.++|.|+.+|+++.++|.+
T Consensus        77 ~v~V~td~P-viAcLgSQyAGW~l~~~~ffamGSGPaRAla~k~e~lf~~i~Y~D~~~~avl~lE~~~lP~~~v~~~iA~  155 (318)
T PRK02264         77 FVEVSTDHP-AIACLGSQKAGWSLSVGDFFALGSGPARALALKPEELYEEIGYRDDADVAVLVLESDKLPDEEVAEKIAE  155 (318)
T ss_pred             EEEEEECCH-HHHHHHCCCCCCEECCCCEEEECCCHHHHHHCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             499971856-9998723434845134888563575777750584878987287136770799997588999999999999


Q ss_pred             CCCE
Q ss_conf             9882
Q 537021.9.peg.3   86 NVTI   89 (100)
Q Consensus        86 ~~~v   89 (100)
                      --+|
T Consensus       156 ~cgv  159 (318)
T PRK02264        156 ECGV  159 (318)
T ss_pred             HCCC
T ss_conf             8199


No 154
>pfam00585 Thr_dehydrat_C C-terminal regulatory domain of Threonine dehydratase. Threonine dehydratases pfam00291 all contain a carboxy terminal region. This region may have a regulatory role. Some members contain two copies of this region. This family is homologous to the pfam01842 domain.
Probab=36.99  E-value=40  Score=16.28  Aligned_cols=62  Identities=16%  Similarity=0.262  Sum_probs=43.1

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE--CCCCC-HHHHHHHHCC
Q ss_conf             8399999828786688999899736996322774214789818999994--78899-8999998649
Q 537021.9.peg.3   23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI--DGSIL-NSVLEKLSVN   86 (100)
Q Consensus        23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v--D~~i~-~~vl~~i~~~   86 (100)
                      .+.+.+.-..+||.+.+.-+.|+.. .||..++- |.+....|..++.+  +..-. +++++.+++.
T Consensus        10 E~~~~v~iPErpGal~~Fl~~l~~~-~~ITeF~Y-R~~~~~~a~VlvGi~~~~~~e~~~l~~~L~~~   74 (91)
T pfam00585        10 EALFAVEFPERPGALLKFLDLLGGR-NNITLFHY-RKHGAKNGSILVGVQLSQASDLDEFIERLEKL   74 (91)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHCCC-CCEEEEEE-ECCCCCCEEEEEEEEECCHHHHHHHHHHHHHC
T ss_conf             5899998888874999999982995-55558998-54589703599999979888999999999975


No 155
>TIGR03120 one_C_mch methenyltetrahydromethanopterin cyclohydrolase. Members of this protein family are the enzyme methenyltetrahydromethanopterin cyclohydrolase, a key enzyme for tetrahydromethanopterin (H4MPT)-linked C1 transfer metabolism.
Probab=36.54  E-value=40  Score=16.24  Aligned_cols=63  Identities=14%  Similarity=0.221  Sum_probs=42.0

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEE---------EEC-----------CCCCCEEEEEEEECCCCCHHHHHHHHC
Q ss_conf             999982878668899989973699632277---------421-----------478981899999478899899999864
Q 537021.9.peg.3   26 ICIVNADILGIVVFVGNILGEYGINIAHFH---------LGR-----------SQSTEHAISFLCIDGSILNSVLEKLSV   85 (100)
Q Consensus        26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~---------l~r-----------~~~g~~A~~ii~vD~~i~~~vl~~i~~   85 (100)
                      .+-.+.|.| +|+-.++--+.+.+....+.         +.+           ..+...|+.++|.|+.+|+++.++|.+
T Consensus        75 ~v~V~td~P-viAcLgSQyAGW~l~~~~f~alGSGPaRAla~k~e~lf~~l~Y~d~~~~avl~lE~~~lP~~~v~~~iA~  153 (312)
T TIGR03120        75 AVQVTTDHP-VIACLGSQKAGWQVKVGKYFAMGSGPARALALKPKETYEEIGYEDDSDVAVIVLESDKLPDEEVAEYIAD  153 (312)
T ss_pred             EEEEEECCH-HHHHHHCCCCCCEECCCCEEEECCCHHHHHHCCCHHHHHHCCCEECCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf             499970857-9998723434846334877663574777752384778987197106780899997588999999999999


Q ss_pred             CCCE
Q ss_conf             9882
Q 537021.9.peg.3   86 NVTI   89 (100)
Q Consensus        86 ~~~v   89 (100)
                      --+|
T Consensus       154 ~cgv  157 (312)
T TIGR03120       154 ECGV  157 (312)
T ss_pred             HCCC
T ss_conf             8199


No 156
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=34.78  E-value=43  Score=16.08  Aligned_cols=64  Identities=9%  Similarity=0.031  Sum_probs=40.7

Q ss_pred             CCCCCHHHHHHHHHHHCCCCEEEEEEE-CCCCCCEEEEEEEE-CCCCCHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf             287866889998997369963227742-14789818999994-788998999998649882999999974
Q 537021.9.peg.3   31 ADILGIVVFVGNILGEYGINIAHFHLG-RSQSTEHAISFLCI-DGSILNSVLEKLSVNVTIRFVKQFEFN   98 (100)
Q Consensus        31 ~D~PG~I~~v~~~L~~~~INIa~m~l~-r~~~g~~A~~ii~v-D~~i~~~vl~~i~~~~~v~~vr~i~~~   98 (100)
                      .=+|..++.|...|..    +....+. .+...|.-+.+++. ++..--+.+++|+++|||.++.++-=.
T Consensus        13 qa~Pe~~~~V~~~i~a----lpg~EIh~~d~~~GKlVVvlE~~~~~~l~~~i~~I~~l~GVlsasLVYHq   78 (87)
T PRK10553         13 QAKSERISDISTQLNA----FPGCEVAVSDAPSGQLIVVVEAEDSETLLQTIESVRNVEGVLAVSLVYHQ   78 (87)
T ss_pred             EECHHHHHHHHHHHHH----CCCCEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf             9476889999999970----89978713568897299999508877999999988558972689866764


No 157
>cd00545 MCH Methenyltetrahydromethanopterin (methenyl-H4MPT) cyclohydrolase (MCH). MCH is a cytoplasmic enzyme that has been identified in methanogenic archaea, sulfate- reducing archaea, and methylotrophic bacteria.  It catalyzes the reversible formation of N(5), N(10)-methenyltetrahydromethanopterin (methenyl-H4MPT+) from N(5)-formyltetrahydromethanopterin (formyl- H4MPT), in the third step of the reaction to reduce CO2 to CH4. The protein functions as a homodimer or homotrimer, depending on the organism.
Probab=34.48  E-value=44  Score=16.06  Aligned_cols=65  Identities=18%  Similarity=0.255  Sum_probs=42.9

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEE---------EEC-----------CCCCCEEEEEEEECCCCCHHHHHHH
Q ss_conf             39999982878668899989973699632277---------421-----------4789818999994788998999998
Q 537021.9.peg.3   24 LMICIVNADILGIVVFVGNILGEYGINIAHFH---------LGR-----------SQSTEHAISFLCIDGSILNSVLEKL   83 (100)
Q Consensus        24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~---------l~r-----------~~~g~~A~~ii~vD~~i~~~vl~~i   83 (100)
                      +.-+-.+.|.| +|+-.++--+.+.+....+.         +.+           ..+...|+.++|.|+.+|+++.++|
T Consensus        73 ~~~v~V~td~P-viACLgSQyAGW~l~~~~f~a~GSGPaRALa~k~e~lf~~i~Y~D~~~~avl~lE~~~lP~~~v~~~i  151 (312)
T cd00545          73 PPTVEVHTDNP-VIACLGSQYAGWSLSVGDFFALGSGPARALALKPEELYEEIGYRDDAEVAVLVLESDKLPPEEVAEKV  151 (312)
T ss_pred             CCEEEEEECCH-HHHHHHCCCCCCEECCCCEEEECCCHHHHHHCCCHHHHHHCCCEECCCCEEEEEECCCCCCHHHHHHH
T ss_conf             75599972856-99987234348461358886635756676514838789870871057817999975889999999999


Q ss_pred             HCCCCE
Q ss_conf             649882
Q 537021.9.peg.3   84 SVNVTI   89 (100)
Q Consensus        84 ~~~~~v   89 (100)
                      .+--+|
T Consensus       152 A~~cgv  157 (312)
T cd00545         152 AAECGV  157 (312)
T ss_pred             HHHCCC
T ss_conf             998199


No 158
>pfam02289 MCH Cyclohydrolase (MCH). Methenyl tetrahydromethanopterin cyclohydrolase EC:3.5.4.27 is involved in methanogenesis in bacteria and archaea, producing methane from carbon monoxide or carbon dioxide.
Probab=32.63  E-value=47  Score=15.89  Aligned_cols=66  Identities=17%  Similarity=0.262  Sum_probs=42.7

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEE-EE-------------------CCCCCCEEEEEEEECCCCCHHHHHH
Q ss_conf             839999982878668899989973699632277-42-------------------1478981899999478899899999
Q 537021.9.peg.3   23 RLMICIVNADILGIVVFVGNILGEYGINIAHFH-LG-------------------RSQSTEHAISFLCIDGSILNSVLEK   82 (100)
Q Consensus        23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~-l~-------------------r~~~g~~A~~ii~vD~~i~~~vl~~   82 (100)
                      .+.-+-.+.|.| +|+-.++--+.+.+....+. ++                   -..+...|+.++|.|+.+|+++.++
T Consensus        72 ~~~~v~V~td~P-viAcLgSQyAGW~l~~~~ffamGSGPaRALa~k~e~lf~~i~Y~D~~~~avl~lE~~~lP~~~v~~~  150 (312)
T pfam02289        72 WLPAVQVKTDHP-AIACLGSQKAGWSVSVGDYFAMGSGPARALALKPKETYEEIGYEDDADVAVLVLESDKLPDEKVVEK  150 (312)
T ss_pred             CCCEEEEEECCH-HHHHHHCCCCCCEECCCCEEEECCCHHHHHCCCCHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf             774499972857-9998713434846325877462574777750485878987187115781799997588999999999


Q ss_pred             HHCCCCE
Q ss_conf             8649882
Q 537021.9.peg.3   83 LSVNVTI   89 (100)
Q Consensus        83 i~~~~~v   89 (100)
                      |.+--+|
T Consensus       151 iA~~cgv  157 (312)
T pfam02289       151 VAKECGV  157 (312)
T ss_pred             HHHHCCC
T ss_conf             9998199


No 159
>PRK08818 prephenate dehydrogenase; Provisional
Probab=31.23  E-value=50  Score=15.76  Aligned_cols=55  Identities=15%  Similarity=0.187  Sum_probs=39.5

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHH
Q ss_conf             99999828786688999899736996322774214789818999994788998999
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVL   80 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl   80 (100)
                      .=+..-.|+||-+-.+-.++-.|++|.++.+.+|...|+ --.-+..|---+...+
T Consensus       298 ~sv~~P~D~~~S~r~ll~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  352 (373)
T PRK08818        298 LSVYLPEDQPGSLRRLLHVFEQHGVNLSSIHSSRTPGGE-LHFRIGFEPGSDRAAL  352 (373)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCE-EEEEEECCCCCCHHHH
T ss_conf             768788988734999999999845624541046788853-6899823778877888


No 160
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase; InterPro: IPR005963    Tryptophan 5-monooxygenase (1.14.16.4 from EC) is a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria. It is the rate-limiting enzyme in the biosynthesis of serotonin in the central nervous system and catalyzes the first step of the synthesis of melatonin in the pineal gland .  L-tryptophan + tetrahydropteridine + O2 = 5-hydroxy-L-tryptophan + dihydropteridine + H2O  ; GO: 0004510 tryptophan 5-monooxygenase activity, 0042427 serotonin biosynthetic process.
Probab=31.14  E-value=50  Score=15.75  Aligned_cols=74  Identities=23%  Similarity=0.225  Sum_probs=54.1

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEC----CCCCC-E-------EEEEEEECCCCCHHHHHHHHC-CCC
Q ss_conf             9839999982878668899989973699632277421----47898-1-------899999478899899999864-988
Q 537021.9.peg.3   22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGR----SQSTE-H-------AISFLCIDGSILNSVLEKLSV-NVT   88 (100)
Q Consensus        22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r----~~~g~-~-------A~~ii~vD~~i~~~vl~~i~~-~~~   88 (100)
                      +--+|++.-.+.-|=|.++-++|-+.+|||-.+..+.    .+++. .       .+.-++++..--+++++.|+. .-.
T Consensus        44 ~~~tiI~~l~~~~~dl~~~l~~f~d~~~nilHlE~r~Grln~~~~~~~sefe~~dvLv~ve~~~~~~~~~~~~L~~n~~~  123 (499)
T TIGR01270        44 QRLTIIFSLKNEVGDLSKALKIFQDKHINILHLESRKGRLNSKKATSKSEFETLDVLVDVEVDREELEEVLELLKSNELD  123 (499)
T ss_pred             EEEEEEEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf             07999987400143599999852678845888634654033431344000242024675157656799999997405744


Q ss_pred             EEEEEEE
Q ss_conf             2999999
Q 537021.9.peg.3   89 IRFVKQF   95 (100)
Q Consensus        89 v~~vr~i   95 (100)
                      ++.|...
T Consensus       124 ~~~v~~~  130 (499)
T TIGR01270       124 VLEVTSP  130 (499)
T ss_pred             EEEECCC
T ss_conf             5774176


No 161
>KOG2797 consensus
Probab=30.94  E-value=50  Score=15.73  Aligned_cols=36  Identities=14%  Similarity=0.118  Sum_probs=30.4

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             983999998287866889998997369963227742
Q 537021.9.peg.3   22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLG   57 (100)
Q Consensus        22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~   57 (100)
                      -...|++.+++-||++-++-++|+-+.||+-.....
T Consensus       280 ~ktsivf~~~~gp~vLfkvl~vfa~r~inltkIesR  315 (377)
T KOG2797         280 FKTSIVFFREKGPGVLFKVLSVFAFRSINLTKIESR  315 (377)
T ss_pred             CEEEEEEEEECCCCHHHHHHHHHHHHHCEEEEEECC
T ss_conf             145688886169823999999987631014433225


No 162
>PRK05925 aspartate kinase; Provisional
Probab=29.32  E-value=54  Score=15.58  Aligned_cols=44  Identities=18%  Similarity=0.068  Sum_probs=24.9

Q ss_pred             CHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHH
Q ss_conf             6688999899736996322774214789818999994788998999998
Q 537021.9.peg.3   35 GIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKL   83 (100)
Q Consensus        35 G~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i   83 (100)
                      +-++++-.+|+++++++.-+..+   .....+++  -+....++.++.+
T Consensus       313 ~~~~~vf~~l~~~~i~~~~i~s~---~~~vs~ti--~~~~~~~~~~~~l  356 (440)
T PRK05925        313 VRLEKVLGILRSLGIVPGLVMAQ---NSGVYFTT--DDDDISEEYIQHL  356 (440)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEC---CCEEEEEE--CHHHHHHHHHHHH
T ss_conf             66999999999759933899724---75399997--7036569999999


No 163
>TIGR02282 MltB lytic murein transglycosylase B; InterPro: IPR011757   This family consists of lytic murein transglycosylases (murein hydrolases) related to MltB (P41052 from SWISSPROT), which is a 38 kDa membrane-bound lipoprotein in Escherichia coli. The N-terminal region of this protein contains a lipoprotein-processing site which is conserved in about half the members of this family. Proteolytic cleavage of MltB produces a fully-active, soluble form of this enzyme known as Slt35 (for soluble lytic transglycosylase). This enzyme catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan. Its physiological role is unknown as deletion of the gene shows no obvious phenotype , though it has been suggested to play a role in recycling of muropeptides during cell elongation and/or cell division.   The Slt35 enzyme is a monomer with an ellipsoid shape and is composed of three distinct domains known as the alpha, beta and core domains , . The alpha domain contains mainly alpha-helices, while the beta domain consists of a five-stranded antiparallel beta-sheet flanked by a short alpha-helix. The core domain is sandwiched between the alpha and beta domains and its fold is similar to that of lysozyme, but contains a single metal ion binding site in a helix-loop-helix module that is similar to the eukaryotic EF-hand calcium-binding fold, though in this case the loop is slightly longer than usual. Binding of Ca(2+) to this EF hand motif has been shown to be important for thermal stability of the protein . The substrate binding sites are found in the cleft formed by the core domain of the enzyme .   Members of this family do not contain the putative peptidoglycan binding domain described by IPR002477 from INTERPRO, which is associated with several other classes of bacterial cell wall lytic enzymes..
Probab=28.25  E-value=9.4  Score=19.57  Aligned_cols=72  Identities=15%  Similarity=0.056  Sum_probs=45.3

Q ss_pred             EECCEEEEEECCCCEEEE-EECCCCCHHHHHHHHHHHCC-CC----EEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf             979989976579839999-98287866889998997369-96----3227742147898189999947889989999986
Q 537021.9.peg.3   11 KIQEINFDVDIGRLMICI-VNADILGIVVFVGNILGEYG-IN----IAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS   84 (100)
Q Consensus        11 ~i~g~~v~~~~~~~~L~i-~~~D~PG~I~~v~~~L~~~~-IN----Ia~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~   84 (100)
                      .+-.|.||+..+||+=|+ .+.|.   ||+|+..|-.|| +-    |+.+...+....+.....-.-.++.|.--+..|+
T Consensus       184 SYR~YAVDfD~dG~iDL~ns~~DA---IgSvANyl~~HGGW~~~~~V~~~~~~~~d~~~d~~~~~~~~g~~p~~~~~~L~  260 (323)
T TIGR02282       184 SYRQYAVDFDGDGHIDLFNSVDDA---IGSVANYLQAHGGWQRNDPVAVPAALAADAQGDKLLAKKFAGEKPHYSLSDLK  260 (323)
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCE---EEECHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCCEEHHHHH
T ss_conf             568761153578741488788763---77115653106733048814887105888743410213214787603078886


Q ss_pred             C
Q ss_conf             4
Q 537021.9.peg.3   85 V   85 (100)
Q Consensus        85 ~   85 (100)
                      +
T Consensus       261 ~  261 (323)
T TIGR02282       261 A  261 (323)
T ss_pred             H
T ss_conf             2


No 164
>KOG1250 consensus
Probab=27.69  E-value=58  Score=15.42  Aligned_cols=61  Identities=11%  Similarity=0.070  Sum_probs=44.8

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEC-CCCCHHHHHHHHC
Q ss_conf             999998287866889998997369963227742147898189999947-8899899999864
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCID-GSILNSVLEKLSV   85 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD-~~i~~~vl~~i~~   85 (100)
                      .+...-.|+||.+.++..+++..++++-+....|..-...-.....++ ..--++..++|++
T Consensus       375 ~l~v~l~d~pG~~~~l~~~i~~~~~se~~~~~~~~~~~~v~t~~v~~~~e~~~~~~~~ql~~  436 (457)
T KOG1250         375 RLLVALPDRPGGFNKLTELIGPLSVSEKDIRHERAWMRNVYTSFVKVVRETEGKEHEQQLKQ  436 (457)
T ss_pred             EEEEECCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHHHHH
T ss_conf             66541466788503457763446655455340477753114789999873122999999997


No 165
>PRK08744 consensus
Probab=26.69  E-value=60  Score=15.32  Aligned_cols=71  Identities=15%  Similarity=0.135  Sum_probs=45.5

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCC--CCEEEEEE-ECCCCCCEEEEEEEECC----CCCHHHHHHHHCCCCEEEEEEE
Q ss_conf             3999998287866889998997369--96322774-21478981899999478----8998999998649882999999
Q 537021.9.peg.3   24 LMICIVNADILGIVVFVGNILGEYG--INIAHFHL-GRSQSTEHAISFLCIDG----SILNSVLEKLSVNVTIRFVKQF   95 (100)
Q Consensus        24 ~~L~i~~~D~PG~I~~v~~~L~~~~--INIa~m~l-~r~~~g~~A~~ii~vD~----~i~~~vl~~i~~~~~v~~vr~i   95 (100)
                      .+.+-.....+..+.++..+|..+.  --=....+ .+...+ .+-..+.++.    .++++++..|++++|+..|+..
T Consensus      1112 ~l~~~~~~~~~~~~~~l~~~l~~~~~g~~~v~~~~~~~~~~~-~~~~~l~l~~~~~v~~~~~l~~~l~~~~g~~~v~~~ 1189 (1195)
T PRK08744       1112 RLSLRLDLREKQAWSRIDALLAKHRPGKTPLRLDLLLRSPSG-GVAGMLDLNGSHSVRIDQQLMDSLRADPAVRTLKVK 1189 (1195)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC-CEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEE
T ss_conf             159998556715899999999833899986489999962788-757999738857537899999999853285528998


No 166
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.66  E-value=60  Score=15.31  Aligned_cols=57  Identities=23%  Similarity=0.294  Sum_probs=38.0

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEE--EEECCC-CCHHHHHHHHCC
Q ss_conf             99828786688999899736996322774214789818999--994788-998999998649
Q 537021.9.peg.3   28 IVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISF--LCIDGS-ILNSVLEKLSVN   86 (100)
Q Consensus        28 i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~i--i~vD~~-i~~~vl~~i~~~   86 (100)
                      +.-..+||.+.+....|+. ..||..++- |.+....|-..  +++... =-+++++.|++.
T Consensus         3 v~iPErpGal~~F~~~l~~-~~~ITeF~Y-R~~~~~~a~vlvGi~~~~~~d~~~l~~~L~~~   62 (68)
T cd04885           3 VTFPERPGALKKFLELLGP-PRNITEFHY-RNQGGDEARVLVGIQVPDREDLAELKERLEAL   62 (68)
T ss_pred             EECCCCCCHHHHHHHHHCC-CCCEEEEEE-EECCCCEEEEEEEEEECCHHHHHHHHHHHHHC
T ss_conf             8557897699999998499-874358999-70698606799999959888899999999983


No 167
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and 
Probab=25.18  E-value=51  Score=15.70  Aligned_cols=51  Identities=16%  Similarity=0.156  Sum_probs=35.4

Q ss_pred             CHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCC
Q ss_conf             668899989973699632277421478981899999478899899999864988
Q 537021.9.peg.3   35 GIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVT   88 (100)
Q Consensus        35 G~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~   88 (100)
                      ..=-++=..||+++|.|.-.+++   ..+.++++-+-+.+-..++|+++.--|.
T Consensus        14 ~lq~~vF~~lA~~~ISvDfINI~---P~~~vfTV~~~~~~ka~~iL~~lg~~p~   64 (67)
T cd04914          14 DLQQRVFKALANAGISVDLINVS---PEEVIFTVDGEVAEKAVDILEKMGLDPS   64 (67)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEC---CCCEEEEECHHHHHHHHHHHHHCCCCCE
T ss_conf             59999999999759857899866---7747998077889999999998699837


No 168
>PRK11679 lipoprotein; Provisional
Probab=23.59  E-value=69  Score=14.99  Aligned_cols=46  Identities=13%  Similarity=0.000  Sum_probs=38.0

Q ss_pred             EEECCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf             9979989976579839999982878668899989973699632277
Q 537021.9.peg.3   10 IKIQEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFH   55 (100)
Q Consensus        10 v~i~g~~v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~   55 (100)
                      --++|-+++..++..++++.+.+-.-+-..|..+|.+.||-|+.-.
T Consensus        90 ~l~~gsr~e~~g~~~~~lv~~~~~~~LW~~v~~~l~e~~i~i~~~d  135 (345)
T PRK11679         90 ALISGARTQFNGDTATLLLENGENDTLWPQVVSVLQAKNYPIAKRD  135 (345)
T ss_pred             CCCCCCEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             5478836873797179998378678899999999997397368774


No 169
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=23.55  E-value=70  Score=14.99  Aligned_cols=54  Identities=11%  Similarity=0.059  Sum_probs=33.8

Q ss_pred             ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCC
Q ss_conf             8287866889998997369963227742147898189999947889989999986498
Q 537021.9.peg.3   30 NADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNV   87 (100)
Q Consensus        30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~   87 (100)
                      ..+.||+.+++-+.|++++||+--...+  +. +. ...+.+..+..+.+++.+++..
T Consensus       327 m~~~~g~~~riF~~L~~~~I~vi~isq~--ss-e~-si~~~~~~~~~~~a~~~l~~~~  380 (810)
T PRK09466        327 SQDFELAQKELDQLLKRAQLRPLAVGVH--AD-RR-LLQLAYTSEVADSALKLLDDAA  380 (810)
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEEEC--CC-CC-EEEEEEEHHHHHHHHHHHHHCC
T ss_conf             7883058999999999769708887860--67-86-5999986889999999998604


No 170
>PRK05406 LamB/YcsF family protein; Provisional
Probab=22.71  E-value=72  Score=14.90  Aligned_cols=40  Identities=28%  Similarity=0.345  Sum_probs=24.9

Q ss_pred             EEEEEECCEEEEEECCCCEEEEEECCCCCHHHHHH---HHHHHCCC
Q ss_conf             78999799899765798399999828786688999---89973699
Q 537021.9.peg.3    7 PRFIKIQEINFDVDIGRLMICIVNADILGIVVFVG---NILGEYGI   49 (100)
Q Consensus         7 ~riv~i~g~~v~~~~~~~~L~i~~~D~PG~I~~v~---~~L~~~~I   49 (100)
                      -++..++|-.+.+..+  +|++ |-|.||.+..+.   +.|.++||
T Consensus       204 g~V~ti~G~~i~i~ad--TICv-HgDtp~Av~iak~ir~~L~~~gI  246 (246)
T PRK05406        204 GRVTAIDGEWIPVEAD--TICV-HGDGPHAVAFARRIRAALEAAGI  246 (246)
T ss_pred             CCEEECCCCEEECCCC--EEEE-CCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             9689238988760489--8998-99997899999999999997769


No 171
>COG4803 Predicted membrane protein [Function unknown]
Probab=22.21  E-value=48  Score=15.83  Aligned_cols=56  Identities=21%  Similarity=0.168  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHCCCCEEEEE-EECC-CCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             8899989973699632277-4214-7898189999947889989999986498829999
Q 537021.9.peg.3   37 VVFVGNILGEYGINIAHFH-LGRS-QSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVK   93 (100)
Q Consensus        37 I~~v~~~L~~~~INIa~m~-l~r~-~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr   93 (100)
                      .|.++..|++.|||=..|. +++. ..|+.|+- +=+-+-.++.++++++...+..--.
T Consensus        89 ~GAl~g~l~DvGIdDdFik~l~~ti~pG~sALF-vLi~k~t~DKVl~~~~g~~g~vlrT  146 (170)
T COG4803          89 SGALSGSLTDVGIDDDFIKELGETIQPGSSALF-VLISKMTEDKVLADLSGFGGTVLRT  146 (170)
T ss_pred             HHHHCCCEEECCCCHHHHHHHHHHCCCCCEEEE-EEEECCCHHHHHHHHHCCCCEEEEC
T ss_conf             512034200037677899999841699974799-8742256677999864458789871


No 172
>cd00292 EF1B Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain. EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl tRNA to the ribosome. The guanine nucleotide exchange domain of EF1B, which is the alpha subunit in yeast, is responsible for the catalysis of this exchange reaction.
Probab=22.07  E-value=75  Score=14.82  Aligned_cols=61  Identities=20%  Similarity=0.135  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEE--ECC-CCCHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf             8899989973699632277421478981899999--478-8998999998649882999999974
Q 537021.9.peg.3   37 VVFVGNILGEYGINIAHFHLGRSQSTEHAISFLC--IDG-SILNSVLEKLSVNVTIRFVKQFEFN   98 (100)
Q Consensus        37 I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~--vD~-~i~~~vl~~i~~~~~v~~vr~i~~~   98 (100)
                      -..|-.++- .|..+..+..---.-|=.++.+..  -|. --++++-++|.+.++|.++-...|+
T Consensus        23 ~~~Ik~i~~-~gl~~~~~k~ePiafGLk~L~i~~vveD~~g~~D~lee~i~~~d~Vqsvei~~~~   86 (88)
T cd00292          23 EEKIRAILM-DGLLWGKSKLEPIAFGLKALQIYCVVEDDEGGTDELEEAISEEDGVQSVDVEAFN   86 (88)
T ss_pred             HHHHHHHCC-CCCEEEEEEEEEEEEEEEEEEEEEEEEECCCCHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf             999997576-8858989999984216579999999980873779999998466994189999987


No 173
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=21.41  E-value=77  Score=14.75  Aligned_cols=46  Identities=24%  Similarity=0.411  Sum_probs=30.3

Q ss_pred             CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHH
Q ss_conf             8786688999899736996322774214789818999994788998999998
Q 537021.9.peg.3   32 DILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKL   83 (100)
Q Consensus        32 D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i   83 (100)
                      ...|...++-++|.++++.+..+..+-     ..++ +-+|.+..++.++++
T Consensus        12 ~~~GF~~~v~~il~~~~isv~~i~t~~-----~svs-~~l~~~~~~~~l~~l   57 (62)
T cd04890          12 GEVGFLRKIFEILEKHGISVDLIPTSE-----NSVT-LYLDDSLLPKKLKRL   57 (62)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEECCC-----CEEE-EEECCCCCHHHHHHH
T ss_conf             326558999999998199879870664-----3799-998210120579999


No 174
>pfam11110 Phage_hub_GP28 Baseplate hub distal subunit. These baseplate proteins are also referred to as Gp28. Gp28 is the structural component of the central part of the bacteriophage T4 baseplate, which possesses a hydrophobic region and is membrane bound. Gp28 forms a complex with gp27 which is another structural component of the baseplate.
Probab=20.81  E-value=80  Score=14.68  Aligned_cols=45  Identities=9%  Similarity=0.032  Sum_probs=36.8

Q ss_pred             CCCCEEEEEEECCE-----------EEEEECCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             55873789997998-----------9976579839999982878668899989973
Q 537021.9.peg.3    2 FSDGKPRFIKIQEI-----------NFDVDIGRLMICIVNADILGIVVFVGNILGE   46 (100)
Q Consensus         2 fg~g~~riv~i~g~-----------~v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~   46 (100)
                      |.|.-....++|||           +.||...|++..++..-.---...+..+|+.
T Consensus        48 FN~klkt~~~~dG~t~~lddvYic~~~EFq~~Gktf~Fk~p~~~d~f~~~~d~Ls~  103 (151)
T pfam11110        48 FNGKLKTVQEKDGFTYDLDDVYICQRTEFQFQGKTFYFKPPMKTDTFVSKSDILSK  103 (151)
T ss_pred             HCCCCCEEEEECCEEEECCCEEEEEEEEEEECCEEEEECCCCCCCCCCCHHHHHHH
T ss_conf             64836716853686776370789888899975808985497643554528999998


Done!