Query 537021.9.peg.33_1 Match_columns 100 No_of_seqs 109 out of 961 Neff 6.6 Searched_HMMs 33803 Date Sun May 22 16:17:35 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_33.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1ygy_A PGDH, D-3-phosphoglyce 99.8 2.1E-19 6.3E-24 122.8 10.4 77 22-98 1-77 (77) 2 >3k5p_A D-3-phosphoglycerate d 99.8 6.8E-19 2E-23 120.1 7.4 83 13-95 1-83 (84) 3 >1sc6_A PGDH, D-3-phosphoglyce 99.7 9.7E-18 2.9E-22 114.1 7.5 79 17-95 3-82 (83) 4 >2fgc_A Acetolactate synthase, 99.3 1.8E-11 5.2E-16 81.1 8.3 80 17-96 23-104 (106) 5 >2pc6_A Probable acetolactate 99.3 1.1E-11 3.3E-16 82.1 7.1 74 22-95 3-78 (80) 6 >2f1f_A Acetolactate synthase 99.2 4.3E-11 1.3E-15 79.0 7.0 74 22-95 2-77 (79) 7 >2ko1_A CTR148A, GTP pyrophosp 99.2 1.1E-10 3.2E-15 76.9 7.4 74 24-97 6-80 (88) 8 >2jhe_A Transcription regulato 98.3 1E-06 3E-11 55.9 6.0 70 25-97 2-72 (73) 9 >2nyi_A Unknown protein; prote 98.3 3.8E-06 1.1E-10 52.9 7.7 70 21-90 3-72 (84) 10 >1zpv_A ACT domain protein; st 98.2 6.4E-06 1.9E-10 51.7 8.1 66 22-87 4-70 (91) 11 >1y7p_A Hypothetical protein A 98.2 1.3E-05 3.7E-10 50.2 9.0 70 25-94 6-78 (83) 12 >3lou_A Formyltetrahydrofolate 98.1 8.5E-06 2.5E-10 51.1 6.4 68 19-86 6-79 (93) 13 >2nyi_A Unknown protein; prote 98.1 8.4E-06 2.5E-10 51.1 6.0 64 23-86 9-78 (111) 14 >2f06_A Conserved hypothetical 97.8 3.8E-05 1.1E-09 47.7 5.8 53 28-84 2-54 (59) 15 >1u8s_A Glycine cleavage syste 97.8 0.00014 4.2E-09 44.7 8.3 65 22-86 6-79 (106) 16 >1u8s_A Glycine cleavage syste 97.7 4E-05 1.2E-09 47.5 4.4 63 22-86 5-69 (86) 17 >2qmw_A PDT, prephenate dehydr 97.4 0.0014 4.2E-08 39.4 8.9 71 24-95 111-185 (189) 18 >1phz_A Protein (phenylalanine 96.5 0.0066 1.9E-07 35.9 5.8 65 22-86 33-101 (131) 19 >2re1_A Aspartokinase, alpha a 95.4 0.038 1.1E-06 31.8 5.7 60 27-87 6-65 (78) 20 >2dtj_A Aspartokinase; protein 94.9 0.044 1.3E-06 31.5 4.7 72 26-97 5-77 (80) 21 >2dt9_A Aspartokinase; protein 94.1 0.053 1.6E-06 31.1 3.7 60 26-85 5-65 (79) 22 >2qmx_A Prephenate dehydratase 92.0 0.0019 5.6E-08 38.7 -6.4 65 22-86 9-78 (95) 23 >2f06_A Conserved hypothetical 88.9 1.7 5.1E-05 23.1 6.6 65 25-93 8-72 (86) 24 >1zhv_A Hypothetical protein A 87.6 1.1 3.2E-05 24.2 4.8 68 6-86 3-71 (84) 25 >3c1m_A Probable aspartokinase 82.5 0.77 2.3E-05 25.0 2.1 49 31-83 12-60 (82) 26 >2j0w_A Lysine-sensitive aspar 82.2 0.69 2E-05 25.2 1.8 39 31-72 12-50 (78) 27 >1tdj_A Biosynthetic threonine 66.9 7.9 0.00023 19.6 3.9 69 16-86 91-160 (179) 28 >2jsx_A Protein NAPD; TAT, pro 63.9 12 0.00035 18.7 4.6 62 31-96 13-76 (95) 29 >1zvp_A Hypothetical protein V 50.9 12 0.00035 18.7 2.6 27 30-56 36-62 (88) 30 >1vbk_A Hypothetical protein P 50.4 17 0.00051 17.8 3.4 31 68-98 50-80 (83) 31 >1qlm_A Methenyltetrahydrometh 40.4 30 0.00089 16.6 3.8 30 59-88 99-128 (142) 32 >2cdq_A Aspartokinase; asparta 35.5 0.48 1.4E-05 26.0 -6.5 28 31-58 12-39 (79) 33 >2cfx_A HTH-type transcription 32.5 41 0.0012 15.9 4.8 33 64-96 11-43 (89) 34 >2cyy_A Putative HTH-type tran 32.4 41 0.0012 15.9 4.5 67 26-94 12-78 (94) 35 >2dtj_A Aspartokinase; protein 31.6 33 0.00096 16.4 2.3 41 30-75 25-65 (98) 36 >2zbc_A 83AA long hypothetical 30.8 44 0.0013 15.7 4.3 60 31-94 9-71 (83) 37 >1gh8_A Translation elongation 30.1 45 0.0013 15.7 3.9 52 47-98 32-86 (89) 38 >1i1g_A Transcriptional regula 29.8 45 0.0013 15.6 3.3 65 26-94 12-79 (87) 39 >2re1_A Aspartokinase, alpha a 29.2 47 0.0014 15.6 3.0 28 30-57 35-62 (89) 40 >2c5s_A THII, probable thiamin 27.4 50 0.0015 15.4 2.9 66 26-95 23-88 (182) 41 >2e1c_A Putative HTH-type tran 26.0 54 0.0016 15.2 4.4 67 26-94 12-78 (94) 42 >2cvi_A 75AA long hypothetical 25.6 55 0.0016 15.2 4.4 60 31-94 9-71 (83) 43 >2nzc_A Hypothetical protein; 22.4 63 0.0019 14.9 5.8 63 28-91 12-77 (86) 44 >3cjs_B 50S ribosomal protein 21.1 40 0.0012 15.9 1.2 16 39-54 22-37 (72) 45 >2hza_A Nickel-responsive regu 20.6 69 0.002 14.7 7.9 75 23-99 28-105 (107) No 1 >>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosynthesis, structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} (A:453-529) Probab=99.81 E-value=2.1e-19 Score=122.80 Aligned_cols=77 Identities=19% Similarity=0.280 Sum_probs=74.9 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEEE Q ss_conf 98399999828786688999899736996322774214789818999994788998999998649882999999974 Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEFN 98 (100) Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i~~~ 98 (100) ++|+|++.|+|+|||||+|+++|+++++||++|.++|.++++.|++++++|++++++++++|++++++.+++++++. T Consensus 1 e~~~i~~~~~d~pGvla~I~~il~~~~vNI~~~~~~~~~~~~~a~~~i~~d~~~~~~i~~~i~~l~~v~~v~~i~l~ 77 (77) T 1ygy_A 1 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYKLEVVDLS 77 (77) T ss_dssp CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSCCCHHHHHHHHHHHTEEEEEEEECC T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEECCEEECCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEECC T ss_conf 87689998278698689999998757978603787226889768999996899999999998648796189999529 No 2 >>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infectious disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} (A:333-416) Probab=99.77 E-value=6.8e-19 Score=120.14 Aligned_cols=83 Identities=14% Similarity=0.057 Sum_probs=79.8 Q ss_pred CCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEE Q ss_conf 99899765798399999828786688999899736996322774214789818999994788998999998649882999 Q 537021.9.peg.3 13 QEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFV 92 (100) Q Consensus 13 ~g~~v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~v 92 (100) +.+++++.+++++|.+.|+|+||++|+|+++|+++++||++|.+++..+++.|++++++|++..++++++|++++++.+| T Consensus 1 P~~~~~~~~~~~~l~i~~~d~pGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~i~i~~d~~~~~~i~~~l~~l~~V~~v 80 (84) T 3k5p_A 1 PQVQLPPRPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEADGVGEASDAVLQEIREIPGTIRA 80 (84) T ss_dssp CCCCCCCCSSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEECCCHHHHHHHHHHHHTSTTEEEE T ss_pred CCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEEE T ss_conf 86247877888549985035125999999999876998788640255746699998236776569999999718888999 Q ss_pred EEE Q ss_conf 999 Q 537021.9.peg.3 93 KQF 95 (100) Q Consensus 93 r~i 95 (100) +++ T Consensus 81 ~~i 83 (84) T 3k5p_A 81 RLL 83 (84) T ss_dssp EEE T ss_pred EEE T ss_conf 874 No 3 >>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} (A:322-404) Probab=99.72 E-value=9.7e-18 Score=114.06 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=74.0 Q ss_pred EEEE-CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEE Q ss_conf 9765-798399999828786688999899736996322774214789818999994788998999998649882999999 Q 537021.9.peg.3 17 FDVD-IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQF 95 (100) Q Consensus 17 v~~~-~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i 95 (100) +++. +++|+|.+.|+|+||+||+|+++|+++++||++|.+++.+.++.|++.+++|.+.+++++++|+++++|.+|+.+ T Consensus 3 v~~~~~~~~~l~i~~~D~pGvla~Is~~l~~~~iNI~~~~~~~~~~~~~a~i~i~vd~~~~~~i~~~l~~l~~V~~V~~l 82 (83) T 1sc6_A 3 VSLPLHGGRRLXHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQXGYVVIDIEADEDVAEKALQAXKAIPGTIRARLL 82 (83) T ss_dssp CCCCCCSSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC T ss_pred ECCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCEEEEEEE T ss_conf 03555787489998358776689999999876998799753677545699999844787549999999738988999860 No 4 >>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima MSB8} (A:1-106) Probab=99.27 E-value=1.8e-11 Score=81.06 Aligned_cols=80 Identities=15% Similarity=0.212 Sum_probs=70.0 Q ss_pred EEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEE--EECCCCCHHHHHHHHCCCCEEEEEE Q ss_conf 97657983999998287866889998997369963227742147898189999--9478899899999864988299999 Q 537021.9.peg.3 17 FDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFL--CIDGSILNSVLEKLSVNVTIRFVKQ 94 (100) Q Consensus 17 v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii--~vD~~i~~~vl~~i~~~~~v~~vr~ 94 (100) .+-....|+|-+...|+||++++|+++|+++|+||.++...+...++.+.+++ ..|....+.++++|+++++|.+|.. T Consensus 23 ~~~~~~~~~lri~v~d~pGvLa~It~vl~~~gvnI~si~~~~~~~~~~~~~~i~~~~~~~~l~~~i~~l~kl~~V~~V~r 102 (106) T 2fgc_A 23 XTDQIREHLVSXLVHNKPGVXRKVANLFARRGFNISSITVGESETPGLSRLVIXVKGDDKTIEQIEKQAYKLVEVVKVTP 102 (106) T ss_dssp ----CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEE T ss_pred CCCHHHEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEE T ss_conf 34600289999999788789999999986268572578863566787479999997798999999999854227687664 Q ss_pred EE Q ss_conf 99 Q 537021.9.peg.3 95 FE 96 (100) Q Consensus 95 i~ 96 (100) ++ T Consensus 103 i~ 104 (106) T 2fgc_A 103 ID 104 (106) T ss_dssp CC T ss_pred EC T ss_conf 00 No 5 >>2pc6_A Probable acetolactate synthase isozyme III (small subunit); regulatory subunit, structural genomics, PSI; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} (A:1-80) Probab=99.27 E-value=1.1e-11 Score=82.14 Aligned_cols=74 Identities=12% Similarity=0.217 Sum_probs=65.6 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEE--EEEECCCCCHHHHHHHHCCCCEEEEEEE Q ss_conf 9839999982878668899989973699632277421478981899--9994788998999998649882999999 Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAIS--FLCIDGSILNSVLEKLSVNVTIRFVKQF 95 (100) Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~--ii~vD~~i~~~vl~~i~~~~~v~~vr~i 95 (100) ..|+|-+..+|+||++++|+++|+++|+||.+|...+...++.+.+ +...|+..-++++++|+++++|.+|+.+ T Consensus 3 ~k~~i~i~~~d~pGvLa~It~ifa~~ginI~si~~~~~~~~~~~~~~i~~~~~e~~l~~~i~~l~kl~~V~~V~~~ 78 (80) T 2pc6_A 3 XRHIISLLXENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRXTLVTNGPDEIVEQITKQLNKLIEVVKLIDL 78 (80) T ss_dssp EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEG T ss_pred CEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEECC T ss_conf 4499999998775799999999862575556888603368986899999968788999999999557575575245 No 6 >>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} (A:1-79) Probab=99.20 E-value=4.3e-11 Score=79.03 Aligned_cols=74 Identities=15% Similarity=0.212 Sum_probs=66.1 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEE--ECCCCCHHHHHHHHCCCCEEEEEEE Q ss_conf 9839999982878668899989973699632277421478981899999--4788998999998649882999999 Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLC--IDGSILNSVLEKLSVNVTIRFVKQF 95 (100) Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~--vD~~i~~~vl~~i~~~~~v~~vr~i 95 (100) ..++|-+...|+||++++|+++|+++++||.+|+..+...++...+++. .|..-.+.++++|+++++|.+|+.+ T Consensus 2 ~~~~i~i~~~d~pGvLa~It~v~~~~~vNI~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~i~~V~~V~ri 77 (79) T 2f1f_A 2 ARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSEL 77 (79) T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEG T ss_pred CEEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCCEEEECC T ss_conf 6599999997786799999999860675556888603368976899999856989999999999617473052238 No 7 >>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A (A:) Probab=99.15 E-value=1.1e-10 Score=76.89 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=63.3 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE-CCCCCHHHHHHHHCCCCEEEEEEEEE Q ss_conf 399999828786688999899736996322774214789818999994-78899899999864988299999997 Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI-DGSILNSVLEKLSVNVTIRFVKQFEF 97 (100) Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v-D~~i~~~vl~~i~~~~~v~~vr~i~~ 97 (100) -+|.+.+.|+||++++|+++|+++++||.+|.+.+........+.+++ |.+-.+.++++|+++++|.+|+.+.- T Consensus 6 ~~l~v~~~DrpGlL~~It~~la~~~inI~~i~~~~~~~~~~~~~~v~v~d~~~l~~ii~~l~~i~~V~~V~r~~~ 80 (88) T 2ko1_A 6 AGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSN 80 (88) T ss_dssp EEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEECS T ss_pred EEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEEEECCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEEEE T ss_conf 999999966878899999999987982999999826998999999999999999999999977999878999861 No 8 >>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protein, nucleotide-binding, transcription regulation, activator, repressor; HET: PG4; 2.3A {Escherichia coli} (A:1-73) Probab=98.34 E-value=1e-06 Score=55.95 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=54.0 Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE-CCCCCHHHHHHHHCCCCEEEEEEEEE Q ss_conf 99999828786688999899736996322774214789818999994-78899899999864988299999997 Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI-DGSILNSVLEKLSVNVTIRFVKQFEF 97 (100) Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v-D~~i~~~vl~~i~~~~~v~~vr~i~~ 97 (100) .|-+.-.|+||+++.|++++++.++||.++...+ . +.-...+++ |..--+.++.+|+++|||.+|+-+.+ T Consensus 2 ri~I~~~Dr~GlL~dI~~vis~~~~nI~~~~~~~--~-~~i~l~iev~~~~~L~~ii~~L~~i~gV~~V~Rv~~ 72 (73) T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDP--I-GRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPW 72 (73) T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEET--T-TEEEEEECCCCHHHHHHHHHHHHHSTTEEEEEEESC T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEC--C-CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 0799831015449999999986695499999724--6-419993344465789999999998750656653333 No 9 >>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} (A:1-84) Probab=98.27 E-value=3.8e-06 Score=52.94 Aligned_cols=70 Identities=11% Similarity=0.083 Sum_probs=62.1 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEE Q ss_conf 7983999998287866889998997369963227742147898189999947889989999986498829 Q 537021.9.peg.3 21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIR 90 (100) Q Consensus 21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~ 90 (100) +..+.|.+.-.|+||+++.|+++|+++|+||...+.......+..+|.++.+.+-.+++.++|+++..-. T Consensus 3 ~~~~vltv~g~DrpGiva~vt~~la~~g~NI~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~L~~l~~~~ 72 (84) T 2nyi_A 3 TQSFVVSVAGSDRVGIVHDFSWALKNISANVESSRXACLGGDFAXIVLVSLNAKDGKLIQSALESALPGF 72 (84) T ss_dssp CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSSSSHHHHHHHHHHSTTC T ss_pred CEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCEEEEEEEECCCHHHHHHHHHHHHHHHCC T ss_conf 4499999992698889999999999879989975618970756888763024304667899999986226 No 10 >>1zpv_A ACT domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Streptococcus pneumoniae TIGR4} (A:) Probab=98.23 E-value=6.4e-06 Score=51.74 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=55.5 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC-HHHHHHHHCCC Q ss_conf 9839999982878668899989973699632277421478981899999478899-89999986498 Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL-NSVLEKLSVNV 87 (100) Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~-~~vl~~i~~~~ 87 (100) ....|.+.-.|+||+++.++.+|+++|+||...+...........|.+++..+.+ +++.+++.++. T Consensus 4 ~~~vitv~g~DrpGiva~vt~~la~~g~NI~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~ 70 (91) T 1zpv_A 4 XKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTXXAVVSSDEKQDFTYLRNEFEAFG 70 (91) T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHHH T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHH T ss_conf 3599999938988799999999998799399805189379518999996699999999999999999 No 11 >>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} (A:1-83) Probab=98.20 E-value=1.3e-05 Score=50.20 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=51.6 Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC---CCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEE Q ss_conf 9999982878668899989973699632277421478---981899999478899899999864988299999 Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS---TEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQ 94 (100) Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~---g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~ 94 (100) +|-+.-.|+||+++.|+++++++++||.++...+... .+.+.+-+.+.-.=.+.+-.-+++++.+..+.. T Consensus 6 ~l~v~~~Dr~G~L~~I~~iia~~~~nI~~i~~~~~~~~~~~~~~~~~~~v~v~~~~~l~~ii~~L~~i~~V~~ 78 (83) T 1y7p_A 6 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKTFDYIIEIEE 78 (83) T ss_dssp EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHTCTTEEEEEE T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEEEE T ss_conf 5899975876559998889986389759998773036677882689999828998999999866996589996 No 12 >>3lou_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia mallei} (A:1-93) Probab=98.09 E-value=8.5e-06 Score=51.11 Aligned_cols=68 Identities=6% Similarity=0.052 Sum_probs=51.4 Q ss_pred EECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC-----CC-HHHHHHHHCC Q ss_conf 65798399999828786688999899736996322774214789818999994788-----99-8999998649 Q 537021.9.peg.3 19 VDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS-----IL-NSVLEKLSVN 86 (100) Q Consensus 19 ~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~-----i~-~~vl~~i~~~ 86 (100) .....+.|.+.-.|+||+++.|+++|+++|+||...+.......+...|.+.++.+ .+ +++.+++.++ T Consensus 6 ~~~~~~vitv~g~Dr~GiVa~vt~~la~~g~NI~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~l~~~l~~~ 79 (93) T 3lou_A 6 QRPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPI 79 (93) T ss_dssp --CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHH T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHH T ss_conf 99972899998999886499999999978999858745348888807898999715885533889999988877 No 13 >>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} (A:85-195) Probab=98.07 E-value=8.4e-06 Score=51.11 Aligned_cols=64 Identities=19% Similarity=0.161 Sum_probs=47.8 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEC--CCCCCEEEEEEEECCCCC----HHHHHHHHCC Q ss_conf 839999982878668899989973699632277421--478981899999478899----8999998649 Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGR--SQSTEHAISFLCIDGSIL----NSVLEKLSVN 86 (100) Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r--~~~g~~A~~ii~vD~~i~----~~vl~~i~~~ 86 (100) .+.+.+.-.|+||+++.|+.+|+++|+||..+...+ ...++..+|.++.+-+.+ +++.+++.++ T Consensus 9 ~~~it~~g~DrpGiva~it~~la~~g~nI~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~L~~l 78 (111) T 2nyi_A 9 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRXGSRVAFPFPLYQEVVTALSRV 78 (111) T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGHHHHHHHHHHH T ss_pred EEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHH T ss_conf 9999999429878999999999976957878777576489888624999999967966279999999999 No 14 >>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein structure initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron vpi-5482} (A:76-134) Probab=97.82 E-value=3.8e-05 Score=47.67 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=42.8 Q ss_pred EEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH Q ss_conf 998287866889998997369963227742147898189999947889989999986 Q 537021.9.peg.3 28 IVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS 84 (100) Q Consensus 28 i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~ 84 (100) +.-.|+||-++++..+|++++|||.+|+..- .++.|++++.+|.+ +...+.|+ T Consensus 2 V~v~D~pG~La~vl~~l~~~~InIeY~Yaf~--~~~~a~~i~r~~d~--~~A~~vL~ 54 (59) T 2f06_A 2 ISCPNVPGALAKVLGFLSAEGVFIEYXYSFA--NNNVANVVIRPSNX--DKCIEVLK 54 (59) T ss_dssp EEEESSTTHHHHHHHHHHHTTCCEEEEEEEE--ETTEEEEEEEESCH--HHHHHHHH T ss_pred ECCCCCCCHHHHHHHHHHHCCCCEEEEEEEC--CCCCEEEEEECCCH--HHHHHHHH T ss_conf 4466786379999999987799918745005--76727999984889--99999999 No 15 >>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} (A:87-192) Probab=97.80 E-value=0.00014 Score=44.67 Aligned_cols=65 Identities=9% Similarity=0.077 Sum_probs=46.5 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC------CCEEEEEEEEC--CCCC-HHHHHHHHCC Q ss_conf 9839999982878668899989973699632277421478------98189999947--8899-8999998649 Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS------TEHAISFLCID--GSIL-NSVLEKLSVN 86 (100) Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~------g~~A~~ii~vD--~~i~-~~vl~~i~~~ 86 (100) ....+.+.-.|+||++++|+++|+++|+||..++...... .+...|.+.++ ...+ +++.+++.++ T Consensus 6 ~~~~i~v~g~DrpGiva~it~~la~~~~nI~~l~~~~~~~~~~~~~~~~f~m~~~~~~p~~~~~~~l~~~l~~l 79 (106) T 1u8s_A 6 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDAL 79 (106) T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHH T ss_pred EEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHH T ss_conf 16999998447068999999999977996668999953677666778579999999759999999999999999 No 16 >>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} (A:1-86) Probab=97.71 E-value=4e-05 Score=47.54 Aligned_cols=63 Identities=24% Similarity=0.246 Sum_probs=48.9 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCC--CHHHHHHHHCC Q ss_conf 983999998287866889998997369963227742147898189999947889--98999998649 Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI--LNSVLEKLSVN 86 (100) Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i--~~~vl~~i~~~ 86 (100) +...|.+.-.|+||+++.|++.|+++|+||....... .++.-.|.+.++.+. .+++.++++.+ T Consensus 5 ~~~vitv~g~DrpGiva~is~~la~~g~nI~~~~~~~--~~~~f~~~~~~~~~~~~~~~l~~~l~~~ 69 (86) T 1u8s_A 5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAM--FGKEFTLLMLISGSPSNITRVETTLPLL 69 (86) T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE--ETTEEEEEEEEEECHHHHHHHHHHHHHH T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEE--ECCCEEEEEEECCCHHHHHHHHHHHHHH T ss_conf 1899999926988599999999998799599858899--8796299998505845667899999998 No 17 >>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureus subsp. aureus MU50, structural genomics; 2.30A {Staphylococcus aureus subsp} (A:1-87,A:166-267) Probab=97.40 E-value=0.0014 Score=39.36 Aligned_cols=71 Identities=20% Similarity=0.200 Sum_probs=52.3 Q ss_pred CEEEEEE-CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCCHHHHHHHHCCC-CEEEEEEE Q ss_conf 3999998-28786688999899736996322774214789--8189999947889989999986498-82999999 Q 537021.9.peg.3 24 LMICIVN-ADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSILNSVLEKLSVNV-TIRFVKQF 95 (100) Q Consensus 24 ~~L~i~~-~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~~~vl~~i~~~~-~v~~vr~i 95 (100) ..|++.- +|+||.+.++-+.+++++||+..... |..++ +.-.-.+++++...+.+.+.++++. ....+|.+ T Consensus 111 tsl~f~l~~d~pGaL~~vL~~F~~~~INLt~IeS-RP~~~~~~~Y~FfiD~eg~~~~~~~~al~~L~~~~~~vkiL 185 (189) T 2qmw_A 111 LXFLITPXHDKPGLLASVLNTFALFNINLSWIES-RPLKTQLGXYRFFVQADSAITTDIKKVIAILETLDFKVEXI 185 (189) T ss_dssp EEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEE-EECSSSTTCEEEEEEESCCSCHHHHHHHHHHHHTTEEEEEE T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCEEEEEEEE-EECCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEE T ss_conf 0133210489860799987789877810699983-10689996289999965789989999999999844937998 No 18 >>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} (A:1-131) Probab=96.49 E-value=0.0066 Score=35.87 Aligned_cols=65 Identities=18% Similarity=0.253 Sum_probs=49.8 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC-EEEEEEEECCCCCH---HHHHHHHCC Q ss_conf 983999998287866889998997369963227742147898-18999994788998---999998649 Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTE-HAISFLCIDGSILN---SVLEKLSVN 86 (100) Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~-~A~~ii~vD~~i~~---~vl~~i~~~ 86 (100) +...|++.-+|+||.++.+-..++++|||+......-..... .-.-.+++++...+ +++++|++. T Consensus 33 ~ktsi~f~l~d~~GaL~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~vd~e~~~~~~~~~~l~~L~~~ 101 (131) T 1phz_A 33 GAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRND 101 (131) T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHT T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH T ss_conf 608999996876158999999999869369996368887888862699998267847899999999987 No 19 >>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, PSI-2, protein structure initiative; 2.75A {Neisseria meningitidis MC58} (A:25-102) Probab=95.44 E-value=0.038 Score=31.84 Aligned_cols=60 Identities=13% Similarity=0.030 Sum_probs=41.0 Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCC Q ss_conf 9998287866889998997369963227742147898189999947889989999986498 Q 537021.9.peg.3 27 CIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNV 87 (100) Q Consensus 27 ~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~ 87 (100) +.--.|+||+.+++-+.|+++||||.-..-+ ....+..-+-+.+.+.--+.+++.|.+.- T Consensus 6 v~gv~~~pGiaa~if~~La~~~InVdmI~Q~-~~~~~~~~isftv~~~d~~~a~~~l~~~~ 65 (78) T 2re1_A 6 VRGVPDKPGVAYQILGAVADANIEVDXIIQN-VGSEGTTDFSFTVPRGDYKQTLEILSERQ 65 (78) T ss_dssp EEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSS T ss_pred EECCCCCCCHHHHHHHHHHHHCCCHHEEEEE-CCCCCCEEEEEEECCCHHHHHHHHHHHHH T ss_conf 9158998427899999998837671104662-15688247999841102577888886531 No 20 >>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} (A:15-94) Probab=94.90 E-value=0.044 Score=31.51 Aligned_cols=72 Identities=15% Similarity=-0.046 Sum_probs=45.5 Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEE-CCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEE Q ss_conf 99998287866889998997369963227742-1478981899999478899899999864988299999997 Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLG-RSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEF 97 (100) Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~-r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i~~ 97 (100) -+.--.|+||+.+++-+.|++++|||.-..-+ +...++..-+-+.+.+.=-+.+++.|.+.-.-.....++. T Consensus 5 ti~gi~~~pgvaa~iF~~La~~~InVdMI~Q~~s~~~~~~~~isftv~~~d~~~a~~~L~~~~~el~~~~i~~ 77 (80) T 2dtj_A 5 TVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLY 77 (80) T ss_dssp EEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHHHHHHHHHHTTTTTTTCSEEEE T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCEEE T ss_conf 9905899860899999999984436223103332112311255304404566666765201113344321687 No 21 >>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A (A:16-94) Probab=94.13 E-value=0.053 Score=31.08 Aligned_cols=60 Identities=22% Similarity=0.176 Sum_probs=36.8 Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEE-CCCCCCEEEEEEEECCCCCHHHHHHHHC Q ss_conf 99998287866889998997369963227742-1478981899999478899899999864 Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLG-RSQSTEHAISFLCIDGSILNSVLEKLSV 85 (100) Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~-r~~~g~~A~~ii~vD~~i~~~vl~~i~~ 85 (100) -+.--.|+||+.+++-+.|++++|||.-..=+ +...++..-.-+.+.+.=-+.+++.|.+ T Consensus 5 sv~g~~~~~g~aa~if~~La~~~InVdmI~Q~~s~~~~~~~~isFtv~~~d~~~A~~~L~~ 65 (79) T 2dt9_A 5 GLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEP 65 (79) T ss_dssp EEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHH T ss_pred EEECCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEECCCHHHHHHHHHHHHHH T ss_conf 9916899865799999999972998013553102345642112114126788888887766 No 22 >>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls} (A:186-280) Probab=91.96 E-value=0.0019 Score=38.73 Aligned_cols=65 Identities=14% Similarity=0.108 Sum_probs=44.8 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-CEEEEEEEECCC----CCHHHHHHHHCC Q ss_conf 98399999828786688999899736996322774214789-818999994788----998999998649 Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST-EHAISFLCIDGS----ILNSVLEKLSVN 86 (100) Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g-~~A~~ii~vD~~----i~~~vl~~i~~~ 86 (100) +..+|++.-.|+||.++++-+.+++++||+......-.... +.-.-.+++++. --++++++|++. T Consensus 9 ~ktsl~f~l~~~pGaL~~vL~~F~~~~iNlt~IeSRP~~~~~~~y~F~vd~eg~~~~~~v~~~l~~L~~~ 78 (95) T 2qmx_A 9 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNVHNALENLREF 78 (95) T ss_dssp CEEEEEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTSHHHHHHHH T ss_pred CCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCHHHHHHHH T ss_conf 8778854999999289997515543578876967689984007899963899999608858899999999 No 23 >>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein structure initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron vpi-5482} (A:1-75,A:135-145) Probab=88.86 E-value=1.7 Score=23.10 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=49.5 Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEE Q ss_conf 999998287866889998997369963227742147898189999947889989999986498829999 Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVK 93 (100) Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr 93 (100) -+-+.-+|++|-+..+..+|.++||+|-+... ....+.++.-+-+|. |+...+.+++........ T Consensus 8 Q~SVFleNk~G~L~~~~~ll~~~~I~i~AlsI--~Dt~d~givRiIvs~--Pe~a~e~L~~~g~av~iT 72 (86) T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCI--AENADFGILRGIVSD--PDKAYKALKDNHFAVNIT 72 (86) T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEE--EECSSCEEEEEEESC--HHHHHHHHHHTTCCEEEE T ss_pred EEEEEECCCCHHHHHHHHHHHHCCCEEEEEEE--ECCCCCCCCCCCCCC--CHHHHHHHHHCCCCEEEE T ss_conf 99999789650999999999986961999997--415677643321111--025678887607713037 No 24 >>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens str} (A:1-11,A:62-134) Probab=87.60 E-value=1.1 Score=24.21 Aligned_cols=68 Identities=18% Similarity=0.103 Sum_probs=42.4 Q ss_pred EEEEEEECCEE-EEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH Q ss_conf 37899979989-97657983999998287866889998997369963227742147898189999947889989999986 Q 537021.9.peg.3 6 KPRFIKIQEIN-FDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS 84 (100) Q Consensus 6 ~~riv~i~g~~-v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~ 84 (100) ++++--+||++ +.+.+.+ -.+.||+++++.+.|++++|+|-..... ... +. -+.+.--+++++.|+ T Consensus 3 ~~~~~~~~~~~~i~v~G~g------~~~~~Gi~a~i~~aLA~agIsV~~ISs~---~sD--~i--lV~~~~~~~Ai~aL~ 69 (84) T 1zhv_A 3 RIKLKILNGWSCFKFQGPF------AFDETGIVLSVISPLSTNGIGIFVVSTF---DGD--HL--LVRSNDLEKTADLLA 69 (84) T ss_dssp CCEEEECSSEEEEEECSCC------CCSSCCHHHHHHHHHHTTTCCCEEEECS---SCE--EE--EEEGGGHHHHHHHHH T ss_pred CCCEEECCCEEEEEEECCC------CCCHHHHHHHHHHHHHHCCCCEEEEEEE---CCC--EE--EEEHHHHHHHHHHHH T ss_conf 6317988985999996467------7313313999989998779966998521---264--89--987778999999999 Q ss_pred CC Q ss_conf 49 Q 537021.9.peg.3 85 VN 86 (100) Q Consensus 85 ~~ 86 (100) +. T Consensus 70 ~~ 71 (84) T 1zhv_A 70 NA 71 (84) T ss_dssp HT T ss_pred HC T ss_conf 88 No 25 >>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT domain, amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A* (A:317-398) Probab=82.45 E-value=0.77 Score=24.96 Aligned_cols=49 Identities=24% Similarity=0.362 Sum_probs=32.5 Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHH Q ss_conf 28786688999899736996322774214789818999994788998999998 Q 537021.9.peg.3 31 ADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKL 83 (100) Q Consensus 31 ~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i 83 (100) .+.||+.+++-+.|++++|||....-+ ..+..+.+ -+++.-.+++++.| T Consensus 12 ~~~~Gv~a~if~~L~~~~InV~mIsq~---~Se~~is~-vV~~~d~~~Av~~L 60 (82) T 3c1m_A 12 VGVSGTAARIFKALGEEEVNVILISQG---SSETNISL-VVSEEDVDKALKAL 60 (82) T ss_dssp SSCHHHHHHHHHHHHHHTTCCEEEEEE---CCTTCCEE-EEEEGGGHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECC---CCCCCCCC-CCCCHHHHHHHHHH T ss_conf 777645799999999875981675035---68755310-13558779999999 No 26 >>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} (A:306-383) Probab=82.23 E-value=0.69 Score=25.22 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=29.7 Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEC Q ss_conf 287866889998997369963227742147898189999947 Q 537021.9.peg.3 31 ADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCID 72 (100) Q Consensus 31 ~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD 72 (100) .+.||+.+++-+.|+++||||.-..-| .-...+.+=+-| T Consensus 12 ~~~~Gi~a~if~~L~~~~InV~mIs~S---e~~Is~~V~~~d 50 (78) T 2j0w_A 12 LHSRGFLAEVFGILARHNISVDLITTS---EVSVALTLDTTG 50 (78) T ss_dssp SCSCHHHHHHHHTTTTTTTTCCCSEEE---EETTEEEEEECC T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCC---CCCCCCCCCCCC T ss_conf 553227606777479998087720135---675332111111 No 27 >>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal phosphate, isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} (A:336-514) Probab=66.91 E-value=7.9 Score=19.64 Aligned_cols=69 Identities=17% Similarity=0.130 Sum_probs=49.3 Q ss_pred EEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCH-HHHHHHHCC Q ss_conf 99765798399999828786688999899736996322774214789818999994788998-999998649 Q 537021.9.peg.3 16 NFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILN-SVLEKLSVN 86 (100) Q Consensus 16 ~v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~-~vl~~i~~~ 86 (100) +.++......+.+.-..+||.+-+.-+.|+. .+||..++- |.+....|-.++.+..+-.+ ++.+.++++ T Consensus 91 n~~~~~~E~~~~v~fPErpGal~~Fl~~l~~-~~nIt~F~Y-R~~g~~~g~vlvGi~~~~~~~~l~~~l~~~ 160 (179) T 1tdj_A 91 RPSHPLQERLYSFEFPESPGALLRFLNTLGT-YWNISLFHY-RSHGTDYGRVLAAFELGDHEPDFETRLNEL 160 (179) T ss_dssp CCSSCCCCEEEEEECCCCTTHHHHHHHHHCS-CCCCCEEEC-BCTTTCSSCEEEEEC--------------- T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHCCC-CCEEEEEEE-CCCCCCCEEEEEEEECCCCHHHHHHHHHHC T ss_conf 7898877159998558996489999986188-864877653-366600203799986596379999999976 No 28 >>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A (A:) Probab=63.91 E-value=12 Score=18.71 Aligned_cols=62 Identities=8% Similarity=0.017 Sum_probs=41.8 Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEE-CCCCCCEEEEEEEECC-CCCHHHHHHHHCCCCEEEEEEEE Q ss_conf 287866889998997369963227742-1478981899999478-89989999986498829999999 Q 537021.9.peg.3 31 ADILGIVVFVGNILGEYGINIAHFHLG-RSQSTEHAISFLCIDG-SILNSVLEKLSVNVTIRFVKQFE 96 (100) Q Consensus 31 ~D~PG~I~~v~~~L~~~~INIa~m~l~-r~~~g~~A~~ii~vD~-~i~~~vl~~i~~~~~v~~vr~i~ 96 (100) .=+|+-+..+...|.+ +....+. ..+..|..+.+++.++ .---+.+++|+++|||.++..+- T Consensus 13 ~~~Pe~~~~V~~~l~~----~~g~Eih~~~~~~GKlVVtiE~~~~~~~~~~i~~I~~l~GVlsa~lvY 76 (95) T 2jsx_A 13 QAKSERISDISTQLNA----FPGCEVAVSDAPSGQLIVVVEAEDSETLIQTIESVRNVEGVLAVSLVY 76 (95) T ss_dssp EECTTSHHHHHHHHTT----STTEEEEEEETTTTEEEEEEEESSHHHHHHHHHHHTTSTTEEEEEESS T ss_pred EECHHHHHHHHHHHHC----CCCCEEEEECCCCCEEEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEE T ss_conf 9688889999999974----899789630388960999997098589999999987699832897648 No 29 >>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Vibrio cholerae} (A:1-22,A:68-133) Probab=50.94 E-value=12 Score=18.68 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=22.8 Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEE Q ss_conf 828786688999899736996322774 Q 537021.9.peg.3 30 NADILGIVVFVGNILGEYGINIAHFHL 56 (100) Q Consensus 30 ~~D~PG~I~~v~~~L~~~~INIa~m~l 56 (100) --|.+|+++.+++.|++++|-|-.... T Consensus 36 ~le~vGilAaIs~~LA~agIsifviST 62 (88) T 1zvp_A 36 SLEAVGLTAAFATKLAEHGISANVIAG 62 (88) T ss_dssp --CCSCHHHHHHHHHHHTTCCCEEEEC T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 421475999998999876998389862 No 30 >>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii OT3} (A:1-77,A:167-172) Probab=50.38 E-value=17 Score=17.82 Aligned_cols=31 Identities=6% Similarity=-0.023 Sum_probs=26.4 Q ss_pred EEEECCCCCHHHHHHHHCCCCEEEEEEEEEE Q ss_conf 9994788998999998649882999999974 Q 537021.9.peg.3 68 FLCIDGSILNSVLEKLSVNVTIRFVKQFEFN 98 (100) Q Consensus 68 ii~vD~~i~~~vl~~i~~~~~v~~vr~i~~~ 98 (100) -+.++.+.++++++.++.++||.++..+.+. T Consensus 50 ri~v~~~~~~~v~~~L~~VfGI~s~spv~~~ 80 (83) T 1vbk_A 50 RIIVKTNSPKEAANVLVRVFGIVSISPAKIK 80 (83) T ss_dssp EEEEECSCHHHHHHHHTTSTTEEEEEEECEE T ss_pred EEEEECCCHHHHHHHHHHCCCCCEEEEEEEE T ss_conf 9999769979999999863797648689760 No 31 >>1qlm_A Methenyltetrahydromethanopterin cyclohydrolase; methanogenesis, biological methanogenesis; 2.0A {Methanopyrus kandleri} (A:1-59,A:90-172) Probab=40.38 E-value=30 Score=16.58 Aligned_cols=30 Identities=17% Similarity=0.049 Sum_probs=24.9 Q ss_pred CCCCCEEEEEEEECCCCCHHHHHHHHCCCC Q ss_conf 478981899999478899899999864988 Q 537021.9.peg.3 59 SQSTEHAISFLCIDGSILNSVLEKLSVNVT 88 (100) Q Consensus 59 ~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~ 88 (100) ......|+.+++.|+.+|+++.+++.+--+ T Consensus 99 ~D~ad~AVLvLEsd~lPpeeV~e~VA~~Cg 128 (142) T 1qlm_A 99 EDDADVAILCLESSELPDEDVAEHVADECG 128 (142) T ss_dssp CCCCSCEEEEEECSSCCCHHHHHHHHHHHT T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHCC T ss_conf 125771799997699989999999999809 No 32 >>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, allostery, S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} (A:317-395) Probab=35.49 E-value=0.48 Score=26.02 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=24.0 Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEEC Q ss_conf 2878668899989973699632277421 Q 537021.9.peg.3 31 ADILGIVVFVGNILGEYGINIAHFHLGR 58 (100) Q Consensus 31 ~D~PG~I~~v~~~L~~~~INIa~m~l~r 58 (100) .++||+.+++-+.|++++|||.....|. T Consensus 12 ~~~~Gv~a~iF~~La~~~InV~~istSe 39 (79) T 2cdq_A 12 LGQVGFLAKVFSIFEELGISVDVVATSE 39 (79) T ss_dssp TTCCEEEEEEEEEEEEEEEECGGGTTCT T ss_pred CCCCCCCHHHCCCEEEEECCCCCCCCCC T ss_conf 4321211000241246411466668876 No 33 >>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} (A:56-144) Probab=32.53 E-value=41 Score=15.88 Aligned_cols=33 Identities=9% Similarity=0.066 Sum_probs=22.3 Q ss_pred EEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEE Q ss_conf 189999947889989999986498829999999 Q 537021.9.peg.3 64 HAISFLCIDGSILNSVLEKLSVNVTIRFVKQFE 96 (100) Q Consensus 64 ~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i~ 96 (100) .|++.+.++..-.+++.++|+++|.|..+-.+. T Consensus 11 ~a~i~i~~~~~~~~~~~~~l~~~peV~~~~~vs 43 (89) T 2cfx_A 11 SCIVEATVKNADYERFKSYIQTLPNIEFCYRIA 43 (89) T ss_dssp EEEEEEEEGGGCHHHHHHHHHTCTTEEEEEEEE T ss_pred EEEEEEEECCCCHHHHHHHHHCCCCCEEEEEEE T ss_conf 058999972487999999872398621668963 No 34 >>2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} (A:58-151) Probab=32.41 E-value=41 Score=15.87 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=34.7 Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEE Q ss_conf 999982878668899989973699632277421478981899999478899899999864988299999 Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQ 94 (100) Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~ 94 (100) .++.=+-.|+-...+...|.+.. ++...+. .......-+.+..-|.+-=++++++|..+|||.+++. T Consensus 12 a~v~i~~~~~~~~~v~~~l~~~p-~V~~~~~-~sG~~d~~~~v~~~d~~~l~~~i~~l~~~~gv~~~~t 78 (94) T 2cyy_A 12 AFILVKVKAGKYSEVASNLAKYP-EIVEVYE-TTGDYDXVVKIRTKNSEELNNFLDLIGSIPGVEGTHT 78 (94) T ss_dssp EEEEEEECTTCHHHHHHHHHTCT-TEEEEEE-CSSSSSEEEEEEESSHHHHHHHHHHHHTSTTEEEEEE T ss_pred EEEEEECCCCCCHHHHHHHCCCC-CEEEEEC-CCCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEEE T ss_conf 99985035532003344404786-3167101-5788769999997999999999999846899408999 No 35 >>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} (A:1-14,A:95-178) Probab=31.61 E-value=33 Score=16.38 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=29.7 Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCC Q ss_conf 8287866889998997369963227742147898189999947889 Q 537021.9.peg.3 30 NADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI 75 (100) Q Consensus 30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i 75 (100) -.--||.++..-..+-+.+|||..|..+- .-+.++.-..++ T Consensus 25 ~~s~p~~~~~~~~~~r~~~~~i~~~sts~-----~r~s~~i~e~~~ 65 (98) T 2dtj_A 25 MKSHPGVTAEFMEALRDVNVNIELISTSE-----IRISVLIREDDL 65 (98) T ss_dssp CTTCHHHHHHHHHHHHHTTCCCCEEEEET-----TEEEEEEEGGGH T ss_pred CCCCCCCCHHHHHHHHHCCCCEEEEECCC-----CEEEEEEEHHHH T ss_conf 45678852089999997899889875477-----779999968999 No 36 >>2zbc_A 83AA long hypothetical transcriptional regulator ASNC; SARD; 1.90A {Sulfolobus tokodaii str} (A:) Probab=30.82 E-value=44 Score=15.72 Aligned_cols=60 Identities=13% Similarity=-0.057 Sum_probs=23.5 Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC--HH-HHHHHHCCCCEEEEEE Q ss_conf 2878668899989973699632277421478981899999478899--89-9999864988299999 Q 537021.9.peg.3 31 ADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL--NS-VLEKLSVNVTIRFVKQ 94 (100) Q Consensus 31 ~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~--~~-vl~~i~~~~~v~~vr~ 94 (100) +=.||-...+...|++.. ++...+ ...|..-+++.-.=...+ .+ +.+.|..+|||.+++. T Consensus 9 ~~~~~~~~~~~~~l~~~p-eV~~~~---~vtG~~D~i~~v~~~d~~~l~~~i~~~l~~~~gV~~~~T 71 (83) T 2zbc_A 9 NTDAGGEDEVFERLKSXS-EVTEVH---VVYGVYDIVVKVEADSXDKLKDFVTNTIRKLPKVRSTLT 71 (83) T ss_dssp EESTTCHHHHHHHHTTCT-TEEEEE---ECSSSCSEEEEEECSSHHHHHHHHHHTGGGSTTEEEEEE T ss_pred EECCCCHHHHHHHHHCCC-CEEEEE---EEECCCEEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 977899999999997697-724899---910876299999999999999999998725999836999 No 37 >>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} (A:) Probab=30.12 E-value=45 Score=15.65 Aligned_cols=52 Identities=10% Similarity=0.017 Sum_probs=36.1 Q ss_pred CCCCEEEEEEECCCCCCEEEEEEEE---CCCCCHHHHHHHHCCCCEEEEEEEEEE Q ss_conf 6996322774214789818999994---788998999998649882999999974 Q 537021.9.peg.3 47 YGINIAHFHLGRSQSTEHAISFLCI---DGSILNSVLEKLSVNVTIRFVKQFEFN 98 (100) Q Consensus 47 ~~INIa~m~l~r~~~g~~A~~ii~v---D~~i~~~vl~~i~~~~~v~~vr~i~~~ 98 (100) .|.-+......--.-|=.|+.+..+ |.--++++.+.|.++++|.++-..+|+ T Consensus 32 ~g~~~~~~~~epiafGlk~L~i~~vv~Dd~~~~D~lee~i~~~e~VqsveI~~~~ 86 (89) T 1gh8_A 32 EGTELHKIDEEPIAFGLVALNVMVVVGDAEGGTEAAEESLSGIEGVSNIEVTDVR 86 (89) T ss_dssp TTSEECCCCEEECSSSCEEEEEEEEESSSCGGGGHHHHHHTTSCSSEEEEEEEEE T ss_pred CCCHHHEEEECCHHHHHEEEEEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEEEE T ss_conf 6212222450414520044899999844887635899987525785449988735 No 38 >>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} (A:55-141) Probab=29.83 E-value=45 Score=15.62 Aligned_cols=65 Identities=14% Similarity=0.019 Sum_probs=31.5 Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC--HHHH-HHHHCCCCEEEEEE Q ss_conf 999982878668899989973699632277421478981899999478899--8999-99864988299999 Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL--NSVL-EKLSVNVTIRFVKQ 94 (100) Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~--~~vl-~~i~~~~~v~~vr~ 94 (100) .++.=+=.|+-+..+...|.+.. ++...+ ...|..-+++.-.=.... ++.+ +.|+.+|++.+++. T Consensus 12 a~i~i~~~~~~~~~~~~~l~~~p-~V~~~~---~vtG~~d~i~~v~~~~~~~l~~~i~~~l~~~~gv~~~~T 79 (87) T 1i1g_A 12 TITGVDTKPEKLFEVAEKLKEYD-FVKELY---LSSGDHMIMAVIWAKDGEDLAEIISNKIGKIEGVTKVCP 79 (87) T ss_dssp EEEEEEECGGGHHHHHHHHHHST-TEEEEC---CCSSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEE T ss_pred EEEEEECCCCHHHHHHHHHCCCC-CEEEEE---EEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 99996225302677777622797-189988---863799899999989999999999998635999738999 No 39 >>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, PSI-2, protein structure initiative; 2.75A {Neisseria meningitidis MC58} (A:1-24,A:103-167) Probab=29.23 E-value=47 Score=15.57 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=23.8 Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEEE Q ss_conf 8287866889998997369963227742 Q 537021.9.peg.3 30 NADILGIVVFVGNILGEYGINIAHFHLG 57 (100) Q Consensus 30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~ 57 (100) .+-..|+-+++-..|++.||||.....+ T Consensus 35 ~rshvgvaakifrtlaeeginiq~ists 62 (89) T 2re1_A 35 XRSHVGVAAKIFRTLAEEGINIQXISTS 62 (89) T ss_dssp CTTCCCHHHHHHHHHHHTTCCCCEEEEC T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 3332357779999999779977999926 No 40 >>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} (A:1-182) Probab=27.40 E-value=50 Score=15.39 Aligned_cols=66 Identities=11% Similarity=0.064 Sum_probs=45.7 Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEE Q ss_conf 9999828786688999899736996322774214789818999994788998999998649882999999 Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQF 95 (100) Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i 95 (100) |.+..+++||+...+..-+-+.-=.+....+.+ ....+.++++.+.++++.+.++..++|.++..+ T Consensus 23 i~lKg~nr~~fE~~L~~ni~~~L~~~~~~~v~~----~~gri~v~~~~~~~~~~~~~l~~~~gI~~~~~~ 88 (182) T 2c5s_A 23 MTTKGKNRSKFVSTLKDNVKFKLKKFPNIKIDA----THDRMYIQLNGEDHEAVSERLKDVFGIHKFNLA 88 (182) T ss_dssp C---CHHHHHHHHHHHHHHHHHTTTSTTCEEEE----CSSCEEEECTTCCHHHHHHHHTTCTTEEEEEEE T ss_pred EEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEE----EECEEEEEECCCCHHHHHHHHHCCCCCCEEEEE T ss_conf 044473799999999999999998589815999----918899996777989999996058982569999 No 41 >>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} (A:78-171) Probab=26.02 E-value=54 Score=15.25 Aligned_cols=67 Identities=13% Similarity=0.087 Sum_probs=35.9 Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEE Q ss_conf 999982878668899989973699632277421478981899999478899899999864988299999 Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQ 94 (100) Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~ 94 (100) .++.=+=.|+-+..+...+.+.. +|...+. .......-+.+..-|..-=++++++|..+||+.+++. T Consensus 12 a~v~i~v~~~~~~~~~~~l~~~p-~V~~~~~-~sG~~dl~~~v~~~~~~~l~~~i~~l~~~~gv~~~~t 78 (94) T 2e1c_A 12 AFILVKVKAGKYSEVASNLAKYP-EIVEVYE-TTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHT 78 (94) T ss_dssp EEEEEEECTTCHHHHHHHHHTST-TEEEEEE-CSSSSSEEEEEEESSHHHHHHHHHHHHHSTTEEEEEE T ss_pred EEEEECCCCCHHHHHHHHHCCCC-CEEEEEC-CCCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEEE T ss_conf 99985045410223345414797-4788401-5788869999997999999999999846899408999 No 42 >>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii OT3} PDB: 2z4p_A 2e1a_A (A:) Probab=25.60 E-value=55 Score=15.20 Aligned_cols=60 Identities=13% Similarity=-0.024 Sum_probs=24.0 Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEE--EEECCCCCHHHH-HHHHCCCCEEEEEE Q ss_conf 28786688999899736996322774214789818999--994788998999-99864988299999 Q 537021.9.peg.3 31 ADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISF--LCIDGSILNSVL-EKLSVNVTIRFVKQ 94 (100) Q Consensus 31 ~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~i--i~vD~~i~~~vl-~~i~~~~~v~~vr~ 94 (100) +=.|+-...+.+.|.+.. +|-..+. ..|..-+++ ..-|.+==++.+ ++|.++|||.+++. T Consensus 9 ~~~~~~~~~~~~~l~~~p-eV~~~~~---vtG~~D~~~~v~~~d~~~l~~~i~~~l~~~~gV~~~~T 71 (83) T 2cvi_A 9 VTAAGKEREVMEKLLAMP-EVKEAYV---VYGEYDLIVKVETDTLKDLDQFITEKIRKMPEIQMTST 71 (83) T ss_dssp EECTTCHHHHHHHHHTST-TEEEEEE---CBSSCSEEEEEEESSHHHHHHHHHTTGGGCTTEEEEEE T ss_pred EECCCCHHHHHHHHHCCC-CEEEEEE---ECCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 977899999999997699-9888989---70889999999989999999999998645999817999 No 43 >>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative; 1.95A {Thermotoga maritima MSB8} (A:) Probab=22.36 E-value=63 Score=14.86 Aligned_cols=63 Identities=21% Similarity=0.187 Sum_probs=44.4 Q ss_pred EEECCCCCHHHHHHHHHHHCCCCEE-EEEEECCCCCCEEEEEEEECCCCC--HHHHHHHHCCCCEEE Q ss_conf 9982878668899989973699632-277421478981899999478899--899999864988299 Q 537021.9.peg.3 28 IVNADILGIVVFVGNILGEYGINIA-HFHLGRSQSTEHAISFLCIDGSIL--NSVLEKLSVNVTIRF 91 (100) Q Consensus 28 i~~~D~PG~I~~v~~~L~~~~INIa-~m~l~r~~~g~~A~~ii~vD~~i~--~~vl~~i~~~~~v~~ 91 (100) +.-+|+--...+|..+|.+++.+|- .|-+.-.. .+.++..+.+|.+-+ .++-.+|.++|+|.- T Consensus 12 Iive~r~~~a~kvneiL~~y~~~I~gRmGiP~~~-~~v~iIsl~v~g~~d~I~aLtgkLg~i~gV~v 77 (86) T 2nzc_A 12 IVVEDREKAYRQVNELLHNFSEDILLRVGYPVRE-ENXAIIFLVLKTDNDTIGALSGKLGQISGVRV 77 (86) T ss_dssp EEEESCHHHHHHHHHHHHHTGGGEEEEEEEEEGG-GTEEEEEEEEEECHHHHHHHHHHHHTSTTEEE T ss_pred EEEECHHHHHHHHHHHHHHCCCEEEEECCCCCCC-CCCEEEEEEEECCHHHHHHHHHHHCCCCCEEE T ss_conf 9995858868999999987688789864787054-79159999998888799998876369998899 No 44 >>3cjs_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus} (B:) Probab=21.07 E-value=40 Score=15.89 Aligned_cols=16 Identities=50% Similarity=0.727 Sum_probs=14.1 Q ss_pred HHHHHHHHCCCCEEEE Q ss_conf 9998997369963227 Q 537021.9.peg.3 39 FVGNILGEYGINIAHF 54 (100) Q Consensus 39 ~v~~~L~~~~INIa~m 54 (100) .+|..||..||||..+ T Consensus 22 piGp~LG~~GiNi~~F 37 (72) T 3cjs_B 22 PVGPALGQHGANIMEF 37 (72) T ss_dssp THHHHHHTTTCCHHHH T ss_pred CCCCCCCCCCCCHHHH T ss_conf 9773002368789999 No 45 >>2hza_A Nickel-responsive regulator; nickel-binding, ribbon-helix-helix, transcription factor, metal binding protein; HET: 3CM; 2.10A {Escherichia coli} (A:27-133) Probab=20.62 E-value=69 Score=14.66 Aligned_cols=75 Identities=5% Similarity=0.107 Sum_probs=54.9 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHC-CCCEEEEEEECCCCCCEEEEEEEECCCCC--HHHHHHHHCCCCEEEEEEEEEEC Q ss_conf 8399999828786688999899736-99632277421478981899999478899--89999986498829999999744 Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEY-GINIAHFHLGRSQSTEHAISFLCIDGSIL--NSVLEKLSVNVTIRFVKQFEFNV 99 (100) Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~-~INIa~m~l~r~~~g~~A~~ii~vD~~i~--~~vl~~i~~~~~v~~vr~i~~~~ 99 (100) |...++....++++-.+++.+--++ ++=++++++ .-..+..+-++-+.++.. .++.++|.++.||..+++.-.-. T Consensus 28 G~i~~vydh~~~~l~~~l~~iqH~~~~~I~s~~Hv--hld~~~ClEv~vv~G~~~~I~~l~~~l~~~kGV~~~~L~~~~~ 105 (107) T 2hza_A 28 AVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHV--HINHDDCLEIAVLKGDXGDVQHFADDVIAQRGVRHGHLQCLPK 105 (107) T ss_dssp EEEEEEEESSTTSHHHHHHHHHHHTTTTEEEEEEE--ECSSSEEEEEEEEEEEHHHHHHHHHHHHHSTTEEEEEEEEEEC T ss_pred EEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEEE--ECCCCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEEEEEC T ss_conf 99999996786238899999886152539999888--6278826999999736999999999985559916999998226 Done!