RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= 537021.9.peg.33_1
(100 letters)
>gnl|CDD|184162 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase;
Provisional.
Length = 526
Score = 89.4 bits (223), Expect = 2e-19
Identities = 36/97 (37%), Positives = 49/97 (50%)
Query: 1 VFSDGKPRFIKIQEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQ 60
VF DG+PR ++I D M+ I N D G++ VG +LGE GINIA LGR +
Sbjct: 430 VFGDGEPRIVEIDGYRVDAKPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRRE 489
Query: 61 STEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEF 97
+ A+ L +D + VLE+L I K E
Sbjct: 490 AGGEALMVLSVDDPVPEEVLEELRALPGILSAKAVEL 526
>gnl|CDD|162302 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase. This model
represents a long form of D-3-phosphoglycerate
dehydrogenase, the serA gene of one pathway of serine
biosynthesis. Shorter forms, scoring between trusted and
noise cutoff, include SerA from E. coli.
Length = 525
Score = 63.9 bits (156), Expect = 1e-11
Identities = 30/97 (30%), Positives = 50/97 (51%)
Query: 1 VFSDGKPRFIKIQEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQ 60
VF PR ++I + D++ +M+ I++ D G++ VG +LG GINIA LGR +
Sbjct: 429 VFGGFSPRIVEIDGFHVDLEPEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKE 488
Query: 61 STEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEF 97
A+ L +D + + VLE++ I V +
Sbjct: 489 KGGEALMLLSLDQPVPDEVLEEIKAIPDILSVFVVDL 525
>gnl|CDD|129802 TIGR00719, sda_beta, L-serine dehydratase, iron-sulfur-dependent,
beta subunit. This family of enzymes is not homologous
to the pyridoxal phosphate-dependent threonine
deaminases and eukaryotic serine deaminases.
Length = 208
Score = 29.1 bits (65), Expect = 0.24
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKL 83
I + + D G + V N+L + INI H + A+ + ID +I + + + +
Sbjct: 151 ILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDAI 208
>gnl|CDD|172978 PRK14507, PRK14507, putative bifunctional
4-alpha-glucanotransferase/malto-oligosyltrehalose
synthase; Provisional.
Length = 1693
Score = 28.1 bits (63), Expect = 0.56
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 40 VGNILGEYGINIAHFHLGRSQSTEH 64
VG GE+G++ HFH +
Sbjct: 1321 VGGDPGEFGLDAEHFHALNAARARD 1345
>gnl|CDD|178390 PLN02793, PLN02793, Probable polygalacturonase.
Length = 443
Score = 26.4 bits (58), Expect = 1.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 50 NIAHFHLGRSQSTEHAISFLCIDGS 74
NI+ H+ + +TE AI F C D S
Sbjct: 358 NISFVHIKGTSATEEAIKFACSDSS 382
>gnl|CDD|183316 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase;
Provisional.
Length = 409
Score = 25.9 bits (58), Expect = 2.5
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 35 GIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCID--GSILNSVLEKL-SVNVTIRF 91
G++ + I E GINIA +L T+ I ++ ID L+ L ++ TIR
Sbjct: 350 GVLAAINQIFAEQGINIAAQYL----QTDGEIGYVVIDVDADYAEEALDALKAIPGTIRA 405
>gnl|CDD|162736 TIGR02162, torC, trimethylamine-N-oxide reductase c-type
cytochrome TorC. This family includes consists of
TorC, a pentahemic c-type cytochrome subunit of
periplasmic reductases for trimethylamine-N-oxide
(TMAO). The N-terminal half is closely related to
tetrahemic NapC (or NirT) subunits of periplasmic
nitrate (or nitrite) reductases; some species have both
TMAO and nitrate reductase complexes.
Length = 386
Score = 25.2 bits (55), Expect = 4.0
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 34 LGIVVFVGNILGEYGINIAHFHLGRSQSTEHAIS 67
LG++V +G I G G N H+ + ++ +TE IS
Sbjct: 16 LGVLVVIGFIAGAIGWNGFHYVVEKTSTTEFCIS 49
>gnl|CDD|148149 pfam06371, Drf_GBD, Diaphanous GTPase-binding Domain. This domain
is bound to by GTP-attached Rho proteins, leading to
activation of the Drf protein.
Length = 187
Score = 25.0 bits (55), Expect = 4.4
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 72 DGSILNSVLEKLSVNVT---IRFVKQF 95
DGSI LE L V + + +V +F
Sbjct: 77 DGSIDQKCLESLRVALRTNPVSWVTRF 103
>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase.
The magnesium ATPases have been classified as type IIIB
by a phylogenetic analysis.
Length = 867
Score = 24.4 bits (53), Expect = 6.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 6 KPRFIKIQEINFDVDIGRLMICIVNA 31
R+ K+ EI FD D RL + + N
Sbjct: 403 ASRWKKVDEIPFDFDRRRLSVVVENR 428
>gnl|CDD|129414 TIGR00314, cdhA, CO dehydrogenase/acetyl-CoA synthase complex,
epsilon subunit. Acetyl-CoA decarbonylase/synthase
(ACDS) is a multienzyme complex. Carbon monoxide
dehydrogenase is a synonym. The ACDS complex carries out
an unusual reaction involving the reversible cleavage
and synthesis of acetyl-CoA in methanogens. The model
contains the prosite signature for 4Fe-4S ferredoxins
[C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462
of the model.
Length = 784
Score = 24.0 bits (52), Expect = 9.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 18 DVDIGRLMICIVNADILGIVVFVG 41
DV+I ++ IV DI G++ VG
Sbjct: 483 DVEIRKVGAPIVFGDIPGVIAAVG 506
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.329 0.147 0.428
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,603,471
Number of extensions: 90059
Number of successful extensions: 231
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 29
Length of query: 100
Length of database: 5,994,473
Length adjustment: 67
Effective length of query: 33
Effective length of database: 4,546,737
Effective search space: 150042321
Effective search space used: 150042321
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.3 bits)