RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.33_1
         (100 letters)



>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
           biosynthesis, structural genomics, PSI, protein
           structure initiative; HET: TAR; 2.30A {Mycobacterium
           tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2
           PDB: 3dc2_A* 3ddn_A*
          Length = 529

 Score = 76.0 bits (186), Expect = 2e-15
 Identities = 18/95 (18%), Positives = 38/95 (40%)

Query: 4   DGKPRFIKIQEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTE 63
               + ++I   +FD+    + + I   D  G +  +G +LG  G+NI    L       
Sbjct: 435 QLSQKIVQINGRHFDLRAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGP 494

Query: 64  HAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEFN 98
            A   L +D  + + V   ++  V    ++  + +
Sbjct: 495 GATILLRLDQDVPDDVRTAIAAAVDAYKLEVVDLS 529


>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
           phosphoglycerate dehydrogenase PGDH, oxidoreductase;
           HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
           c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
           2pa3_A* 2p9g_A*
          Length = 404

 Score = 33.0 bits (74), Expect = 0.015
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 26  ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKL-S 84
           +  ++ +  G++  +  I  E G+NIA  +L  S    + +  +  D  +    L+ + +
Sbjct: 334 LMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKA 393

Query: 85  VNVTIR 90
           +  TIR
Sbjct: 394 IPGTIR 399


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.7 bits (69), Expect = 0.088
 Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 43/103 (41%)

Query: 2   FSDGKPRF------I--------------KIQEINFDVDIGRLMICIVNADILGIVVF-- 39
           FS+ K +F      +               I +     D+ +  +     D + I V+  
Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVPASDLINK-----DLVKNNVSFNAKD-IQIPVYDT 462

Query: 40  -VGNILGEYGINIAHFHLGR---------SQSTE----HAISF 68
             G+ L     +I+   +             +T+    H + F
Sbjct: 463 FDGSDLRVLSGSISE-RIVDCIIRLPVKWETTTQFKATHILDF 504


>3jxg_A Receptor-type tyrosine-protein phosphatase gamma; Ca-like domain,
           glycoprotein, hydrolase, membrane, phosphoprotein,
           transmembrane, cell adhesion; 1.70A {Mus musculus} PDB:
           3kld_B* 3jxh_C
          Length = 269

 Score = 27.2 bits (59), Expect = 0.98
 Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 3/35 (8%)

Query: 35  GIVVFVGNILGEYGINIAHFHLGRSQST---EHAI 66
              V    + G +      FH G S  +   EH++
Sbjct: 80  DYFVSGAGLPGRFKAEKVEFHWGHSNGSAGSEHSV 114


>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease
           asparagine switch; 1.30A {Staphylococcus aureus subsp}
           SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
          Length = 291

 Score = 26.9 bits (59), Expect = 1.0
 Identities = 5/31 (16%), Positives = 8/31 (25%)

Query: 35  GIVVFVGNILGEYGINIAHFHLGRSQSTEHA 65
           G VV  G      G  +       +    + 
Sbjct: 204 GTVVQAGWSNYGGGNQVTIKEANSNNYQWYM 234


>1zpv_A ACT domain protein; structural genomics, PSI, protein structure
          initiative, midwest center for structural genomics,
          MCSG; 1.90A {Streptococcus pneumoniae TIGR4} SCOP:
          d.58.18.7
          Length = 91

 Score = 25.9 bits (57), Expect = 2.1
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI------- 75
          + +I +V  D  GIV  V   + E G+NI              ++ +  D          
Sbjct: 5  KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRN 64

Query: 76 -LNSVLEKLSVNVTIR 90
             +  + L+V + I+
Sbjct: 65 EFEAFGQTLNVKINIQ 80


>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular
           transglucosylation, isomerase; HET: MLZ MLY; 1.90A
           {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1
          Length = 720

 Score = 25.6 bits (56), Expect = 2.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 40  VGNILGEYGINIAHFH 55
           VG+ L  Y I+   FH
Sbjct: 409 VGSDLRYYKISPDQFH 424


>2znc_A Carbonic anhydrase IV; lyase, zinc, murine, membrane; 2.80A {Mus
           musculus} SCOP: b.74.1.1 PDB: 3znc_A*
          Length = 258

 Score = 25.6 bits (55), Expect = 2.7
 Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 2/43 (4%)

Query: 35  GIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSI 75
           G  +  G++   Y     H H         EH+I        +
Sbjct: 75  GACIIGGDLPARYEAVQLHLHWSNGNDNGSEHSIDGRHFAMEM 117


>1eg1_A Endoglucanase I; mutation, cellulose degradation; HET: NAG; 3.60A
           {Hypocrea jecorina} SCOP: b.29.1.10
          Length = 371

 Score = 25.5 bits (56), Expect = 3.2
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)

Query: 3   SDGKPRFIKI--QEINFDVDIGRLMICIVNA 31
           SDG+   +K+  QE++FDVD+  L  C  N 
Sbjct: 114 SDGEYVMLKLNGQELSFDVDLSALP-CGENG 143


>3cf4_A Acetyl-COA decarbonylase/synthase alpha subunit; methanomicrobia,
           iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductase; 2.00A
           {Methanosarcina barkeri}
          Length = 807

 Score = 25.3 bits (55), Expect = 3.4
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 16  NFDVDIGRLMICIVNADILGIVVFVG 41
             D +I    + +V     GI+  +G
Sbjct: 497 VSDAEIRAEGLNLVMGTTPGIIAIIG 522


>2foy_A Carbonic anhydrase 1; lyase, zinc, inhibitor, copper; HET: B30;
           1.55A {Homo sapiens} SCOP: b.74.1.1 PDB: 1bzm_A* 1czm_A*
           1azm_A 1hug_A 1huh_A 1hcb_A* 2fw4_A* 2nmx_A* 2nn1_A*
           2nn7_A* 1jv0_A 1j9w_A 1crm_A 2cab_A 2it4_A
          Length = 260

 Score = 25.2 bits (54), Expect = 3.4
 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 2/41 (4%)

Query: 37  VVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSI 75
           V+  G     Y +   HFH G +     EH +  +     +
Sbjct: 78  VLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAEL 118


>2wp4_A Molybdopterin-converting factor subunit 2 1; transferase; 2.49A
          {Mycobacterium tuberculosis}
          Length = 147

 Score = 24.9 bits (54), Expect = 4.3
 Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 3  SDGKPRFIKIQEINFDVDIGRLMICIVNADILGIVVFVG 41
          ++G   + ++ +    VD   ++  +   +  GIV+FVG
Sbjct: 6  AEGAYPYCRLTDQPLSVD--EVLAAVSGPEQGGIVIFVG 42


>3k34_A Carbonic anhydrase 2; atomic resolution, sulfonamide inhibitor
           acetylation, cytoplasm, disease mutation, lyase,
           metal-BIND polymorphism, zinc; HET: HGB SUA; 0.90A {Homo
           sapiens} PDB: 1ca3_A* 1cnw_A* 1cny_A* 1eou_A* 1g6v_A
           1hca_A 1kwq_A* 1kwr_A* 1t9n_A 1tb0_X 1tbt_X 1te3_X
           1teq_X 1teu_X 1cnx_A 1xev_A 1xeg_A 2ax2_A* 2eu3_A*
           2ez7_A* ...
          Length = 260

 Score = 24.8 bits (53), Expect = 4.4
 Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 2/47 (4%)

Query: 22  GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAI 66
           G       +      V+  G + G Y +   HFH G       EH +
Sbjct: 63  GHAFNVEFDDSQDKAVLKGGPLDGTYRLIQFHFHWGSLDGQGSEHTV 109


>3mdz_A Carbonic anhydrase 7; structural genomics, structural consortium,
           SGC, cytoplasm, lyase, metal-binding, zinc; HET: EZL;
           2.32A {Homo sapiens}
          Length = 281

 Score = 24.7 bits (53), Expect = 4.5
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)

Query: 36  IVVFVGNILGEYGINIAHFHLGRSQST--EHAI 66
            VV  G + G Y +   HFH G+      EH +
Sbjct: 98  TVVTGGPLEGPYRLKQFHFHWGKKHDVGSEHTV 130


>3d0n_A Carbonic anhydrase 13; lyase, metal-binding, zinc, metal binding
           protein; HET: GOL; 1.55A {Homo sapiens} PDB: 3czv_A*
           3da2_A*
          Length = 264

 Score = 24.8 bits (53), Expect = 5.2
 Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%)

Query: 37  VVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSIL 76
           V+  G + G Y +   H H G +     EH +  +     + 
Sbjct: 81  VLRGGPLTGSYRLRQVHLHWGSADDHGSEHIVDGVSYAAELH 122


>2nyi_A Unknown protein; protein structure initiative, PSI, center for
           eukaryotic structural genomics, CESG, structural
           genomics; 1.80A {Galdieria sulphuraria}
          Length = 195

 Score = 24.3 bits (52), Expect = 5.9
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 13/83 (15%)

Query: 23  RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI------- 75
              + +   D  GIV  V  +L + G NI         +     +   +   +       
Sbjct: 93  EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLY 152

Query: 76  ------LNSVLEKLSVNVTIRFV 92
                 L+ V E+  V++ +  V
Sbjct: 153 QEVVTALSRVEEEFGVDIDLEEV 175


>1jqk_A CODH, carbon monoxide dehydrogenase; rossmann fold, oxidoreductase;
           2.80A {Rhodospirillum rubrum} SCOP: e.26.1.2
          Length = 639

 Score = 24.0 bits (52), Expect = 7.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 15  INFDVDIGRLMICIVNADILGIVVFVG 41
           +N D  +  L+  +VN +I GIV+FVG
Sbjct: 424 VNADDPLKPLVDNVVNGNIQGIVLFVG 450


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.329    0.147    0.428 

Gapped
Lambda     K      H
   0.267   0.0557    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 883,608
Number of extensions: 35675
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 28
Length of query: 100
Length of database: 5,693,230
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,093,126
Effective search space: 139166284
Effective search space used: 139166284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.4 bits)