RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= 537021.9.peg.33_1 (100 letters) >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosynthesis, structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529 Score = 76.0 bits (186), Expect = 2e-15 Identities = 18/95 (18%), Positives = 38/95 (40%) Query: 4 DGKPRFIKIQEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTE 63 + ++I +FD+ + + I D G + +G +LG G+NI L Sbjct: 435 QLSQKIVQINGRHFDLRAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGP 494 Query: 64 HAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEFN 98 A L +D + + V ++ V ++ + + Sbjct: 495 GATILLRLDQDVPDDVRTAIAAAVDAYKLEVVDLS 529 >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404 Score = 33.0 bits (74), Expect = 0.015 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKL-S 84 + ++ + G++ + I E G+NIA +L S + + + D + L+ + + Sbjct: 334 LMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKA 393 Query: 85 VNVTIR 90 + TIR Sbjct: 394 IPGTIR 399 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 30.7 bits (69), Expect = 0.088 Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 43/103 (41%) Query: 2 FSDGKPRF------I--------------KIQEINFDVDIGRLMICIVNADILGIVVF-- 39 FS+ K +F + I + D+ + + D + I V+ Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVPASDLINK-----DLVKNNVSFNAKD-IQIPVYDT 462 Query: 40 -VGNILGEYGINIAHFHLGR---------SQSTE----HAISF 68 G+ L +I+ + +T+ H + F Sbjct: 463 FDGSDLRVLSGSISE-RIVDCIIRLPVKWETTTQFKATHILDF 504 >3jxg_A Receptor-type tyrosine-protein phosphatase gamma; Ca-like domain, glycoprotein, hydrolase, membrane, phosphoprotein, transmembrane, cell adhesion; 1.70A {Mus musculus} PDB: 3kld_B* 3jxh_C Length = 269 Score = 27.2 bits (59), Expect = 0.98 Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 3/35 (8%) Query: 35 GIVVFVGNILGEYGINIAHFHLGRSQST---EHAI 66 V + G + FH G S + EH++ Sbjct: 80 DYFVSGAGLPGRFKAEKVEFHWGHSNGSAGSEHSV 114 >1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A Length = 291 Score = 26.9 bits (59), Expect = 1.0 Identities = 5/31 (16%), Positives = 8/31 (25%) Query: 35 GIVVFVGNILGEYGINIAHFHLGRSQSTEHA 65 G VV G G + + + Sbjct: 204 GTVVQAGWSNYGGGNQVTIKEANSNNYQWYM 234 >1zpv_A ACT domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Streptococcus pneumoniae TIGR4} SCOP: d.58.18.7 Length = 91 Score = 25.9 bits (57), Expect = 2.1 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 8/76 (10%) Query: 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI------- 75 + +I +V D GIV V + E G+NI ++ + D Sbjct: 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRN 64 Query: 76 -LNSVLEKLSVNVTIR 90 + + L+V + I+ Sbjct: 65 EFEAFGQTLNVKINIQ 80 >1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1 Length = 720 Score = 25.6 bits (56), Expect = 2.6 Identities = 7/16 (43%), Positives = 9/16 (56%) Query: 40 VGNILGEYGINIAHFH 55 VG+ L Y I+ FH Sbjct: 409 VGSDLRYYKISPDQFH 424 >2znc_A Carbonic anhydrase IV; lyase, zinc, murine, membrane; 2.80A {Mus musculus} SCOP: b.74.1.1 PDB: 3znc_A* Length = 258 Score = 25.6 bits (55), Expect = 2.7 Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 2/43 (4%) Query: 35 GIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSI 75 G + G++ Y H H EH+I + Sbjct: 75 GACIIGGDLPARYEAVQLHLHWSNGNDNGSEHSIDGRHFAMEM 117 >1eg1_A Endoglucanase I; mutation, cellulose degradation; HET: NAG; 3.60A {Hypocrea jecorina} SCOP: b.29.1.10 Length = 371 Score = 25.5 bits (56), Expect = 3.2 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%) Query: 3 SDGKPRFIKI--QEINFDVDIGRLMICIVNA 31 SDG+ +K+ QE++FDVD+ L C N Sbjct: 114 SDGEYVMLKLNGQELSFDVDLSALP-CGENG 143 >3cf4_A Acetyl-COA decarbonylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductase; 2.00A {Methanosarcina barkeri} Length = 807 Score = 25.3 bits (55), Expect = 3.4 Identities = 6/26 (23%), Positives = 11/26 (42%) Query: 16 NFDVDIGRLMICIVNADILGIVVFVG 41 D +I + +V GI+ +G Sbjct: 497 VSDAEIRAEGLNLVMGTTPGIIAIIG 522 >2foy_A Carbonic anhydrase 1; lyase, zinc, inhibitor, copper; HET: B30; 1.55A {Homo sapiens} SCOP: b.74.1.1 PDB: 1bzm_A* 1czm_A* 1azm_A 1hug_A 1huh_A 1hcb_A* 2fw4_A* 2nmx_A* 2nn1_A* 2nn7_A* 1jv0_A 1j9w_A 1crm_A 2cab_A 2it4_A Length = 260 Score = 25.2 bits (54), Expect = 3.4 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 2/41 (4%) Query: 37 VVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSI 75 V+ G Y + HFH G + EH + + + Sbjct: 78 VLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAEL 118 >2wp4_A Molybdopterin-converting factor subunit 2 1; transferase; 2.49A {Mycobacterium tuberculosis} Length = 147 Score = 24.9 bits (54), Expect = 4.3 Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Query: 3 SDGKPRFIKIQEINFDVDIGRLMICIVNADILGIVVFVG 41 ++G + ++ + VD ++ + + GIV+FVG Sbjct: 6 AEGAYPYCRLTDQPLSVD--EVLAAVSGPEQGGIVIFVG 42 >3k34_A Carbonic anhydrase 2; atomic resolution, sulfonamide inhibitor acetylation, cytoplasm, disease mutation, lyase, metal-BIND polymorphism, zinc; HET: HGB SUA; 0.90A {Homo sapiens} PDB: 1ca3_A* 1cnw_A* 1cny_A* 1eou_A* 1g6v_A 1hca_A 1kwq_A* 1kwr_A* 1t9n_A 1tb0_X 1tbt_X 1te3_X 1teq_X 1teu_X 1cnx_A 1xev_A 1xeg_A 2ax2_A* 2eu3_A* 2ez7_A* ... Length = 260 Score = 24.8 bits (53), Expect = 4.4 Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 2/47 (4%) Query: 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAI 66 G + V+ G + G Y + HFH G EH + Sbjct: 63 GHAFNVEFDDSQDKAVLKGGPLDGTYRLIQFHFHWGSLDGQGSEHTV 109 >3mdz_A Carbonic anhydrase 7; structural genomics, structural consortium, SGC, cytoplasm, lyase, metal-binding, zinc; HET: EZL; 2.32A {Homo sapiens} Length = 281 Score = 24.7 bits (53), Expect = 4.5 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%) Query: 36 IVVFVGNILGEYGINIAHFHLGRSQST--EHAI 66 VV G + G Y + HFH G+ EH + Sbjct: 98 TVVTGGPLEGPYRLKQFHFHWGKKHDVGSEHTV 130 >3d0n_A Carbonic anhydrase 13; lyase, metal-binding, zinc, metal binding protein; HET: GOL; 1.55A {Homo sapiens} PDB: 3czv_A* 3da2_A* Length = 264 Score = 24.8 bits (53), Expect = 5.2 Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%) Query: 37 VVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSIL 76 V+ G + G Y + H H G + EH + + + Sbjct: 81 VLRGGPLTGSYRLRQVHLHWGSADDHGSEHIVDGVSYAAELH 122 >2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Length = 195 Score = 24.3 bits (52), Expect = 5.9 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 13/83 (15%) Query: 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI------- 75 + + D GIV V +L + G NI + + + + Sbjct: 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLY 152 Query: 76 ------LNSVLEKLSVNVTIRFV 92 L+ V E+ V++ + V Sbjct: 153 QEVVTALSRVEEEFGVDIDLEEV 175 >1jqk_A CODH, carbon monoxide dehydrogenase; rossmann fold, oxidoreductase; 2.80A {Rhodospirillum rubrum} SCOP: e.26.1.2 Length = 639 Score = 24.0 bits (52), Expect = 7.4 Identities = 12/27 (44%), Positives = 18/27 (66%) Query: 15 INFDVDIGRLMICIVNADILGIVVFVG 41 +N D + L+ +VN +I GIV+FVG Sbjct: 424 VNADDPLKPLVDNVVNGNIQGIVLFVG 450 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.329 0.147 0.428 Gapped Lambda K H 0.267 0.0557 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 883,608 Number of extensions: 35675 Number of successful extensions: 138 Number of sequences better than 10.0: 1 Number of HSP's gapped: 138 Number of HSP's successfully gapped: 28 Length of query: 100 Length of database: 5,693,230 Length adjustment: 66 Effective length of query: 34 Effective length of database: 4,093,126 Effective search space: 139166284 Effective search space used: 139166284 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 50 (23.4 bits)