Query 537021.9.peg.330_1 Match_columns 43 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Tue May 24 19:19:38 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_330.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3cz6_A DNA-binding protein RA 29.3 34 0.00099 17.5 2.1 21 17-37 31-51 (112) 2 >3feu_A Putative lipoprotein; 17.1 50 0.0015 16.7 0.9 33 6-38 6-44 (97) 3 >1acv_A DSBA; disulfide oxidor 10.3 87 0.0026 15.6 0.6 32 6-37 4-39 (105) 4 >2kji_A Probable insulin-like 9.4 1.4E+02 0.0041 14.6 1.3 13 24-36 35-47 (50) 5 >2pb2_A Acetylornithine/succin 9.1 1.5E+02 0.0043 14.5 1.4 33 3-35 43-75 (171) 6 >1r7a_A Sucrose phosphorylase; 5.9 2.8E+02 0.0084 13.1 2.2 19 25-43 11-29 (98) 7 >1zbs_A Hypothetical protein P 5.5 2.1E+02 0.0061 13.8 0.6 21 22-42 64-86 (129) 8 >2byv_E RAP guanine nucleotide 5.4 3E+02 0.009 13.0 1.8 15 2-16 2-16 (91) 9 >2ou1_A Apolipoprotein A-II; h 4.5 69 0.002 16.1 -2.3 10 4-13 53-62 (77) 10 >2au5_A Conserved domain prote 4.5 2.8E+02 0.0084 13.1 0.8 10 25-34 122-131 (139) No 1 >>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} (A:1-112) Probab=29.34 E-value=34 Score=17.51 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=17.5 Q ss_pred CCCCHHHHHCCCCHHHHHHHH Q ss_conf 765403321375568999987 Q 537021.9.peg.3 17 DKSIPSFFSFGCSDEFILKSL 37 (43) Q Consensus 17 dksipsffsfgcsdefilksl 37 (43) |--.|.||.||...||+.|-- T Consensus 31 dlFlp~FF~f~sTreFl~Ki~ 51 (112) T 3cz6_A 31 DLFLPLFFHFGSTRQFXDKLH 51 (112) T ss_dssp TTBCGGGGGCSSHHHHHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHHH T ss_conf 888888750475688899999 No 2 >>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio fischeri ES114} (A:1-63,A:152-185) Probab=17.09 E-value=50 Score=16.72 Aligned_cols=33 Identities=15% Similarity=0.382 Sum_probs=19.9 Q ss_pred CCCCCEEEEC------CCCCCHHHHHCCCCHHHHHHHHH Q ss_conf 0387057522------77654033213755689999877 Q 537021.9.peg.3 6 KAGTDVLDIE------GDKSIPSFFSFGCSDEFILKSLI 38 (43) Q Consensus 6 kagtdvldie------gdksipsffsfgcsdefilksli 38 (43) ++|.|-.-++ +...+--||||||..-+-....+ T Consensus 6 ~eG~~Y~vl~~p~~~~~~~eVvEFFsy~CpHCy~fEp~l 44 (97) T 3feu_A 6 KEGVQYEVLSTSLENDGXAPVTEVFALSCGHCRNXENFL 44 (97) T ss_dssp CBTTTEEECSSCCTTSCCCSEEEEECTTCHHHHHHGGGH T ss_pred CCCCCCEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHH T ss_conf 699750788788888997389999768997633215567 No 3 >>1acv_A DSBA; disulfide oxidoreductase, thioredoxin fold, redox-active center; 1.90A {Escherichia coli} (A:1-64,A:149-189) Probab=10.32 E-value=87 Score=15.56 Aligned_cols=32 Identities=22% Similarity=0.496 Sum_probs=19.7 Q ss_pred CCCCCEEEECC----CCCCHHHHHCCCCHHHHHHHH Q ss_conf 03870575227----765403321375568999987 Q 537021.9.peg.3 6 KAGTDVLDIEG----DKSIPSFFSFGCSDEFILKSL 37 (43) Q Consensus 6 kagtdvldieg----dksipsffsfgcsdefilksl 37 (43) ++|+|-..|+. .-.+--||||+|..-+-+... T Consensus 4 ~EG~~Y~vL~~p~~~kpeVvEFFSy~CpHCy~fe~~ 39 (105) T 1acv_A 4 EDGKQYTTLEKPVAGAPQVLEFFSFFCPSCYQFEEV 39 (105) T ss_dssp CBTTTEEECSSCCTTCCSEEEEECTTCHHHHHHHHT T ss_pred CCCCCCEECCCCCCCCCEEEEEECCCCCCHHHHHHH T ss_conf 789876788888999977999988889340778788 No 4 >>2kji_A Probable insulin-like peptide beta-type 5; hormone, C. elegans, folding, cleavage on PAIR of basic residues, disulfide bond, secreted; NMR {Caenorhabditis elegans} (A:) Probab=9.37 E-value=1.4e+02 Score=14.61 Aligned_cols=13 Identities=31% Similarity=0.634 Sum_probs=9.7 Q ss_pred HHCCCCHHHHHHH Q ss_conf 2137556899998 Q 537021.9.peg.3 24 FSFGCSDEFILKS 36 (43) Q Consensus 24 fsfgcsdefilks 36 (43) -+--|+||||-++ T Consensus 35 C~~~Ct~e~I~~~ 47 (50) T 2kji_A 35 CGNQCSDDYIRSA 47 (50) T ss_dssp TTTCCCHHHHHHH T ss_pred HHCCCCHHHHHHH T ss_conf 4130889999883 No 5 >>2pb2_A Acetylornithine/succinyldiaminopimelate aminotransferase; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis; HET: PLP; 1.91A {Salmonella typhimurium LT2} PDB: 2pb0_A* (A:1-69,A:319-420) Probab=9.14 E-value=1.5e+02 Score=14.50 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=26.1 Q ss_pred EEECCCCCEEEECCCCCCHHHHHCCCCHHHHHH Q ss_conf 341038705752277654033213755689999 Q 537021.9.peg.3 3 RVQKAGTDVLDIEGDKSIPSFFSFGCSDEFILK 35 (43) Q Consensus 3 rvqkagtdvldiegdksipsffsfgcsdefilk 35 (43) -+.-.|.-+.|.+|.+-|--+-+.||+||=++. T Consensus 43 i~~geG~~l~D~dG~~ylD~~sgigh~ee~l~~ 75 (171) T 2pb2_A 43 PVKGKGSRVWDQQGKEYIDFAGGIAVTTPEVLQ 75 (171) T ss_dssp EEEEEBTEEEETTCCEEEESSHHHHTCSHHHHH T ss_pred EEEEECCEEEECCCCEEEECCCCHHHHCCCCCC T ss_conf 998475999979879999954088867222220 No 6 >>1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside hydrolase, transferase; 1.77A {Bifidobacterium adolescentis} (A:343-371,A:436-504) Probab=5.92 E-value=2.8e+02 Score=13.14 Aligned_cols=19 Identities=26% Similarity=0.605 Sum_probs=15.9 Q ss_pred HCCCCHHHHHHHHHHHHHC Q ss_conf 1375568999987776209 Q 537021.9.peg.3 25 SFGCSDEFILKSLIIQIFL 43 (43) Q Consensus 25 sfgcsdefilksliiqifl 43 (43) ..||.|.-.|-+-.||+|+ T Consensus 11 ALG~dD~~YLlARaiQfFm 29 (98) T 1r7a_A 11 ALGXNDQHYIAARAVQFFL 29 (98) T ss_dssp HTTTCHHHHHHHHHHHHHS T ss_pred HCCCHHHHHHHHHHHHHCC T ss_conf 0034799999999998558 No 7 >>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.30A {Porphyromonas gingivalis W83} (A:1-107,A:270-291) Probab=5.46 E-value=2.1e+02 Score=13.78 Aligned_cols=21 Identities=19% Similarity=0.459 Sum_probs=13.2 Q ss_pred HHHHCCCCHHH--HHHHHHHHHH Q ss_conf 33213755689--9998777620 Q 537021.9.peg.3 22 SFFSFGCSDEF--ILKSLIIQIF 42 (43) Q Consensus 22 sffsfgcsdef--ilksliiqif 42 (43) -||.-||++|- +++..+.+.| T Consensus 64 yFYGAGCt~ek~~~v~~~l~~~F 86 (129) T 1zbs_A 64 YFYGAGCTPAKAPXLNEALDSXL 86 (129) T ss_dssp EEEETTCCTTTHHHHHHHHHHHS T ss_pred EEEECCCCCCCCHHHHHHHHHHC T ss_conf 88740466310157899999753 No 8 >>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} (E:452-492,E:912-961) Probab=5.45 E-value=3e+02 Score=12.99 Aligned_cols=15 Identities=40% Similarity=0.587 Sum_probs=13.1 Q ss_pred EEEECCCCCEEEECC Q ss_conf 134103870575227 Q 537021.9.peg.3 2 VRVQKAGTDVLDIEG 16 (43) Q Consensus 2 vrvqkagtdvldieg 16 (43) ||.|..|.|||-.|- T Consensus 2 ~~~~~~~~~~~~~~~ 16 (91) T 2byv_E 2 VRLKEHDQDVLVLEK 16 (91) T ss_dssp EEEESSSSEEEEEEE T ss_pred HHHHHCCCCCEEEEE T ss_conf 876542764216888 No 9 >>2ou1_A Apolipoprotein A-II; high density lipoproteins, helix, cholesterol metabolism X-RAY diffraction, lipid binding protein; 2.00A {Homo sapiens} PDB: 1l6l_A (A:) Probab=4.52 E-value=69 Score=16.05 Aligned_cols=10 Identities=40% Similarity=0.926 Sum_probs=6.7 Q ss_pred EECCCCCEEE Q ss_conf 4103870575 Q 537021.9.peg.3 4 VQKAGTDVLD 13 (43) Q Consensus 4 vqkagtdvld 13 (43) |+|||||.++ T Consensus 53 vkkagtdl~n 62 (77) T 2ou1_A 53 IKKAGTELVN 62 (77) T ss_dssp HHTHHHHTTC T ss_pred HHHHHHHHHH T ss_conf 9997268999 No 10 >>2au5_A Conserved domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Enterococcus faecalis V583} (A:) Probab=4.48 E-value=2.8e+02 Score=13.13 Aligned_cols=10 Identities=60% Similarity=0.949 Sum_probs=6.6 Q ss_pred HCCCCHHHHH Q ss_conf 1375568999 Q 537021.9.peg.3 25 SFGCSDEFIL 34 (43) Q Consensus 25 sfgcsdefil 34 (43) -.-|+||||- T Consensus 122 LLL~~DE~It 131 (139) T 2au5_A 122 LLLCSDEFIX 131 (139) T ss_dssp HHHTCHHHHH T ss_pred HHHCCHHHHH T ss_conf 9980469988 Done!