Query         537021.9.peg.330_1
Match_columns 43
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Tue May 24 19:19:38 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_330.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3cz6_A DNA-binding protein RA  29.3      34 0.00099   17.5   2.1   21   17-37     31-51  (112)
  2 >3feu_A Putative lipoprotein;   17.1      50  0.0015   16.7   0.9   33    6-38      6-44  (97)
  3 >1acv_A DSBA; disulfide oxidor  10.3      87  0.0026   15.6   0.6   32    6-37      4-39  (105)
  4 >2kji_A Probable insulin-like    9.4 1.4E+02  0.0041   14.6   1.3   13   24-36     35-47  (50)
  5 >2pb2_A Acetylornithine/succin   9.1 1.5E+02  0.0043   14.5   1.4   33    3-35     43-75  (171)
  6 >1r7a_A Sucrose phosphorylase;   5.9 2.8E+02  0.0084   13.1   2.2   19   25-43     11-29  (98)
  7 >1zbs_A Hypothetical protein P   5.5 2.1E+02  0.0061   13.8   0.6   21   22-42     64-86  (129)
  8 >2byv_E RAP guanine nucleotide   5.4   3E+02   0.009   13.0   1.8   15    2-16      2-16  (91)
  9 >2ou1_A Apolipoprotein A-II; h   4.5      69   0.002   16.1  -2.3   10    4-13     53-62  (77)
 10 >2au5_A Conserved domain prote   4.5 2.8E+02  0.0084   13.1   0.8   10   25-34    122-131 (139)

No 1  
>>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} (A:1-112)
Probab=29.34  E-value=34  Score=17.51  Aligned_cols=21  Identities=38%  Similarity=0.646  Sum_probs=17.5

Q ss_pred             CCCCHHHHHCCCCHHHHHHHH
Q ss_conf             765403321375568999987
Q 537021.9.peg.3   17 DKSIPSFFSFGCSDEFILKSL   37 (43)
Q Consensus        17 dksipsffsfgcsdefilksl   37 (43)
                      |--.|.||.||...||+.|--
T Consensus        31 dlFlp~FF~f~sTreFl~Ki~   51 (112)
T 3cz6_A           31 DLFLPLFFHFGSTRQFXDKLH   51 (112)
T ss_dssp             TTBCGGGGGCSSHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHH
T ss_conf             888888750475688899999


No 2  
>>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio fischeri ES114} (A:1-63,A:152-185)
Probab=17.09  E-value=50  Score=16.72  Aligned_cols=33  Identities=15%  Similarity=0.382  Sum_probs=19.9

Q ss_pred             CCCCCEEEEC------CCCCCHHHHHCCCCHHHHHHHHH
Q ss_conf             0387057522------77654033213755689999877
Q 537021.9.peg.3    6 KAGTDVLDIE------GDKSIPSFFSFGCSDEFILKSLI   38 (43)
Q Consensus         6 kagtdvldie------gdksipsffsfgcsdefilksli   38 (43)
                      ++|.|-.-++      +...+--||||||..-+-....+
T Consensus         6 ~eG~~Y~vl~~p~~~~~~~eVvEFFsy~CpHCy~fEp~l   44 (97)
T 3feu_A            6 KEGVQYEVLSTSLENDGXAPVTEVFALSCGHCRNXENFL   44 (97)
T ss_dssp             CBTTTEEECSSCCTTSCCCSEEEEECTTCHHHHHHGGGH
T ss_pred             CCCCCCEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHH
T ss_conf             699750788788888997389999768997633215567


No 3  
>>1acv_A DSBA; disulfide oxidoreductase, thioredoxin fold, redox-active center; 1.90A {Escherichia coli} (A:1-64,A:149-189)
Probab=10.32  E-value=87  Score=15.56  Aligned_cols=32  Identities=22%  Similarity=0.496  Sum_probs=19.7

Q ss_pred             CCCCCEEEECC----CCCCHHHHHCCCCHHHHHHHH
Q ss_conf             03870575227----765403321375568999987
Q 537021.9.peg.3    6 KAGTDVLDIEG----DKSIPSFFSFGCSDEFILKSL   37 (43)
Q Consensus         6 kagtdvldieg----dksipsffsfgcsdefilksl   37 (43)
                      ++|+|-..|+.    .-.+--||||+|..-+-+...
T Consensus         4 ~EG~~Y~vL~~p~~~kpeVvEFFSy~CpHCy~fe~~   39 (105)
T 1acv_A            4 EDGKQYTTLEKPVAGAPQVLEFFSFFCPSCYQFEEV   39 (105)
T ss_dssp             CBTTTEEECSSCCTTCCSEEEEECTTCHHHHHHHHT
T ss_pred             CCCCCCEECCCCCCCCCEEEEEECCCCCCHHHHHHH
T ss_conf             789876788888999977999988889340778788


No 4  
>>2kji_A Probable insulin-like peptide beta-type 5; hormone, C. elegans, folding, cleavage on PAIR of basic residues, disulfide bond, secreted; NMR {Caenorhabditis elegans} (A:)
Probab=9.37  E-value=1.4e+02  Score=14.61  Aligned_cols=13  Identities=31%  Similarity=0.634  Sum_probs=9.7

Q ss_pred             HHCCCCHHHHHHH
Q ss_conf             2137556899998
Q 537021.9.peg.3   24 FSFGCSDEFILKS   36 (43)
Q Consensus        24 fsfgcsdefilks   36 (43)
                      -+--|+||||-++
T Consensus        35 C~~~Ct~e~I~~~   47 (50)
T 2kji_A           35 CGNQCSDDYIRSA   47 (50)
T ss_dssp             TTTCCCHHHHHHH
T ss_pred             HHCCCCHHHHHHH
T ss_conf             4130889999883


No 5  
>>2pb2_A Acetylornithine/succinyldiaminopimelate aminotransferase; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis; HET: PLP; 1.91A {Salmonella typhimurium LT2} PDB: 2pb0_A* (A:1-69,A:319-420)
Probab=9.14  E-value=1.5e+02  Score=14.50  Aligned_cols=33  Identities=21%  Similarity=0.249  Sum_probs=26.1

Q ss_pred             EEECCCCCEEEECCCCCCHHHHHCCCCHHHHHH
Q ss_conf             341038705752277654033213755689999
Q 537021.9.peg.3    3 RVQKAGTDVLDIEGDKSIPSFFSFGCSDEFILK   35 (43)
Q Consensus         3 rvqkagtdvldiegdksipsffsfgcsdefilk   35 (43)
                      -+.-.|.-+.|.+|.+-|--+-+.||+||=++.
T Consensus        43 i~~geG~~l~D~dG~~ylD~~sgigh~ee~l~~   75 (171)
T 2pb2_A           43 PVKGKGSRVWDQQGKEYIDFAGGIAVTTPEVLQ   75 (171)
T ss_dssp             EEEEEBTEEEETTCCEEEESSHHHHTCSHHHHH
T ss_pred             EEEEECCEEEECCCCEEEECCCCHHHHCCCCCC
T ss_conf             998475999979879999954088867222220


No 6  
>>1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside hydrolase, transferase; 1.77A {Bifidobacterium adolescentis} (A:343-371,A:436-504)
Probab=5.92  E-value=2.8e+02  Score=13.14  Aligned_cols=19  Identities=26%  Similarity=0.605  Sum_probs=15.9

Q ss_pred             HCCCCHHHHHHHHHHHHHC
Q ss_conf             1375568999987776209
Q 537021.9.peg.3   25 SFGCSDEFILKSLIIQIFL   43 (43)
Q Consensus        25 sfgcsdefilksliiqifl   43 (43)
                      ..||.|.-.|-+-.||+|+
T Consensus        11 ALG~dD~~YLlARaiQfFm   29 (98)
T 1r7a_A           11 ALGXNDQHYIAARAVQFFL   29 (98)
T ss_dssp             HTTTCHHHHHHHHHHHHHS
T ss_pred             HCCCHHHHHHHHHHHHHCC
T ss_conf             0034799999999998558


No 7  
>>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.30A {Porphyromonas gingivalis W83} (A:1-107,A:270-291)
Probab=5.46  E-value=2.1e+02  Score=13.78  Aligned_cols=21  Identities=19%  Similarity=0.459  Sum_probs=13.2

Q ss_pred             HHHHCCCCHHH--HHHHHHHHHH
Q ss_conf             33213755689--9998777620
Q 537021.9.peg.3   22 SFFSFGCSDEF--ILKSLIIQIF   42 (43)
Q Consensus        22 sffsfgcsdef--ilksliiqif   42 (43)
                      -||.-||++|-  +++..+.+.|
T Consensus        64 yFYGAGCt~ek~~~v~~~l~~~F   86 (129)
T 1zbs_A           64 YFYGAGCTPAKAPXLNEALDSXL   86 (129)
T ss_dssp             EEEETTCCTTTHHHHHHHHHHHS
T ss_pred             EEEECCCCCCCCHHHHHHHHHHC
T ss_conf             88740466310157899999753


No 8  
>>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} (E:452-492,E:912-961)
Probab=5.45  E-value=3e+02  Score=12.99  Aligned_cols=15  Identities=40%  Similarity=0.587  Sum_probs=13.1

Q ss_pred             EEEECCCCCEEEECC
Q ss_conf             134103870575227
Q 537021.9.peg.3    2 VRVQKAGTDVLDIEG   16 (43)
Q Consensus         2 vrvqkagtdvldieg   16 (43)
                      ||.|..|.|||-.|-
T Consensus         2 ~~~~~~~~~~~~~~~   16 (91)
T 2byv_E            2 VRLKEHDQDVLVLEK   16 (91)
T ss_dssp             EEEESSSSEEEEEEE
T ss_pred             HHHHHCCCCCEEEEE
T ss_conf             876542764216888


No 9  
>>2ou1_A Apolipoprotein A-II; high density lipoproteins, helix, cholesterol metabolism X-RAY diffraction, lipid binding protein; 2.00A {Homo sapiens} PDB: 1l6l_A (A:)
Probab=4.52  E-value=69  Score=16.05  Aligned_cols=10  Identities=40%  Similarity=0.926  Sum_probs=6.7

Q ss_pred             EECCCCCEEE
Q ss_conf             4103870575
Q 537021.9.peg.3    4 VQKAGTDVLD   13 (43)
Q Consensus         4 vqkagtdvld   13 (43)
                      |+|||||.++
T Consensus        53 vkkagtdl~n   62 (77)
T 2ou1_A           53 IKKAGTELVN   62 (77)
T ss_dssp             HHTHHHHTTC
T ss_pred             HHHHHHHHHH
T ss_conf             9997268999


No 10 
>>2au5_A Conserved domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Enterococcus faecalis V583} (A:)
Probab=4.48  E-value=2.8e+02  Score=13.13  Aligned_cols=10  Identities=60%  Similarity=0.949  Sum_probs=6.6

Q ss_pred             HCCCCHHHHH
Q ss_conf             1375568999
Q 537021.9.peg.3   25 SFGCSDEFIL   34 (43)
Q Consensus        25 sfgcsdefil   34 (43)
                      -.-|+||||-
T Consensus       122 LLL~~DE~It  131 (139)
T 2au5_A          122 LLLCSDEFIX  131 (139)
T ss_dssp             HHHTCHHHHH
T ss_pred             HHHCCHHHHH
T ss_conf             9980469988


Done!